cluster # 3874

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Anopheles gambiae
cluster # 3874 cluster # 3874 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3874#0 length = 683 sequences # 1

consensus_3874#1 length = 613 sequences # 1
consensus_3874#2 length = 346 sequences # 1

consensusID : consensus_3874#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCGGTACGCAGCCAGAGTAGAGCGTCGTCGTGTGTGTCGATCTCGAGATCCGCTCCGGGGCTCGACTTTTTTTTTGCCTTTGGACGGCGAAAGAAGGGATTTTTGTTTCGCTTCTTCAGTTTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCGCGTTGCGTTCAATGAAAATTGTGTTTGAAAGATCCCGACCAGCACGACGAGCCGTCGTGTGCTGTGCAGTTGCTGGTGATTTAGTAGTGAATGTGTGTGTGTGCAAATGGTGATTAAAGAAGAAGAAGAAAAAAGAATGTTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGTAGTCGGTGCAGAAATTGAAGTAAAAAAAAAATTAAAACAAGCAGTAACGAAAACAACAAAAATCAGCCGAAAGGGCGCTGCGAAAACTTGTTCCTGCTAAACCGTTGCGCCGCCAATCCAAGCAGCCACAGTCCAGCTCCAGCAGTAGCAGCCAGGGCAGCAGCATCCAGCGCAACACTGCTCACGCTGCTCACCAGAGTGCTCCCACGTTCCCCAACGGTTCCCCCGCTGAAAGGCGCGCCAGTGTGAAAGATTCTAACGAAGCAAGCCGTGCGCTCGCTCTCTCGCTCCAACATTCACACACATACAAAAAGGTCCACACACC]

[+] EMBL BM582691             [CCGGTACGCAGCCAGAGTAGAGCGTCGTCGTGTGTGTCGATCTCGAGATCCGCTCCGGGGCTCGACTTTTTTTTTGCCTTTGGACGGCGAAAGAAGGGATTTTTGTTTCGCTTCTTCAGTTTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCGCGTTGCGTTCAATGAAAATTGTGTTTGAAAGATCCCGACCAGCACGACGAGCCGTCGTGTGCTGTGCAGTTGCTGGTGATTTAGTAGTGAATGTGTGTGTGTGCAAATGGTGATTAAAGAAGAAGAAGAAAAAAGAATGTTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGTAGTCGGTGCAGAAATTGAAGTAAAAAAAAAATTAAAACAAGCAGTAACGAAAACAACAAAAATCAGCCGAAAGGGCGCTGCGAAAACTTGTTCCTGCTAAACCGTTGCGCCGCCAATCCAAGCAGCCACAGTCCAGCTCCAGCAGTAGCAGCCAGGGCAGCAGCATCCAGCGCAACACTGCTCACGCTGCTCACCAGAGTGCTCCCACGTTCCCCAACGGTTCCCCCGCTGAAAGGCGCGCCAGTGTGAAAGATTCTAACGAAGCAAGCCGTGCGCTCGCTCTCTCGCTCCAACATTCACACACATACAAAAAGGTCCACACACC]




>consensus_3874#0
CCGGTACGCAGCCAGAGTAGAGCGTCGTCGTGTGTGTCGATCTCGAGATCCGCTCCGGGG
CTCGACTTTTTTTTTGCCTTTGGACGGCGAAAGAAGGGATTTTTGTTTCGCTTCTTCAGT
TTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCGCGTTGCGT
TCAATGAAAATTGTGTTTGAAAGATCCCGACCAGCACGACGAGCCGTCGTGTGCTGTGCA
GTTGCTGGTGATTTAGTAGTGAATGTGTGTGTGTGCAAATGGTGATTAAAGAAGAAGAAG
AAAAAAGAATGTTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGTAG
TCGGTGCAGAAATTGAAGTAAAAAAAAAATTAAAACAAGCAGTAACGAAAACAACAAAAA
TCAGCCGAAAGGGCGCTGCGAAAACTTGTTCCTGCTAAACCGTTGCGCCGCCAATCCAAG
CAGCCACAGTCCAGCTCCAGCAGTAGCAGCCAGGGCAGCAGCATCCAGCGCAACACTGCT
CACGCTGCTCACCAGAGTGCTCCCACGTTCCCCAACGGTTCCCCCGCTGAAAGGCGCGCC
AGTGTGAAAGATTCTAACGAAGCAAGCCGTGCGCTCGCTCTCTCGCTCCAACATTCACAC
ACATACAAAAAGGTCCACACACC

