cluster # 3879

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Anopheles gambiae
cluster # 3879 cluster # 3879 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3879#0 length = 715 sequences # 1

consensus_3879#1 length = 679 sequences # 1
consensus_3879#2 length = 520 sequences # 1

consensusID : consensus_3879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 715
fasta sequence

                              [TTGTAAGTTTGGACTTTAATGGTATGTGTTTTAACAATAATAATCTATGAATTATGTTTTTCCCCGTTCCGAACGATAGCAATGAGCGGTAATGTAGGCTTGGCCATCACGCAAGTGTTCAATCTAATCTTCATGTGCCAGTGGGGCATGCGACAAACGGCCGAGTTGGAAAATCAAATGACATCCGTCGAGCGTGTCGTAGAGTACGCCGAGGTCGACCCAGAGCCATCACTGGTGTCAATCGGTAAACACAAACCACCAGCCGACTGGCCGACCAAGGGTGCCATACGATTCGAGCATTTTTCGTTACGTTACTCGGCCCAATCAAATTCGGTTCTGCGAGACCTCAATATGTCAATAAACGCGGGCGAAAAGATAGGCATCGTCGGAAGGACGGGCGCAGGGAAATCGTCCATCATCCAGGCCCTGTTTCGATTGGCGGATTTCAATTATTCCACAAGATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTGGACCCCTTCAAGCAGCACGGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAACTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTGGCGCGAGCTATTCTTCGCAACAATCCCCATCCTGATTCTGGATGAAGCCACTGCCAACGT]

[+] EMBL BX608417             [TTGTAAGTTTGGACTTTAATGGTATGTGTTTTAACAATAATAATCTATGAATTATGTTTTTCCCCGTTCCGAACGATAGCAATGAGCGGTAATGTAGGCTTGGCCATCACGCAAGTGTTCAATCTAATCTTCATGTGCCAGTGGGGCATGCGACAAACGGCCGAGTTGGAAAATCAAATGACATCCGTCGAGCGTGTCGTAGAGTACGCCGAGGTCGACCCAGAGCCATCACTGGTGTCAATCGGTAAACACAAACCACCAGCCGACTGGCCGACCAAGGGTGCCATACGATTCGAGCATTTTTCGTTACGTTACTCGGCCCAATCAAATTCGGTTCTGCGAGACCTCAATATGTCAATAAACGCGGGCGAAAAGATAGGCATCGTCGGAAGGACGGGCGCAGGGAAATCGTCCATCATCCAGGCCCTGTTTCGATTGGCGGATTTCAATTATTCCACAAGATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTGGACCCCTTCAAGCAGCACGGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAACTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTGGCGCGAGCTATTCTTCGCAACAATCCCCATCCTGATTCTGGATGAAGCCACTGCCAACGT]




>consensus_3879#0
TTGTAAGTTTGGACTTTAATGGTATGTGTTTTAACAATAATAATCTATGAATTATGTTTT
TCCCCGTTCCGAACGATAGCAATGAGCGGTAATGTAGGCTTGGCCATCACGCAAGTGTTC
AATCTAATCTTCATGTGCCAGTGGGGCATGCGACAAACGGCCGAGTTGGAAAATCAAATG
ACATCCGTCGAGCGTGTCGTAGAGTACGCCGAGGTCGACCCAGAGCCATCACTGGTGTCA
ATCGGTAAACACAAACCACCAGCCGACTGGCCGACCAAGGGTGCCATACGATTCGAGCAT
TTTTCGTTACGTTACTCGGCCCAATCAAATTCGGTTCTGCGAGACCTCAATATGTCAATA
AACGCGGGCGAAAAGATAGGCATCGTCGGAAGGACGGGCGCAGGGAAATCGTCCATCATC
CAGGCCCTGTTTCGATTGGCGGATTTCAATTATTCCACAAGATCCGATTCTGTTTTCCGG
AACGTTGCGGGCGAATTTGGACCCCTTCAAGCAGCACGGCGATGAGGCACTTTGGAATGC
GCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAACTGGACGGTAA
AATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTGGCGCG
AGCTATTCTTCGCAACAATCCCCATCCTGATTCTGGATGAAGCCACTGCCAACGT

consensusID : consensus_3879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 679
fasta sequence

