These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1187 fasta sequence [GTTCGGCTGTGCCGGCGGTACGCAGCACGTGCCGCTGATCGACGGATCGCTTGCTGGGGCGGGGCGGCTGGCCGCCACACAGCACGGCGGGAACTAGCGAACCCGCCTCACCCGTTCGCGCCCGTACAGCGGGGAAAGGTGGAGGCGGGTTGTTTTGCTGGCGGAGGCGCTGCCTCCTGTTCGCAGAGCTTTTTGTGCGTGGCACAGTACGGATCAGTACAGCAGAAGTAATGCCTTCGGTCGTGCACGTAGCACAGGTTCAGCTCCGGATTTTGCATCAGCTTCCGCTCGGTAGTCGTCTGCAGTGTTGGGCACTGCACACGCAGCAAGCAAGCACCCGGTTTCCCATTCAGCCGGCAGCCGATGTGGCGCTTGCGGCAGCAAATGTGGGTTTTCGTGTCCTGCTGTACAACCGGCTGACAGGTTTTGCGATGTATCTCCTTCATGAACGTGGCGTTTGTCAAATGTTCGTTCTTTTCGATACGCCTGTACACTGGCGAACAGTGGCGGATCGGAAGGCAGCGTTCGTCCGGATCGCTACAACCAATTTGCAAAGCTTCCCCTGCAAACGTTCCAAACACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAATCATTCTGTTTCCGTTAGCACTGAACCACACCGTAGCACTCGTCAAGTCCGACTGAACTGAACTTCACGGCAGGGCTGAATGAATGGCAAACTCGCGCTAACGAGCGAACGAGAGTCGAATGGGGATTTTTCTTGTGCGAAGTGTGAGTTCACACGCACAATCGAGCGGGGAATCGGGGTGGGAGACACGAATGAGTGAGAATGTTGCTACTTGTTAGCATATTATTATCTTGAAGAAGGAGGCCCGTCCGATCAGCGGCAAGGCTTGCGAAGGTGGTTGTCACTGGAGAGGAGAGGAGGCGTACATTTCTTTACCCATCTGTGGGTCAGACCGGCCGGTGCTGGGTGGGTTCGTTTCTTCCAGCATATTGGGGATTTCTACTCGCGACAAATCGTGGCAAAAAGAAAAGGATTGCCCTCACGAATGACAACCAATGGCGCAATGGGAATGAATCAGATAATAATTAACAAGAAACGAATGGTTCTCCTCCGTTATGGTGATTCCTTGCAAGAGCATCATCATATGTTTGAGGTGATTTTCTGAATGACCCAGGAAGACACATTTTCT] [-] EMBL BM606677 [GTTCGGCTGTGCCGGCGGTACGCAGCACGTGCCGCTGATCGACGGATCGCTTGCTGGGGCGGGGCGGCTGGCCGCCACACAGCACGGCGGGAACTAGCGAACCCGCCTCACCCGTTCGCGCCCGTACAGCGGGGAAAGGTGGAGGCGGGTTGTTTTGCTGGCGGAGGCGCTGCCTCCTGTTCGCAGAGCTTTTTGTGCGTGGCACAGTACGGATCAGTACAGCAGAAGTAATGCCTTCGGTCGTGCACGTAGCACAGGTTCAGCTCCGGATTTTGCATCAGCTTCCGCTCGGTAGTCGTCTGCAGTGTTGGGCACTGCACACGCAGCAAGCAAGCACCCGGTTTCCCATTCAGCCGGCAGCCGATGTGGCGCTTGCGGCAGCAAATGTGGGTTTTCGTGTCCTGCTGTACAACCGGCTGACAGGTTTTGCGATGTATCTCCTTCATGAACGTGGCGTTTGTCAAATGTTCGTTCTTTTCGATACGCCTGTACACTGGCGAACAGTGGCGGATCGGAAGGCAGCGTTCGTCCGGATCGCTACAACCAATTTGCAAAGCTTCCCCTGCAAACGTTCCAAACACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAATCATTCTGTTTCCGTTAGCACTGAACCACACCGTAGCACTCGTCAAGTCCGACTGAACTGAACTTCACGG ] [+] EMBL BX627241 [ ACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAATCATTCTGTTTCCGTTAGCACTGAACCACACCGTAGCACTCGTCAAGTCCGACTGAACTGAACTTCAAGTCAGGGCTGAATGAATGGCAAACTCGCGCTAACGAGCGAACGAGAGTCGAATGGGGATTTTTCTTGTGCGAAGTGTGAGTTCACACGCACAATCGAGCGGGGAATCGGGGTGGGAGACACGAATGAGTGAGAATGTTGCTACTTGTTAGCATATTATTATCTTGAAGAAGGAGGCCCGTCCGATCAGCGGCAAGGCTTGCGAAGGTGGTTGTCACTGGAGAGGAGAGGAGGCGTACATTTCTTTACCCATCTGTGGGTCAGACCGGCCGGTGCTGGGTGGGTTCGTTTCTTCCAGCATATTGGGGATTTCTACTCGCGACAAATCGTGGCAAAAAGAAAAGGATTGCCCTCACGAATGACAACCAATGGCGCAATGGGAATGAATCAGATAATAATTAACAAGAAACGAATGGTTCTCCTCCGTTATGGTGATTCCTTGCAAGAGCATCATCATATGTTTGAGGTGATTTTCTGAATGACCCAGGAAGACACATTTTCT] consensusID : consensus_3875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CGGTATCGCTAGCTATGTCCGCTGTTCGTACGGATCGNTTGCTTGGTGTTCTGGGCCCTGTTTTGGCCTCCTACTCTAGCTCTGCCTGGGTTACTTATGCGGTTACCCCTGCCNCTCACCGTTTCGCGCCCNGTACTTGCCGGGGATATAGGTGGTATGTCGGTTTGTTTTTGCTTTCGGAGGCGCTGCCTCCTGTTGCGCAGAGCTNTTGTTGTGCTGGCACAGTACGGATCNAGTACANCAGAAGTAATGCCTTCGTCGTGCTACTATAGCACAGGTTCTGCTGCCGGATTTGTGCATNCAGCTTCCCGCTCGGTAGTCGTCTGCAGTGTTGGNCACTGCTCACGCAGCAAGCAAGCACCCTGGTTTCCCATNTCAAGCCGGCAGCCGATGTGGCGCTTGCAGGCAGCAAATGTGGGTTTTCGTGTCCTGCTGTACAACTGGCTGACAGTTTTGCGATGTATCTCCNTCATGAACGTGGCGTTTGTCAAATGTTCGTTCTTTTCGATGCGCACTGTACACTGGCGAACAGTGGCGGATCGGANAGGCAGCGTTCGTCCGGATCGCTACTAACCAATATTTGCAAAGCTTCCCCCTGCAATACGTTCCAAACACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAATCATTCTGTTTACCGGTAGCACTGAACCACACCGTAGCATTAACCTCGGGGATTCTG] [-] EMBL AL695343 [CGGTATCGCTAGCTATGTCCGCTGTTCGTACGGATCGNTTGCTTGGTGTTCTGGGCCCTGTTTTGGCCTCCTACTCTAGCTCTGCCTGGGTTACTTATGCGGTTACCCCTGCCNCTCACCGTTTCGCGCCCNGTACTTGCCGGGGATATAGGTGGTATGTCGGTTTGTTTTTGCTTTCGGAGGCGCTGCCTCCTGTTGCGCAGAGCTNTTGTTGTGCTGGCACAGTACGGATCNAGTACANCAGAAGTAATGCCTTCGTCGTGCTACTATAGCACAGGTTCTGCTGCCGGATTTGTGCATNCAGCTTCCCGCTCGGTAGTCGTCTGCAGTGTTGGNCACTGCTCACGCAGCAAGCAAGCACCCTGGTTTCCCATNTCAAGCCGGCAGCCGATGTGGCGCTTGCAGGCAGCAAATGTGGGTTTTCGTGTCCTGCTGTACAACTGGCTGACAGTTTTGCGATGTATCTCCNTCATGAACGTGGCGTTTGTCAAATGTTCGTTCTTTTCGATGCGCACTGTACACTGGCGAACAGTGGCGGATCGGANAGGCAGCGTTCGTCCGGATCGCTACTAACCAATATTTGCAAAGCTTCCCCCTGCAATACGTTCCAAACACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAATCATTCTGTTTACCGGTAGCACTGAACCACACCGTAGCATTAACCTCGGGGATTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3875#0 GTTCGGCTGTGCCGGCGGTACGCAGCACGTGCCGCTGATCGACGGATCGCTTGCTGGGGC 60 consensus_3875#1 ---CGGTATCGCTAGCTATGTCCGCTGTTCGT-ACGGATCGNTTGCTTGGTGTTCTGGGC 56 *** ** ** * * * * ***** * * * * **** consensus_3875#0 GGGGCGGCTGGCCGCCACAC-AGCACGGCGGGAACTA-----GCGA--ACCCG----CCT 108 consensus_3875#1 CCTGTTTTGGCCTCCTACTCTAGCTCTGCCTGGGTTACTTATGCGGTTACCCCTGCCNCT 116 * * * * ** * *** * ** * ** *** **** ** consensus_3875#0 CACCCGTTCGCGCCCG-----TACAGCGGGGAAAGGTGGA--GGCGGGTTGTTTT-GCTG 160 consensus_3875#1 CACCGTTTCGCGCCCNGTACTTGCCGGGGATATAGGTGGTATGTCGGTTTGTTTTTGCTT 176 **** ********* * * * ** * ****** * *** ******* *** consensus_3875#0 GCGGAGGCGCTGCCTCCTGTT-CGCAGAGCTTTTTGTGCG-TGGCACAGTACGGATCA-G 217 consensus_3875#1 TCGGAGGCGCTGCCTCCTGTTGCGCAGAGCTNTTGTTGTGCTGGCACAGTACGGATCNAG 236 ******************** ********* ** ** * **************** * consensus_3875#0 TACAGCAGAAGTAATGCCTTCGGTCGTGCA--CGTAGCACAGGTTCAGCT-CCGGATTT- 273 consensus_3875#1 TACANCAGAAGTAATGCCTTCG-TCGTGCTACTATAGCACAGGTTCTGCTGCCGGATTTG 295 **** ***************** ****** ************ *** ******** consensus_3875#0 