consensusID : consensus_3874#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGGATTTTTGTTTCGCTTCTTCAGTTTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCGCGTTGCGTTCAATGAAAATTGTGTTTGAAAGGTGATTAGCTTTCGAGTGTGTGTTTTTTATATAAGTGTGGTGTGCCATTCTGGGCTAATCGCGGTGCTTGGAGGATTAATATTTCGTGATATTGTGTATTACACTCGTACGAACAGCTCCCGTGTGGTTTTGAGCCGAAAAGTGAAACAATTTCGTTTGTTTGCGTTTGCGTTGCAAGCAAAACATTTTAAACAATTATAGCAAACAATTAAAAAAAACAAAACAAAACACATATTAAAGCATAGTAGGAAGATCCAACGTGTCTTGCCAAGTGCTTCCATAGTAAAGAAAATTATTCTCTCTCTCCCCATTTGGAATAGCAGATCCCGACCAGCACGACGAGCCGTCGTGTGCTGTGCAGTTGCTGGTGATTTAGTAGTGAATGTGTGTGTGTGCAAATGGTGATTAAAGAAGAAGAAGAAAAAAGAATGTTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGT]

[+] EMBL BM625381             [CCGCCCACGCGTCCGCCCACGCGTCCGGGGATTTTTGTTTCGCTTCTTCAGTTTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCGCGTTGCGTTCAATGAAAATTGTGTTTGAAAGGTGATTAGCTTTCGAGTGTGTGTTTTTTATATAAGTGTGGTGTGCCATTCTGGGCTAATCGCGGTGCTTGGAGGATTAATATTTCGTGATATTGTGTATTACACTCGTACGAACAGCTCCCGTGTGGTTTTGAGCCGAAAAGTGAAACAATTTCGTTTGTTTGCGTTTGCGTTGCAAGCAAAACATTTTAAACAATTATAGCAAACAATTAAAAAAAACAAAACAAAACACATATTAAAGCATAGTAGGAAGATCCAACGTGTCTTGCCAAGTGCTTCCATAGTAAAGAAAATTATTCTCTCTCTCCCCATTTGGAATAGCAGATCCCGACCAGCACGACGAGCCGTCGTGTGCTGTGCAGTTGCTGGTGATTTAGTAGTGAATGTGTGTGTGTGCAAATGGTGATTAAAGAAGAAGAAGAAAAAAGAATGTTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGT]




>consensus_3874#1
CCGCCCACGCGTCCGCCCACGCGTCCGGGGATTTTTGTTTCGCTTCTTCAGTTTTTTGAT
CGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCGCGTTGCGTTCAATGAA
AATTGTGTTTGAAAGGTGATTAGCTTTCGAGTGTGTGTTTTTTATATAAGTGTGGTGTGC
CATTCTGGGCTAATCGCGGTGCTTGGAGGATTAATATTTCGTGATATTGTGTATTACACT
CGTACGAACAGCTCCCGTGTGGTTTTGAGCCGAAAAGTGAAACAATTTCGTTTGTTTGCG
TTTGCGTTGCAAGCAAAACATTTTAAACAATTATAGCAAACAATTAAAAAAAACAAAACA
AAACACATATTAAAGCATAGTAGGAAGATCCAACGTGTCTTGCCAAGTGCTTCCATAGTA
AAGAAAATTATTCTCTCTCTCCCCATTTGGAATAGCAGATCCCGACCAGCACGACGAGCC
GTCGTGTGCTGTGCAGTTGCTGGTGATTTAGTAGTGAATGTGTGTGTGTGCAAATGGTGA
TTAAAGAAGAAGAAGAAAAAAGAATGTTATGCAGCCGAATGTGTCTGTGAATGTGTGCAT
CCAGTGTCTGTGT

