These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 840 fasta sequence [CCAGAATCGCCAGGATGTNAAAGCTTCAATCAAATCAGTATTGTTGATTACACATCGAGCTAACCGCGAAGCTCGCCTCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTTTTCCCATCAGAACCCGGAACCAAAAGTGTCCATTATTTACATCACAATCAAATGCGCTCCCCCACCTACCTACTTTACACTGAAGGAGGGTTTATAAAAAAACAATAAAAAAAATGTTGTGCGATGAAATTACCTGCACACATGCCAGCAGCGTGGGTTGTAACACAAGCCCCACATGCTTTGCCGCGCATATGGGGAACATGTGGCATCGGCCAAGAGTGTTGGGCAGGTGCGCGGGCTATATTACGTTCAAATTTCATCAACCCGTTCGCGCGTCACGTGCGGTTTTGGTTGCGAATTACTGCGGAACGCAGGAACTAATTTCGATCTCATATGAAATGCACCGGAAGAGTGATGTGTGCGCTCTACTGCTATGCCGTATAATCCCTTTTTTGGGGCGCACACACGAGCGAGGTAGGAAGAAAAACAAGCCCCAACAAATTCAGTTGCCAAAATTTCAAAGCATACGCGGGCAGATGATAAAGCCGGACACATGCGATGGATTTGTGTGTGTGTGTGTGTGAGAGAGCGTCGTTTTTATCACCCTTTTTGAGCGCGCGAACGTGTGCTCCCGCCCCTATTCGCTCTGGACAGTTGAAGAAGGAAAGGTGGAAGGTATCACATCCGGCTCGGGCACACCGCGTCCGAGTTCCCTCCGGTTTTTGGTGGCGGTTCGTCACTGCCGAGTAATTAGCATTTAAACAAAATCATCAT] [+] EMBL AL696891 [CCAGAATCGCCAGGATGTNAAAGCTTCAATCAAATCAGTATTGTTGATTACACATCGAGCTAACCGCGAAGCTCGCCTCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTTTTCCCATCAGAACCCGGAACCAAAAGTGTCCATTATTTACATCACAATCAAATGCGCTCCCCCACCTACCTACTTTACACTGAAGGAGGGTTTATAAAAAAACAATAAAAAAAATGTTGTGCGATGAAATTACCTGCACACATGCCAGCAGCGTGGGTTGTAACACAAGCCCCACATGCTTTGCCGCGCATATGGGGAACATGTGGCATCGGCCAAGAGTGTTGGGCAGGTGCGCGGGCTATATTACGTTCAAATTTCATCAACCCGTTCGCGCGTCACGTGCGGTTTTGGTTGCGAATTACTGCGGAACGCAGGAACTAATTTCGATCTCATATGAAATGCACCGGAAGAGTGATGTGTGCGCTCTACTGCTATGCCGTATAATCCCTTTTTTGGGGCGCACACACGAGCGAG ] [+] EMBL BM631259 [ ccgCACAAGCCCCACATGCTTTGCCGCGCATATGGGGAACATGTGGCATCGG CAAGAGTGTTGGGCAGGTGCGCGGGCTATATTACGTTCAAATTTCATCAACCCGTTCGCGCGTCACGTGCGGTTTTGGTTGCGAATTACTGCGGAACGCAGGAACTAATTTCGATCTCATATGAAATGCACCGGAAGAGTGATGTGTGCGCTCTACTGCTATGCCGTATAATCCCTTTTTTGGGGCGCACACACGAGCGAGGTAGGAAGAAAAACAAGCCCCAACAAATTCAGTTGCCAAAATTTCAAAGCATACGCGGGCAGATGATAAAGCCGGACACATGCGATGGATTTGTGTGTGTGTGTGTGTGAGAGAGCGTCGTTTTTATCACCCTTTTTGAGCGCGCGAACGTGTGCTCCCGCCCCTATTCGCTCTGGACAGTTGAAGAAGGAAAGGTGGAAGGTATCACATCCGGCTCGGGCACACCGCGTCCGAGTTCCCTCCGGTTTTTGGTGGCGGTTCGTCACTGCCGAGTAATTAGCATTTAAACAAAATCATCAT] consensusID : consensus_3877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [NAGTAATAGCACAGCACTTAACTATCACTTAGCTTGTAAATTCCAGTGCATCAACTTTGCTTGCGGCAATGTACATTGCAAACCGAGCGCTCTATATATAAATGCATTTTATAGTACTGTGCAAGTGGCAAAAGCTTCAAATCAAAATCAGTATTGTTGATTACACATCGAGCTAACCGCGAAGCTCGCCCTCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTGTTCCCATCAGAACCCGGAACCAAAAGTGTCCATAATTTACATCACAATCAAATGCGCTCCCCCACCTACCTACTTCACACTGAAGCAGGGCTTTATATAAAAACCACTAAAACAAATGTTGTCGCGATGCAACATTACCTGCACACATGCCAGCACACGTGGGTTGTAACACAAGCCCCACATGCTTTGCCGCGCATATATGGGAACATGTGGCATCGGGCAAGAGTGTTCGGGCAGGTGCGC] [+] EMBL AL695372 [NAGTAATAGCACAGCACTTAACTATCACTTAGCTTGTAAATTCCAGTGCATCAACTTTGCTTGCGGCAATGTACATTGCAAACCGAGCGCTCTATATATAAATGCATTTTATAGTACTGTGCAAGTGGCAAAAGCTTCAAATCAAAATCAGTATTGTTGATTACACATCGAGCTAACCGCGAAGCTCGCCCTCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTGTTCCCATCAGAACCCGGAACCAAAAGTGTCCATAATTTACATCACAATCAAATGCGCTCCCCCACCTACCTACTTCACACTGAAGCAGGGCTTTATATAAAAACCACTAAAACAAATGTTGTCGCGATGCAACATTACCTGCACACATGCCAGCACACGTGGGTTGTAACACAAGCCCCACATGCTTTGCCGCGCATATATGGGAACATGTGGCATCGGGCAAGAGTGTTCGGGCAGGTGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3877#0 ------------------------------------------------------------ consensus_3877#1 NAGTAATAGCACAGCACTTAACTATCACTTAGCTTGTAAATTCCAGTGCATCAACTTTGC 60 consensus_3877#0 --------------------------------------------------CCAGAATCGC 10 consensus_3877#1 TTGCGGCAATGTACATTGCAAACCGAGCGCTCTATATATAAATGCATTTTATAGTACTGT 120 ** * * consensus_3877#0 -CAGGATGTNAAAGCTTCAATC--AAATCAGTATTGTTGATTACACATCGAGCTAACCGC 67 consensus_3877#1 GCAAGTGGCAAAAGCTTCAAATCAAAATCAGTATTGTTGATTACACATCGAGCTAACCGC 180 ** * * ********** ************************************ consensus_3877#0 GAAGCTCGCC-TCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTT 126 consensus_3877#1 GAAGCTCGCCCTCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTG 240 ********** ************************************************ consensus_3877#0 TTCCCATCAGAACCCGGAACCAAAAGTGTCCATTATTTACATCACAATCAAATGCGCTCC 186 consensus_3877#1 TTCCCATCAGAACCCGGAACCAAAAGTGTCCATAATTTACATCACAATCAAATGCGCTCC 300 ********************************* ************************** consensus_3877#0 CCCACCTACCTACTTTACACTGAAGGAGGG-TTTATAAAAAAACAA-TAAAAAAAATGTT 244 consensus_3877#1 CCCACCTACCTACTTCACACTGAAGCAGGGCTTTATATAAAAACCACTAAAACAAATGTT 360 *************** ********* **** ****** ****** * ***** ******* consensus_3877#0 GT-GCGATGAAA--TTACCTGCACACATGCCAGCA-GCGTGGGTTGTAACACAAGCCCCA 300 consensus_3877#1 GTCGCGATGCAACATTACCTGCACACATGCCAGCACACGTGGGTTGTAACACAAGCCCCA 420 ** ****** ** ********************* *********************** consensus_3877#0 CATGCTTTGCCGCGCATATG-GGGAACATGTGGCATCGGCCAAGAGTGTT-GGGCAGGTG 358 consensus_3877#1 CATGCTTTGCCGCGCATATATGGGAACATGTGGCATCGGGCAAGAGTGTTCGGGCAGGTG 480 ******************* ****************** ********** ********* consensus_3877#0 CGCGGGCTATATTACGTTCAAATTTCATCAACCCGTTCGCGCGTCACGTGCGGTTTTGGT 418 consensus_3877#1 CGC--------------------------------------------------------- 483 *** consensus_3877#0 TGCGAATTACTGCGGAACGCAGGAACTAATTTCGATCTCATATGAAATGCACCGGAAGAG 478 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 TGATGTGTGCGCTCTACTGCTATGCCGTATAATCCCTTTTTTGGGGCGCACACACGAGCG 538 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 AGGTAGGAAGAAAAACAAGCCCCAACAAATTCAGTTGCCAAAATTTCAAAGCATACGCGG 598 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 GCAGATGATAAAGCCGGACACATGCGATGGATTTGTGTGTGTGTGTGTGTGAGAGAGCGT 658 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 CGTTTTTATCACCCTTTTTGAGCGCGCGAACGTGTGCTCCCGCCCCTATTCGCTCTGGAC 718 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 AGTTGAAGAAGGAAAGGTGGAAGGTATCACATCCGGCTCGGGCACACCGCGTCCGAGTTC 778 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 CCTCCGGTTTTTGGTGGCGGTTCGTCACTGCCGAGTAATTAGCATTTAAACAAAATCATC 838 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 AT 840 consensus_3877#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||