                              [TCCCGAGGTTNATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTAGACCCCTTCAAGCAGCACAGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAATTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTAGCGCGAGCTATTCTTCGAAACAATCCCATCCTGATTCTGGATGAAGCCACGTGCAACGTCGATCCTGAAACTGATAATCTCATTCAAAAAACCATTCGAGAGCAATTTGAACGATGTACTGTTTCTAACAATAGCGCATCGCTTACACACTGTCATGGATAGTGATCGGGTGTTGGTAATGGACGCAGGTAAAGCCATCGAGTTGGCGCATCCTTACGAACTGCTGCAACGAACGGACGGTGCTCTGAAGCGGTTAGTCTGACGGAATGGCAGGAATCTACAGCGCAACAGTCACTGGTATAGCTTATCAACGCTTACGGAACACGATTGACGCAACCGAGCAGCCACTCCAAATGGTTCCAACGGTGCGAAAATGGGTATTCGATGCCAAGCGCAANAATACAANAGGATGGCCGCATACATGTTCCATGCATGGTGCGATGAAGGGATCAACTGGGGTCCCTCCTCACCATG]

[+] EMBL AL695408             [TCCCGAGGTTNATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTAGACCCCTTCAAGCAGCACAGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAATTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTAGCGCGAGCTATTCTTCGAAACAATCCCATCCTGATTCTGGATGAAGCCACGTGCAACGTCGATCCTGAAACTGATAATCTCATTCAAAAAACCATTCGAGAGCAATTTGAACGATGTACTGTTTCTAACAATAGCGCATCGCTTACACACTGTCATGGATAGTGATCGGGTGTTGGTAATGGACGCAGGTAAAGCCATCGAGTTGGCGCATCCTTACGAACTGCTGCAACGAACGGACGGTGCTCTGAAGCGGTTAGTCTGACGGAATGGCAGGAATCTACAGCGCAACAGTCACTGGTATAGCTTATCAACGCTTACGGAACACGATTGACGCAACCGAGCAGCCACTCCAAATGGTTCCAACGGTGCGAAAATGGGTATTCGATGCCAAGCGCAANAATACAANAGGATGGCCGCATACATGTTCCATGCATGGTGCGATGAAGGGATCAACTGGGGTCCCTCCTCACCATG]




>consensus_3879#1
TCCCGAGGTTNATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTAGACCCCTTCAA
GCAGCACAGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGT
TTCAGCGATGGAAGGAAAATTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCAT
GGGACAACGGCAACTCGTGTGTTTAGCGCGAGCTATTCTTCGAAACAATCCCATCCTGAT
TCTGGATGAAGCCACGTGCAACGTCGATCCTGAAACTGATAATCTCATTCAAAAAACCAT
TCGAGAGCAATTTGAACGATGTACTGTTTCTAACAATAGCGCATCGCTTACACACTGTCA
TGGATAGTGATCGGGTGTTGGTAATGGACGCAGGTAAAGCCATCGAGTTGGCGCATCCTT
ACGAACTGCTGCAACGAACGGACGGTGCTCTGAAGCGGTTAGTCTGACGGAATGGCAGGA
ATCTACAGCGCAACAGTCACTGGTATAGCTTATCAACGCTTACGGAACACGATTGACGCA
ACCGAGCAGCCACTCCAAATGGTTCCAACGGTGCGAAAATGGGTATTCGATGCCAAGCGC
AANAATACAANAGGATGGCCGCATACATGTTCCATGCATGGTGCGATGAAGGGATCAACT
GGGGTCCCTCCTCACCATG

consensusID : consensus_3879#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [GAGGCCAAGAATCGGCACGAGGAAGATAGGCATCGTCGGAAGGACGGGCGCAGGAAATCGTCCATCATCCAGGCCCTGTTTCGATTGGCGGTTAACGAAGGAATAATACGCATCGACGGCGTGGACATTGGCACACTCGGATTGCACGATCTGCGCAAGCGGATTTCAATTATTCCACAAGATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTAGACCCCTTCAAGCAGCACAGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAATTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTAGCGCGAGCTATTCTTCGAAACAAGTCCCATCCTGATTCTGGATGAAGCCACTGGCAACGTCGGATCCTGAAACTGATAATCTACATTCACANACAACCATTCGAGAGCAATTTGAACGATGTACTGTATTTAACAATAGCGCATC]