consensusID : consensus_3874#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [CCGCTCGGGGCAGTGCAAAGTGGTGTACGTTTCTGCTGCTACTGCTGCTGAGTAAGAATCGTGCCCGTTTCTCCTCCTCCTCGCTTACATTTTGTCGATGAGTGGAAAGAAAAAGTGTTTGTTTGGCGTTAAGCAGATCCCGACCAGCACGACGAGCCGTGTGTGCTGTGCAGTGGTGATTGTGATTTAGGTGTGAATTTGTGTGTGCAAATGGTGATTAAAGAAGAAGGAGAAAAAAGAATGCTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGTAGTCGGTGCAGAAATTGAAGTAAAAAAAGTAATAATATTGAAAACAAGCAGTAACG]

[+] EMBL BM651354             [CCGCTCGGGGCAGTGCAAAGTGGTGTACGTTTCTGCTGCTACTGCTGCTGAGTAAGAATCGTGCCCGTTTCTCCTCCTCCTCGCTTACATTTTGTCGATGAGTGGAAAGAAAAAGTGTTTGTTTGGCGTTAAGCAGATCCCGACCAGCACGACGAGCCGTGTGTGCTGTGCAGTGGTGATTGTGATTTAGGTGTGAATTTGTGTGTGCAAATGGTGATTAAAGAAGAAGGAGAAAAAAGAATGCTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGTAGTCGGTGCAGAAATTGAAGTAAAAAAAGTAATAATATTGAAAACAAGCAGTAACG]




>consensus_3874#2
CCGCTCGGGGCAGTGCAAAGTGGTGTACGTTTCTGCTGCTACTGCTGCTGAGTAAGAATC
GTGCCCGTTTCTCCTCCTCCTCGCTTACATTTTGTCGATGAGTGGAAAGAAAAAGTGTTT
GTTTGGCGTTAAGCAGATCCCGACCAGCACGACGAGCCGTGTGTGCTGTGCAGTGGTGAT
TGTGATTTAGGTGTGAATTTGTGTGTGCAAATGGTGATTAAAGAAGAAGGAGAAAAAAGA
ATGCTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGTAGTCGGTGCA
GAAATTGAAGTAAAAAAAGTAATAATATTGAAAACAAGCAGTAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3874#0      CCGGTACGCAGCCAGAGTAGAGCGTCGTCGTGTGTGTCGATCTCGAGATCCGCTCCGGGG 60
consensus_3874#2      ------------------------------------------------------------
consensus_3874#1      ------------------------------------------------------------
                                                                                  

consensus_3874#0      CTCGACTTTTTTTTTGCCTTTGGACGGCGAAAGAAGGGATTTTTGTTTCGCTTCTTCAGT 120
consensus_3874#2      --------------CCGCTCGGGGCAGTGCAAAGTGGTGTACGT-TTCTGCTGCTACTGC 45
consensus_3874#1      --------CCGCCCACGCGTCCGCCCACGCGTCCGGGGATTTTTGTTTCGCTTCTTCAGT 52
                                       *    * *   *      **  *   * **  *** ** * * 

consensus_3874#0      TTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCG-CGTTGCG 179
consensus_3874#2      TGCTGAGTAAGAATCGTGCCCGTTTCTCCTCCTCC---TCGCTTACATTTTGTCGATGAG 102
consensus_3874#1      TTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCG-CGTTGCG 111
                      *  *   *  ** **  *  * * *  ****   *   **   * ** ** * ** ** *

