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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1021 fasta sequence
[GGCAGAATCGCCACGAGGGCGGTTCATTGCTGGTGCGCGCCGGCAGCACGTTCGAGACAAGAATCAACCCGACCGGGGCCAATCTGTACCGCTTTGTGCCGCAGTTTGGGACGAATTTTATCAGCTTCTAAGCGGCTGGAGACGCATTAGAAATGTATTACCCTAACTGTAGATCGTAAGACTGATAATGAAGGAAAGGGAGAGAGAGGATGTATGTGCCTGAAAGTAAGATGAGCGGCAAGAATCCATTGCAAAGAACGAAAGCGAAGCGTTGTTAGTGTAGCAACAGAAGCAGCACGCTAGAAGTGCTCTCCCATCCGGTTTCTTTGTTGTACACGCGGGATGTACAGACGGTAAGGTCTTCCAGCAAGTGTCAAGGTCAGTGTGCGCGCACTGTTGCATCGATGTATCCCATATGGACGAACGAAACGAAACGAAATGCTTCCCTTGGTTTACCACACGAAAACGATTCCCACGCAACGATACTGCGCCCGCGGACAGGGCACCACACTAACCGAACTGCTTACTTGCGTTTTCCTCCCTTTGTATTCTACGTTCTGCTGCCTCTCGCTCTGGCTGGGAGTGCTGGAAGCATTGGCTTGGTCCTTGGTNTCTAGTCATCATCTTCCACGGGGCTTGCAACCGTAACCCGGCAAAACGGTAGGTGTAGNGGTGGAAATTAGAACNTGGCATTANACGATTTGAAGGCCCATTCGGCGGCCAAGAACANCCGGGCTTAAACCANAGTTCAACGTAGTCACTTTGACCTACGGAGGCCAAAATTAGCGCTTGAACCGCGNACAAANCCCGGGGAGNTAAGGGGCCCGGNTTTCCAGGACGTTTTGGGCAAAAGCCCGTTTTTTTGCCCCCCCAAGAGAGGAGNTTTATCCGGAAAATTNAGGCGGGGGTTNCCCGGAAATTATGGGCGCATTANCCNCGGNATNGGCGCCAAGCAAACAATNNTGGACGGTTTAAAAGCAACCCAACTCGGTTTNGAAAACGTGGNAAGATTCCCNANATT]
[+] EMBL BX467404 [GGCAGAATCGCCACGAGGGCGGTTCATTGCTGGTGCGCGCCGGCAGCACGTTCGAGACAAGAATCAACCCGACCGGGGCCAATCTGTACCGCTTTGTGCCGCAGTTTGGGACGAATTTTATCAGCTTCTAAGCGGCTGGAGACGCATTAGAAATGTATTACCCTAACTGTAGATCGTAAGACTGATAATGAAGGAAAGGGAGAGAGAGGATGTATGTGCCTGAAAGTAAGATGAGCGGCAAGAATCCATTGCAAAGAACGAAAGCGAAGCGTTGTTAGTGTAGCAACAGAAGCAGCACGCTAGAAGTGCTCTCCCATCCGGTTTCTTTGTTGTACACGCGGGATGTACAGACGGTAAGGTCTTCCAGCAAGTGTCAAGGTCAGTGTGCGCGCACTGTTGCATCGATGTATCCCATATGGACGAACGAAACGAAACGAAATGCTTCCCTTGGTTTACCACACGAAAACGATTCCCACGCAACGATACTGCGCCCGCGGACAGGGCACCACACTAACCGAACTGCTTACTTGCGTTTTCCTCCCTTTGTATTCTACGTTCTGCTGCCTCTCGCTCTGGCTGGGAGTGCTGGAAGCATTGGCTTGGTCCTTGGTNTCTAGTCATCATCTTCCACGGGGCTTGCAACCGTAACCCGGCAAAACGGTAGGTGTAGNGGTGGAAATTAGAACNTGGCATTANACGATTTGAAGGCCCATTCGGCGGCCAAGAACANCCGGGCTTAAACCANAGTTCAACGTAGTCACTTTGACCTACGGAGGCCAAAATTAGCGCTTGAACCGCGNACAAANCCCGGGGAGNTAAGGGGCCCGGNTTTCCAGGACGTTTTGGGCAAAAGCCCGTTTTTTTGCCCCCCCAAGAGAGGAGNTTTATCCGGAAAATTNAGGCGGGGGTTNCCCGGAAATTATGGGCGCATTANCCNCGGNATNGGCGCCAAGCAAACAATNNTGGACGGTTTAAAAGCAACCCAACTCGGTTTNGAAAACGTGGNAAGATTCCCNANATT]