[+] EMBL BX468348             [GAGGCCAAGAATCGGCACGAGGAAGATAGGCATCGTCGGAAGGACGGGCGCAGGAAATCGTCCATCATCCAGGCCCTGTTTCGATTGGCGGTTAACGAAGGAATAATACGCATCGACGGCGTGGACATTGGCACACTCGGATTGCACGATCTGCGCAAGCGGATTTCAATTATTCCACAAGATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTAGACCCCTTCAAGCAGCACAGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAATTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTAGCGCGAGCTATTCTTCGAAACAAGTCCCATCCTGATTCTGGATGAAGCCACTGGCAACGTCGGATCCTGAAACTGATAATCTACATTCACANACAACCATTCGAGAGCAATTTGAACGATGTACTGTATTTAACAATAGCGCATC]




>consensus_3879#2
GAGGCCAAGAATCGGCACGAGGAAGATAGGCATCGTCGGAAGGACGGGCGCAGGAAATCG
TCCATCATCCAGGCCCTGTTTCGATTGGCGGTTAACGAAGGAATAATACGCATCGACGGC
GTGGACATTGGCACACTCGGATTGCACGATCTGCGCAAGCGGATTTCAATTATTCCACAA
GATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTAGACCCCTTCAAGCAGCACAGC
GATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATG
GAAGGAAAATTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGG
CAACTCGTGTGTTTAGCGCGAGCTATTCTTCGAAACAAGTCCCATCCTGATTCTGGATGA
AGCCACTGGCAACGTCGGATCCTGAAACTGATAATCTACATTCACANACAACCATTCGAG
AGCAATTTGAACGATGTACTGTATTTAACAATAGCGCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3879#0      TTGTAAGTTTGGACTTTAATGGTATGTGTTTTAACAATAATAATCTATGAATTATGTTTT 60
consensus_3879#2      ------------------------------------------------------------
consensus_3879#1      ------TCCCGAGGTTNATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTAGA--- 51
                                                                                  

consensus_3879#0      TCCCCGTTCCGAACGATAGCAATGAGCGGTAATGTAGGCTTGGCCATCACGCAAGTGTTC 120
consensus_3879#2      ------------------------------------------------------------
consensus_3879#1      -CCCCTTCAAGCAGCACAGCGATGA--GGCACTTTGGAATGCGCTACAATAC----GTGG 104
                                                                                  

consensus_3879#0      AATCTAATCTTCATGTGCCAGTGGGGCATGCGACAAACGGCCGAGTTGGAAAATCAAATG 180
consensus_3879#2      ------------------------------------------------------------
consensus_3879#1      AACTGAAGGAGGTCGTTTCAGCG----ATGGAAGGAA------AATTGGACGGTAAAATG 154
                                                                                  

consensus_3879#0      ACATCCG-TCGAGCGTGTCGTAGAGTACGCCGAGGTCGACCCAGAGCCATCACTGGTGTC 239
consensus_3879#2      ------------------------------------------------------------
consensus_3879#1      GCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTAGCGCGAGCT 214
                                                                                  

consensus_3879#0      AATCGGTAAACACAAACCACCAGCCGACTGGCCGACCAAGGGTGCCATA-CGATTCGAGC 298
consensus_3879#2      -------------------------------GAGGCCAAGAAT-CGGCA-CGAGGAAGAT 27
consensus_3879#1      ATTCTTCGAAACAATCCCATCCTGATTCTGGATGAAGCCACGTGCAACGTCGATCCTGAA 274
                                                       *        * *     ***       