consensus_3874#0      TTCAATGAAAA----------TTGTGTTTGAAAGATCCCGACCAGCACGACGAGCCGTCG 229
consensus_3874#2      TGGAAAGAAAAAGTGTTTGTTTGGCGTTAAGCAGATCCCGACCAGCACGACGAGCCGT-G 161
consensus_3874#1      TTCAATGAAAA----------TTGTGTTTGAAAGGT---GATTAGCTTT-CGAGTGTGTG 157
                      *  ** *****          * * ***    ** *   **  ***    ****     *

consensus_3874#0      TGTGCTGTGCAGT--TGCTG-GTGATTTAGTAGTGAATGTG-TGTGTGTGCAAATGGTGA 285
consensus_3874#2      TGTGCTGTGCAGTGGTGATT-GTGATTTAGGTGTGAATTTG-TGTGTG--CAAATGGTGA 217
consensus_3874#1      TTTTTTATATAAGTGTGGTGTGCCATTCTGGGCTAATCGCGGTGCTTGGAGGATTAATAT 217
                      * *  * *  *    ** *  *  ***  *   * *    * **  **    * *  *  

consensus_3874#0      TTAAAGAAGAAGAAGAAAAAA---GAATGTTATGCAGCCGAATGTGTCTGTG--AATGTG 340
consensus_3874#2      TTAAAGAAGAAGGAGAAAAAA---GAATGCTATGCAGCCGAATGTGTCTGTG--AATGTG 272
consensus_3874#1      TTCGTGATATTGTGTATTACACTCGTACGAACAGCTCCCGTGTGGTTTTGAGCCGAAAAG 277
                      **   **    *   *  * *   * * *    **  ***  **  * ** *   *   *

consensus_3874#0      TGCATCCAGT--GTCTGTGTA-GTCGGTGCAGAAATTGAAGTAAAA-AAAAAATTAAAAC 396
consensus_3874#2      TGCATCCAGT--GTCTGTGTA-GTCGGTGCAGAAATTGAAGTAAAA-AAAGTAATAATAT 328
consensus_3874#1      TGAAACAATTTCGTTTGTTTGCGTTTGCGTTGCAAGCAAAACATTTTAAACAATTATAGC 337
                      ** * * * *  ** *** *  **  * *  * **   **  *    ***  * **    

consensus_3874#0      AAGCAGT-AACGAAAACAA--CAAAAATCAGCCGAAAGGGCGCTGCGAAAACTTGTTCCT 453
consensus_3874#2      TGAAAAC-AA--GCAGTAA--CG------------------------------------- 346
consensus_3874#1      AAACAATTAAAAAAAACAAAACAAAACACATATTAAAGCATAGTAGGAAGATCCAACGTG 397
                          *   **    *  **  *                                      

consensus_3874#0      GCTAAACCGTTGCGCCGCCAATCCAAGCAGCCACAGTCCAGCTCCAGCAGTAGCAGCCAG 513
consensus_3874#2      ------------------------------------------------------------
consensus_3874#1      TCTTGCCAAGTGCTTCCATAGTAAAGAAAATTATTCTCTCTCTCCC-------CATTTGG 450
                                                                                  

consensus_3874#0      GGCAGCAGCATCCAGCGCAACACTGCTCACGCTGCTCACCAGAGTGCTCCCACGTTCCCC 573
consensus_3874#2      ------------------------------------------------------------
consensus_3874#1      AATAGCAG-ATCCCGACCAGCACGACGAGCCGTCGTGTGCTGTGCAGTTGCTGGTGATTT 509
                                                                                  

consensus_3874#0      AACGGTTCCCCCGCTGAAAGGCGCGCCAGTGTGAAAGATTCTAACGAAGCAAGCCGTGCG 633
consensus_3874#2      ------------------------------------------------------------
consensus_3874#1      AGTAGTGAATGTGTGTGTGTGCAAATGGTGATTAAAGAAGAAGAAGAAAAAAGAATGTTA 569
                                                                                  

consensus_3874#0      CTCGCTCTCTCGCTCCAACATTCACACACATACAAAAAGGTCCACACACC 683
consensus_3874#2      --------------------------------------------------
consensus_3874#1      TGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGT---GTCTGTGT--- 613