consensusID : consensus_388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[GGGTCACGAGCTGACGCAAGCGATCGCGTTCGTTTCACGCCGGGCCGACGGTGCACCGTACCCGCTGCGCGTGAAGCTGCAGGAAGACGTCGGCCTTAGCAACAGCACCAACATCAAGGGCTACAAAGTTTACGATCTGTTCGATGCAAAGGCGGTTCCATTGCTGGTGCGCGCCGGCAGCACGTTCGAGACAAGAATCAACCCGACCGGGGCCAATCTGTACCGCTTTGTGCCGCAGTTTGGGACGAATTTTATCAGCTTCTAAGCGGCTGGAGACGCATTAGAAATGTATTACCCTAACTGTAGATCGTAAGACTGATAATGAAGGAAAGGGAGAGAGAGGATGTATGTGCCTGAAAGTAAGATGAGCGGCAAGAATCCATTGCAAAGAACGAAAGCGAAGCGTTGTTAGTGTAGCAACAGAAGCAGCACGCTAGAAGTGCTCTCCCATCCGGTTTCTTTGTTGTACACGCGGGATGTACAGACGGTAAGGTCTTCCAGCAAGTGTCAAGGTCAGTGTGCGCGCACTGTTGCATCGATGTATCCCATATGGACGAACGAAACGAAACGAAATGCTTCCCTTGGT]
[+] EMBL BX626774 [GGGTCACGAGCTGACGCAAGCGATCGCGTTCGTTTCACGCCGGGCCGACGGTGCACCGTACCCGCTGCGCGTGAAGCTGCAGGAAGACGTCGGCCTTAGCAACAGCACCAACATCAAGGGCTACAAAGTTTACGATCTGTTCGATGCAAAGGCGGTTCCATTGCTGGTGCGCGCCGGCAGCACGTTCGAGACAAGAATCAACCCGACCGGGGCCAATCTGTACCGCTTTGTGCCGCAGTTTGGGACGAATTTTATCAGCTTCTAAGCGGCTGGAGACGCATTAGAAATGTATTACCCTAACTGTAGATCGTAAGACTGATAATGAAGGAAAGGGAGAGAGAGGATGTATGTGCCTGAAAGTAAGATGAGCGGCAAGAATCCATTGCAAAGAACGAAAGCGAAGCGTTGTTAGTGTAGCAACAGAAGCAGCACGCTAGAAGTGCTCTCCCATCCGGTTTCTTTGTTGTACACGCGGGATGTACAGACGGTAAGGTCTTCCAGCAAGTGTCAAGGTCAGTGTGCGCGCACTGTTGCATCGATGTATCCCATATGGACGAACGAAACGAAACGAAATGCTTCCCTTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_388#0 ------------------------------------------------------------
consensus_388#1 GGGTCACGAGCTGACGCAAGCGATCGCGTTCGTTTCACGCCGGGCCGACGGTGCACCGTA 60
consensus_388#0 ------------------------------------------------------------
consensus_388#1 CCCGCTGCGCGTGAAGCTGCAGGAAGACGTCGGCCTTAGCAACAGCACCAACATCAAGGG 120
consensus_388#0 -------------GGCAGAATCGCCACGAGGGCGGTTC-ATTGCTGGTGCGCGCCGGCAG 46
consensus_388#1 CTACAAAGTTTACGATCTGTTCGATGCAAAGGCGGTTCCATTGCTGGTGCGCGCCGGCAG 180
* *** * * ******** *********************
consensus_388#0 CACGTTCGAGACAAGAATCAACCCGACCGGGGCCAATCTGTACCGCTTTGTGCCGCAGTT 106
consensus_388#1 CACGTTCGAGACAAGAATCAACCCGACCGGGGCCAATCTGTACCGCTTTGTGCCGCAGTT 240
************************************************************
consensus_388#0 TGGGACGAATTTTATCAGCTTCTAAGCGGCTGGAGACGCATTAGAAATGTATTACCCTAA 166
consensus_388#1 TGGGACGAATTTTATCAGCTTCTAAGCGGCTGGAGACGCATTAGAAATGTATTACCCTAA 300
************************************************************
consensus_388#0 CTGTAGATCGTAAGACTGATAATGAAGGAAAGGGAGAGAGAGGATGTATGTGCCTGAAAG 226
consensus_388#1 CTGTAGATCGTAAGACTGATAATGAAGGAAAGGGAGAGAGAGGATGTATGTGCCTGAAAG 360
************************************************************
consensus_388#0 TAAGATGAGCGGCAAGAATCCATTGCAAAGAACGAAAGCGAAGCGTTGTTAGTGTAGCAA 286
