These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence [CCGGTTTGCTCGCGTCGAGTTTGCGAATCTGTCTCACCCCAGACATATAAGCATTTACAATAGGGTGCTTTGTTCGCAAGTGTTTTCATGTCTCATTACACATGATCTTCGCATATCATATCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGTTGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAAAACATATCTGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAGCACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGAGCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAACTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCACACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAGGAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAAATAGTCTACTCGCAAAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTGGATCTGCGTTTGCTTCTTAGTATATCGTACAAGCACTATCAACTTTCACTCTTTGTT] [+] EMBL BM591478 [CCGGTTTGCTCGCGTCGAGTTTGCGAATCTGTCTCACCCCAGACATATAAGCATTTACAATAGGGTGCTTTGTTCGCAAGTGTTTTCATGTCTCATTACACATGATCTTCGCATATCATATCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGTTGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAAAACATATCTGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAGCACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGAGCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAACTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCACACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAGGAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAAATAGTCTACTCGCAAAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTGGATCTGCGTTTGCTTCTTAGTATATCGTACAAGCACTATCAACTTTCACTCTTTGTT] consensusID : consensus_3878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [GATCCCCCGAGGTTAATGGCAAACTTCGAAGAAACAATTGCGGATATGACCGCGTTGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGTGATACACCACAAAACATATCGGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAGCACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGAGCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAACTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCACACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAGAAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAAATAGTCTACTCGCAGAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTGATCTGCGTNCGCCTTCTTAGATATATCGTACAAACACTATCCAACCTTTTCACTCTTTGTTCTTACTACTGAATCAGCCTCCCGAATTAAACCCCACTAAANAATCACTTATCAAAACCAACCCACAACCGGCACACGTCNAACATACAGCGTTAAACG] [+] EMBL AL695383 [GATCCCCCGAGGTTAATGGCAAACTTCGAAGAAACAATTGCGGATATGACCGCGTTGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGTGATACACCACAAAACATATCGGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAGCACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGAGCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAACTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCACACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAGAAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAAATAGTCTACTCGCAGAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTGATCTGCGTNCGCCTTCTTAGATATATCGTACAAACACTATCCAACCTTTTCACTCTTTGTTCTTACTACTGAATCAGCCTCCCGAATTAAACCCCACTAAANAATCACTTATCAAAACCAACCCACAACCGGCACACGTCNAACATACAGCGTTAAACG] consensusID : consensus_3878#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [CCGCCAAACCCCACTGGCGCACGCTTGTAACATGTGTTCGTGATAGTTATAAAAGTTTTATGTATTTTGTTACGGTTTATTTTGATGCTGCTGTGTCTTGCCAGCATATCATATCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGTTGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAAAACATATCTGTGGCAAA] [+] EMBL BM655953 [CCGCCAAACCCCACTGGCGCACGCTTGTAACATGTGTTCGTGATAGTTATAAAAGTTTTATGTATTTTGTTACGGTTTATTTTGATGCTGCTGTGTCTTGCCAGCATATCATATCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGTTGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAAAACATATCTGTGGCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3878#0 CCGGTTTGCTCGCGTCGAGTTTGCGAATCTGTCTCACCCCAGACATATAAGCATTTACAA 60 consensus_3878#1 ------------------------------------------------------------ consensus_3878#2 -------CCGCCAAACCCCACTGGCGCACGCTTGTAACATGTGTTCGTGATAGTTATAAA 53 consensus_3878#0 TAGGGTGCTTTGTTCGCAAGTGTTTTCATGTCTCATTACACATGATCTTCGCATATCATA 120 consensus_3878#1 ----------------------------------------------------------GA 2 consensus_3878#2 AGTTTTATGTATTTTGTTACGGTTTATTTTGATGCTGCTGTGTCTTGCCAGCATATCATA 113 * consensus_3878#0 TCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGT 180 consensus_3878#1 TCCCCCGAGGTT----AATGGCAAA--CTTCGAAGAAACAATT-GCGGATATGACCGCGT 55 consensus_3878#2 TCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGT 173 ** *** * * ******* **************** **************** consensus_3878#0 TGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAA 240 consensus_3878#1 TGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGG-TGATACACCACAA 114 consensus_3878#2 TGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAA 233 ********************************************** ********* *** consensus_3878#0 AACATATCTGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAG 300 consensus_3878#1 AACATATCGGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAG 174 consensus_3878#2 AACATATCTGTGGCAAA------------------------------------------- 250 ******** ******** consensus_3878#0 CACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGA 360 consensus_3878#1 CACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGA 234 consensus_3878#2 ------------------------------------------------------------ consensus_3878#0 GCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAA 420 consensus_3878#1 GCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAA 294 consensus_3878#2 ------------------------------------------------------------ consensus_3878#0 CTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCAC 480 consensus_3878#1 CTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCAC 354 consensus_3878#2 ------------------------------------------------------------ consensus_3878#0 ACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAG 540 consensus_3878#1 ACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAG 414 consensus_3878#2 ------------------------------------------------------------ consensus_3878#0 GAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAA 600 consensus_3878#1 AAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAA 474 consensus_3878#2 ------------------------------------------------------------ consensus_3878#0 ATAGTCTACTCGCAAAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTGGATCTG 660 consensus_3878#1 ATAGTCTACTCGCAGAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTG-ATCTG 533 consensus_3878#2 ------------------------------------------------------------ consensus_3878#0 CGTTTGC-TTCTTAG-TATATCGTACAAGCACTATCAA---CTTTCACTCTTTGTT---- 711 consensus_3878#1 CGTNCGCCTTCTTAGATATATCGTACAAACACTATCCAACCTTTTCACTCTTTGTTCTTA 593 consensus_3878#2 ------------------------------------------------------------ consensus_3878#0 ------------------------------------------------------------ consensus_3878#1 CTACTGAATCAGCCTCCCGAATTAAACCCCACTAAANAATCACTTATCAAAACCAACCCA 653 consensus_3878#2 ------------------------------------------------------------ consensus_3878#0 ---------------------------------- consensus_3878#1 CAACCGGCACACGTCNAACATACAGCGTTAAACG 687 consensus_3878#2 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||