TGCATC-AGCTTCC-GCTCGGTAGTCGTCTGCAGTGTTGGGCACTGCACACGCAGCAAGC 331 consensus_3875#1 TGCATNCAGCTTCCCGCTCGGTAGTCGTCTGCAGTGTTGGNCACTGCTCACGCAGCAAGC 355 ***** ******* ************************* ****** ************ consensus_3875#0 AAGCACCC-GGTTTCCCATTC--AGCCGGCAGCCGATGTGGCGCTTGC-GGCAGCAAATG 387 consensus_3875#1 AAGCACCCTGGTTTCCCATNTCAAGCCGGCAGCCGATGTGGCGCTTGCAGGCAGCAAATG 415 ******** ********** ************************* *********** consensus_3875#0 TGGGTTTTCGTGTCCTGCTGTACAACCGGCTGACAGGTTTTGCGATGTATCTCCTTCATG 447 consensus_3875#1 TGGGTTTTCGTGTCCTGCTGTACAACTGGCTGACAG-TTTTGCGATGTATCTCCNTCATG 474 ************************** ********* ***************** ***** consensus_3875#0 AACGTGGCGTTTGTCAAATGTTCGTTCTTTTCGATACGC-CTGTACACTGGCGAACAGTG 506 consensus_3875#1 AACGTGGCGTTTGTCAAATGTTCGTTCTTTTCGATGCGCACTGTACACTGGCGAACAGTG 534 *********************************** *** ******************** consensus_3875#0 GCGGATCGGAA-GGCAGCGTTCGTCCGGATCGCTAC-AACCAAT--TTGCAAAGCTTCCC 562 consensus_3875#1 GCGGATCGGANAGGCAGCGTTCGTCCGGATCGCTACTAACCAATATTTGCAAAGCTTCCC 594 ********** ************************ ******* ************** consensus_3875#0 C-TGCAA-ACGTTCCAAACACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAAT 620 consensus_3875#1 CCTGCAATACGTTCCAAACACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAAT 654 * ***** **************************************************** consensus_3875#0 CATTCTGTTT-CCGTTAGCACTGAACCACACCGTAGCACTCGTCAAGTCCGACTGAACTG 679 consensus_3875#1 CATTCTGTTTACCGGTAGCACTGAACCACACCGTAGCA----TTAACCTCGGGGATTCTG 710 ********** *** *********************** * ** ** *** consensus_3875#0 AACTTCACGGCAGGGCTGAATGAATGGCAAACTCGCGCTAACGAGCGAACGAGAGTCGAA 739 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 TGGGGATTTTTCTTGTGCGAAGTGTGAGTTCACACGCACAATCGAGCGGGGAATCGGGGT 799 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 GGGAGACACGAATGAGTGAGAATGTTGCTACTTGTTAGCATATTATTATCTTGAAGAAGG 859 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 AGGCCCGTCCGATCAGCGGCAAGGCTTGCGAAGGTGGTTGTCACTGGAGAGGAGAGGAGG 919 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 CGTACATTTCTTTACCCATCTGTGGGTCAGACCGGCCGGTGCTGGGTGGGTTCGTTTCTT 979 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 CCAGCATATTGGGGATTTCTACTCGCGACAAATCGTGGCAAAAAGAAAAGGATTGCCCTC 1039 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 ACGAATGACAACCAATGGCGCAATGGGAATGAATCAGATAATAATTAACAAGAAACGAAT 1099 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 GGTTCTCCTCCGTTATGGTGATTCCTTGCAAGAGCATCATCATATGTTTGAGGTGATTTT 1159 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 CTGAATGACCCAGGAAGACACATTTTCT 1187 consensus_3875#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||