consensus_388#1 TAAGATGAGCGGCAAGAATCCATTGCAAAGAACGAAAGCGAAGCGTTGTTAGTGTAGCAA 420
************************************************************
consensus_388#0 CAGAAGCAGCACGCTAGAAGTGCTCTCCCATCCGGTTTCTTTGTTGTACACGCGGGATGT 346
consensus_388#1 CAGAAGCAGCACGCTAGAAGTGCTCTCCCATCCGGTTTCTTTGTTGTACACGCGGGATGT 480
************************************************************
consensus_388#0 ACAGACGGTAAGGTCTTCCAGCAAGTGTCAAGGTCAGTGTGCGCGCACTGTTGCATCGAT 406
consensus_388#1 ACAGACGGTAAGGTCTTCCAGCAAGTGTCAAGGTCAGTGTGCGCGCACTGTTGCATCGAT 540
************************************************************
consensus_388#0 GTATCCCATATGGACGAACGAAACGAAACGAAATGCTTCCCTTGGTTTACCACACGAAAA 466
consensus_388#1 GTATCCCATATGGACGAACGAAACGAAACGAAATGCTTCCCTTGGT-------------- 586
**********************************************
consensus_388#0 CGATTCCCACGCAACGATACTGCGCCCGCGGACAGGGCACCACACTAACCGAACTGCTTA 526
consensus_388#1 ------------------------------------------------------------
consensus_388#0 CTTGCGTTTTCCTCCCTTTGTATTCTACGTTCTGCTGCCTCTCGCTCTGGCTGGGAGTGC 586
consensus_388#1 ------------------------------------------------------------
consensus_388#0 TGGAAGCATTGGCTTGGTCCTTGGTNTCTAGTCATCATCTTCCACGGGGCTTGCAACCGT 646
consensus_388#1 ------------------------------------------------------------
consensus_388#0 AACCCGGCAAAACGGTAGGTGTAGNGGTGGAAATTAGAACNTGGCATTANACGATTTGAA 706
consensus_388#1 ------------------------------------------------------------
consensus_388#0 GGCCCATTCGGCGGCCAAGAACANCCGGGCTTAAACCANAGTTCAACGTAGTCACTTTGA 766
consensus_388#1 ------------------------------------------------------------
consensus_388#0 CCTACGGAGGCCAAAATTAGCGCTTGAACCGCGNACAAANCCCGGGGAGNTAAGGGGCCC 826
consensus_388#1 ------------------------------------------------------------
consensus_388#0 GGNTTTCCAGGACGTTTTGGGCAAAAGCCCGTTTTTTTGCCCCCCCAAGAGAGGAGNTTT 886
consensus_388#1 ------------------------------------------------------------
consensus_388#0 ATCCGGAAAATTNAGGCGGGGGTTNCCCGGAAATTATGGGCGCATTANCCNCGGNATNGG 946
consensus_388#1 ------------------------------------------------------------
consensus_388#0 CGCCAAGCAAACAATNNTGGACGGTTTAAAAGCAACCCAACTCGGTTTNGAAAACGTGGN 1006
consensus_388#1 ------------------------------------------------------------
consensus_388#0 AAGATTCCCNANATT 1021
consensus_388#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||