consensus_3879#0      ATTTTTCGTTACGTTACTCGGCCCAATCAAATTCGGTTC-TGCGAGAC-CTCAATATGTC 356
consensus_3879#2      AGGCATCGTCGGAAGGACGGGCGCAGGAAATCGTCCATC-ATCCAGGC-CC---TGTTTC 82
consensus_3879#1      ACTGATAATCTCATTCAAAAAACCATTCGAGAGCAATTTGAACGATGTACTGTTTCTAAC 334
                      *    *  *              **    *       *    * *    *    * *  *

consensus_3879#0      AATAAACG-CGGGCGAAAAGATAGGCATCGTCGGAAGGACGGGCGCAGGGAAATCGTCCA 415
consensus_3879#2      GATTGGCGGTTAACGAAGGAATAATACGCATCGACGGCGTGGACATTGGCA---CACTCG 139
consensus_3879#1      AAT-AGCGCATCGCTTACACACTGTCATGGATAGT-GATCGGGTGTTGGTAA--TGGACG 390
                       **   **     *  *   *               *   **     ** *       * 

consensus_3879#0      TCATCCAGGCCCTGTTTCGATTGGCGGATTTCAATTA--TTCCACAA-GATCCGATTCTG 472
consensus_3879#2      GATTGCACGATCTGC----GCAAGCGGATTTCAATTA--TTCCACAA-GATCCGATTCTG 192
consensus_3879#1      CAGGTAAAGCCATCG---AGTTGGCGCATCCTTACGAACTGCTGCAACGAACGGACGGTG 447
                            * *   *          *** **    *  *  * *  *** ** * **   **

consensus_3879#0      TTTTCCGGAACGTTG-CGGGCGAATTTGGACCCCTTCA-AGCAGCACGGCGA-TGAGGCA 529
consensus_3879#2      TTTTCCGGAACGTTG-CGGGCGAATTTAGACCCCTTCA-AGCAGCACAGCGA-TGAGGCA 249
consensus_3879#1      CTCTGAAGCGGTTAGTCTGACGGAATGGCAGGAATCTACAGCGCAACAGTCACTGGTATA 507
                       * *   *    * * * * ** * *   *    *  * ***   ** *  * **    *

consensus_3879#0      CTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAA 589
consensus_3879#2      CTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAA 309
consensus_3879#1      GCTTATCAACGCTTACGGAACACG--ATTGACGCAA--CCGAGCAGCCACTCCAAATGGT 563
                        **   *     ***   **  *  * *** * *   *    **** *    *      

consensus_3879#0      CTGGACGGTAAAATGGCGGACGGT-GGTACCAA---CTTTAGCATGGGACAACGGCAACT 645
consensus_3879#2      TTGGACGGTAAAATGGCGGACGGT-GGTACCAA---CTTTAGCATGGGACAACGGCAACT 365
consensus_3879#1      TCCAACGGTGCGAAAATGGGTATTCGATGCCAAGCGCAANAATACAANAGGATGGCCGCA 623
                          *****   *    **    * * * ****   *   *  *    *  * ***  * 

consensus_3879#0      CGTGTGTTTGGCGCGAGCTATTCTTC--GCAACAATCCCCATCCTGATTCTGGATGAAGC 703
consensus_3879#2      CGTGTGTTTAGCGCGAGCTATTCTTC--GAAACAAGTCCCATCCTGATTCTGGATGAAGC 423
consensus_3879#1      TACATGTTCCATGCATGGTGCGATGAAGGGATCAACTGGGGTCCCTCCTCACCATG---- 679
                          ****    **  * *    *    * * ***      ***    **   ***    

consensus_3879#0      CACTGCCAACGT------------------------------------------------ 715
consensus_3879#2      CACTGGCAACGTCGGATCCTGAAACTGATAATCTACATTCACANACAACCATTCGAGAGC 483
consensus_3879#1      ------------------------------------------------------------
                                                                                  

consensus_3879#0      -------------------------------------
consensus_3879#2      AATTTGAACGATGTACTGTATTTAACAATAGCGCATC 520
consensus_3879#1      -------------------------------------