cluster # 3878

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Anopheles gambiae
cluster # 3878 cluster # 3878 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3878#0 length = 711 sequences # 1

consensus_3878#1 length = 687 sequences # 1
consensus_3878#2 length = 250 sequences # 1

consensusID : consensus_3878#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 711
fasta sequence

                              [CCGGTTTGCTCGCGTCGAGTTTGCGAATCTGTCTCACCCCAGACATATAAGCATTTACAATAGGGTGCTTTGTTCGCAAGTGTTTTCATGTCTCATTACACATGATCTTCGCATATCATATCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGTTGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAAAACATATCTGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAGCACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGAGCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAACTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCACACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAGGAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAAATAGTCTACTCGCAAAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTGGATCTGCGTTTGCTTCTTAGTATATCGTACAAGCACTATCAACTTTCACTCTTTGTT]

[+] EMBL BM591478             [CCGGTTTGCTCGCGTCGAGTTTGCGAATCTGTCTCACCCCAGACATATAAGCATTTACAATAGGGTGCTTTGTTCGCAAGTGTTTTCATGTCTCATTACACATGATCTTCGCATATCATATCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGTTGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAAAACATATCTGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAGCACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGAGCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAACTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCACACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAGGAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAAATAGTCTACTCGCAAAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTGGATCTGCGTTTGCTTCTTAGTATATCGTACAAGCACTATCAACTTTCACTCTTTGTT]




>consensus_3878#0
CCGGTTTGCTCGCGTCGAGTTTGCGAATCTGTCTCACCCCAGACATATAAGCATTTACAA
TAGGGTGCTTTGTTCGCAAGTGTTTTCATGTCTCATTACACATGATCTTCGCATATCATA
TCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGT
TGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAA
AACATATCTGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAG
CACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGA
GCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAA
CTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCAC
ACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAG
GAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAA
ATAGTCTACTCGCAAAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTGGATCTG
CGTTTGCTTCTTAGTATATCGTACAAGCACTATCAACTTTCACTCTTTGTT

consensusID : consensus_3878#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [GATCCCCCGAGGTTAATGGCAAACTTCGAAGAAACAATTGCGGATATGACCGCGTTGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGTGATACACCACAAAACATATCGGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAGCACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGAGCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAACTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCACACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAGAAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAAATAGTCTACTCGCAGAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTGATCTGCGTNCGCCTTCTTAGATATATCGTACAAACACTATCCAACCTTTTCACTCTTTGTTCTTACTACTGAATCAGCCTCCCGAATTAAACCCCACTAAANAATCACTTATCAAAACCAACCCACAACCGGCACACGTCNAACATACAGCGTTAAACG]

[+] EMBL AL695383             [GATCCCCCGAGGTTAATGGCAAACTTCGAAGAAACAATTGCGGATATGACCGCGTTGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGTGATACACCACAAAACATATCGGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAGCACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGAGCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAACTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCACACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAGAAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAAATAGTCTACTCGCAGAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTGATCTGCGTNCGCCTTCTTAGATATATCGTACAAACACTATCCAACCTTTTCACTCTTTGTTCTTACTACTGAATCAGCCTCCCGAATTAAACCCCACTAAANAATCACTTATCAAAACCAACCCACAACCGGCACACGTCNAACATACAGCGTTAAACG]




>consensus_3878#1
GATCCCCCGAGGTTAATGGCAAACTTCGAAGAAACAATTGCGGATATGACCGCGTTGTGG
ACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGTGATACACCACAAAACATA
TCGGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAGCACGCA
TCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGAGCGTGT
TTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAACTAGCT
GTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCACACAAAC
TTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAGAAAGGA
AACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAAATAGTC
TACTCGCAGAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTGATCTGCGTNCGC
CTTCTTAGATATATCGTACAAACACTATCCAACCTTTTCACTCTTTGTTCTTACTACTGA
ATCAGCCTCCCGAATTAAACCCCACTAAANAATCACTTATCAAAACCAACCCACAACCGG
CACACGTCNAACATACAGCGTTAAACG

consensusID : consensus_3878#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [CCGCCAAACCCCACTGGCGCACGCTTGTAACATGTGTTCGTGATAGTTATAAAAGTTTTATGTATTTTGTTACGGTTTATTTTGATGCTGCTGTGTCTTGCCAGCATATCATATCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGTTGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAAAACATATCTGTGGCAAA]

[+] EMBL BM655953             [CCGCCAAACCCCACTGGCGCACGCTTGTAACATGTGTTCGTGATAGTTATAAAAGTTTTATGTATTTTGTTACGGTTTATTTTGATGCTGCTGTGTCTTGCCAGCATATCATATCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGTTGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAAAACATATCTGTGGCAAA]




>consensus_3878#2
CCGCCAAACCCCACTGGCGCACGCTTGTAACATGTGTTCGTGATAGTTATAAAAGTTTTA
TGTATTTTGTTACGGTTTATTTTGATGCTGCTGTGTCTTGCCAGCATATCATATCGTCCG
GCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGTTGTGGAC
CATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAAAACATAT
CTGTGGCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3878#0      CCGGTTTGCTCGCGTCGAGTTTGCGAATCTGTCTCACCCCAGACATATAAGCATTTACAA 60
consensus_3878#1      ------------------------------------------------------------
consensus_3878#2      -------CCGCCAAACCCCACTGGCGCACGCTTGTAACATGTGTTCGTGATAGTTATAAA 53
                                                                                  

consensus_3878#0      TAGGGTGCTTTGTTCGCAAGTGTTTTCATGTCTCATTACACATGATCTTCGCATATCATA 120
consensus_3878#1      ----------------------------------------------------------GA 2
consensus_3878#2      AGTTTTATGTATTTTGTTACGGTTTATTTTGATGCTGCTGTGTCTTGCCAGCATATCATA 113
                                                                                 *

consensus_3878#0      TCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGT 180
consensus_3878#1      TCCCCCGAGGTT----AATGGCAAA--CTTCGAAGAAACAATT-GCGGATATGACCGCGT 55
consensus_3878#2      TCGTCCGGCATCGACAAGTGGCAAAACCTTCGAAGAAACAATTTGCGGATATGACCGCGT 173
                      **  ***   *     * *******  **************** ****************

consensus_3878#0      TGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAA 240
consensus_3878#1      TGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGG-TGATACACCACAA 114
consensus_3878#2      TGTGGACCATTTTTGTCACATAGTGCATCCTGGTTAAGCGATCAGGGTGATACACCGCAA 233
                      ********************************************** ********* ***

consensus_3878#0      AACATATCTGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAG 300
consensus_3878#1      AACATATCGGTGGCAAAAAGAAAACAGTGTCCAAAGACGGTCGTAGCAGTTCCGCAAAAG 174
consensus_3878#2      AACATATCTGTGGCAAA------------------------------------------- 250
                      ******** ********                                           

consensus_3878#0      CACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGA 360
consensus_3878#1      CACGCATCTAATTCATTCTGGAGTTCGATCCTGCGCACCCCTGTATTGCATAGAATATGA 234
consensus_3878#2      ------------------------------------------------------------
                                                                                  

consensus_3878#0      GCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAA 420
consensus_3878#1      GCGTGTTTGTCACGTGGGTTTGGAACAAGCTCCCGCGCCGGTAAAGAGGCACACAGTGAA 294
consensus_3878#2      ------------------------------------------------------------
                                                                                  

consensus_3878#0      CTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCAC 480
consensus_3878#1      CTAGCTGTGAAATGAATGTTCCGTAAGCAGCATATATACGCTAAGCTAAACGCCTAGCAC 354
consensus_3878#2      ------------------------------------------------------------
                                                                                  

consensus_3878#0      ACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAG 540
consensus_3878#1      ACAAACTTAACCGGAAAAGAGGAAGATACAAACTCAAACAAAGGGAACATTTCTCAATAG 414
consensus_3878#2      ------------------------------------------------------------
                                                                                  

consensus_3878#0      GAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAA 600
consensus_3878#1      AAAGGAAACCAACCGACGGTCAAATTATATAGCCACAACTTTGGTCCTAGTGTCATTTAA 474
consensus_3878#2      ------------------------------------------------------------
                                                                                  

consensus_3878#0      ATAGTCTACTCGCAAAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTGGATCTG 660
consensus_3878#1      ATAGTCTACTCGCAGAATCCTTTCCCCGAAGTGAGAGGAACACAAGTGGCAGTG-ATCTG 533
consensus_3878#2      ------------------------------------------------------------
                                                                                  

consensus_3878#0      CGTTTGC-TTCTTAG-TATATCGTACAAGCACTATCAA---CTTTCACTCTTTGTT---- 711
consensus_3878#1      CGTNCGCCTTCTTAGATATATCGTACAAACACTATCCAACCTTTTCACTCTTTGTTCTTA 593
consensus_3878#2      ------------------------------------------------------------
                                                                                  

consensus_3878#0      ------------------------------------------------------------
consensus_3878#1      CTACTGAATCAGCCTCCCGAATTAAACCCCACTAAANAATCACTTATCAAAACCAACCCA 653
consensus_3878#2      ------------------------------------------------------------
                                                                                  

consensus_3878#0      ----------------------------------
consensus_3878#1      CAACCGGCACACGTCNAACATACAGCGTTAAACG 687
consensus_3878#2      ----------------------------------