cluster # 3880

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Anopheles gambiae
cluster # 3880 cluster # 3880 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3880#0 length = 798 sequences # 2

consensus_3880#1 length = 492 sequences # 1

consensusID : consensus_3880#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 798
fasta sequence

                              [CCGGTTTCAGAAATCGGGCATCAATAACGGCCTCCAGGTGCCAAAGGTGGATCTAAGCGGTGCCGGGTTTTCCTTTCTCCTCGATAAGCTGGTCAATGCCATTGCGCCGACGGCCGGCTACGAACCGATCGAGGTGATGATCTGTGTCACCGGCTCCCGGCCACAGCCAAAGGAGGTCGCCCAGACCTTGCGCCCGCTCTGGTCGAACAGCATCAAAACGTGCGTGGTGGAAACGAGCGCCGGAGCGGTAGACGATCTCGGCAAGGAGGCCGGTGCCACCGTTGTCGTGCTGCTGGGCGACGGTGGAGAGATGCGGGTGCGCTCGTGGAACCATGACCGCTTTCAGGAACTTCACGTCACCCGTCCCGAGCTGATGCCGTACATACTGCGCACGCTGCGCCGGTCCGATGTGTCGACGGGCGAACTTTCCCAGGCGCTACAAAGCACTTCGCTCGGTGGGGCCTCCACGTCTGCCTCCTTTTCCTACTCGTCGTCCTTTACTGCCATTTCGTCCGCGGCATCCACGAGGCTCAGCTCGGCCTCGTCGAGTGCTGCTTGCCAGCAGCAATCTATCAATACCTCCCCACCGCTCGATCTTGTGTTTCTCACGAGCGAGAAGATAAACACCAGTAAAAAGCGCCGCTACGAGCATCAGGTTGAGCATAAGATGTCGCCCGTCCTGTCCAAATTCCATCGCAAGGAAAAGGTCACCCTCATTATGGTGGACGTACCGAGCGCACCGCTCCGTGGACTGGTTGGGCTGATTGATCCGCTCGAGTGTGGATCGCAGGAGGATGA]

[+] EMBL BM614017             [CCGGTTTCAGAAATCGGGCATCAATAACGGCCTCCAGGTGCCAAAGGTGGATCTAAGCGGTGCCGGGTTTTCCTTTCTCCTCGATAAGCTGGTCAATGCCATTGCGCCGACGGCCGGCTACGAACCGATCGAGGTGATGATCTGTGTCACCGGCTCCCGGCCACAGCCAAAGGAGGTCGCCCAGACCTTGCGCCCGCTCTGGTCGAACAGCATCAAAACGTGCGTGGTGGAAACGAGCGCCGGAGCGGTAGACGATCTCGGCAAGGAGGCCGGTGCCACCGTTGTCGTGCTGCTGGGCGACGGTGGAGAGATGCGGGTGCGCTCGTGGAACCATGACCGCTTTCAGGAACTTCACGTCACCCGTCCCGAGCTGATGCCGTACATACTGCGCACGCTGCGCCGGTCCGATGTGTCGACGGGCGAACTTTCCCAGGCGCTACAAAGCACTTCGCTCGGTGGGGCCTCCACGTCTGCCTCCTTTTCCTACTCGTCGTCCTTTACTGCCATTTCGTCCGCGGCATCCACGAGGCTCAGCTCGGCCTCGTCGAGTGCTGCTTGCCAGCAGCAATCTATCAATACCTCCCCACCGCTCGATCTTGTGTTTCTCACGAGCGAGAAGATAAACACCAGTAAAAAGCGCCGCTACGAGCATCAGGTTGAGCATAAGATGTCGCCCGTCCTGTCCAAATTCCATCGCAAGGAAAAGGTCACCCTCATTAT                                                                              ]
[+] EMBL BX620968             [                                                                                                                                                                                                                                                                                      CCGTTGTCGTGCTGCTGGGCGACGGTGGAGAGATGCGGGTGCGCTCGTGGAACCATGACCGCTTTCAGGAACTTCACGTCACCCGTCCCGAGCTGATGCCGTACATACTGCGCACGCTGCGCCGGTCCGATGTGTCGACGGGCGAACTTTCCCAGGCGCTACAAAGCACTTCGCTCGGTGGGGCCTCCACGTCTGCCTCCTTTTCCTACTCGTCGTCCTTTACTGCCATTTCGTCCGCGGCATCCACGAGGCTCAGCTCGGCCTCGTCGAGTGCTGCGAGCCAGCAGCAATCTATCAATACCTCCCCACCGCTCGATCTTGTGTTTCTCACGAGCGAGAAGATAAACACCAGTAAAAAGCGCCGCTACGAGCATCAGGTTGAGCATAAGATGTCGCCCGTCCTGTCCAAATTCCATCGCAAGGAAAAGGTCACCCTCATTATGGTGGACGTACCGAGCGCACCGCTCCGTGGACTGGTTGGGCTGATTGATCCGCTCGAGTGTGGATCGCAGGAGGATGA]




>consensus_3880#0
CCGGTTTCAGAAATCGGGCATCAATAACGGCCTCCAGGTGCCAAAGGTGGATCTAAGCGG
TGCCGGGTTTTCCTTTCTCCTCGATAAGCTGGTCAATGCCATTGCGCCGACGGCCGGCTA
CGAACCGATCGAGGTGATGATCTGTGTCACCGGCTCCCGGCCACAGCCAAAGGAGGTCGC
CCAGACCTTGCGCCCGCTCTGGTCGAACAGCATCAAAACGTGCGTGGTGGAAACGAGCGC
CGGAGCGGTAGACGATCTCGGCAAGGAGGCCGGTGCCACCGTTGTCGTGCTGCTGGGCGA
CGGTGGAGAGATGCGGGTGCGCTCGTGGAACCATGACCGCTTTCAGGAACTTCACGTCAC
CCGTCCCGAGCTGATGCCGTACATACTGCGCACGCTGCGCCGGTCCGATGTGTCGACGGG
CGAACTTTCCCAGGCGCTACAAAGCACTTCGCTCGGTGGGGCCTCCACGTCTGCCTCCTT
TTCCTACTCGTCGTCCTTTACTGCCATTTCGTCCGCGGCATCCACGAGGCTCAGCTCGGC
CTCGTCGAGTGCTGCTTGCCAGCAGCAATCTATCAATACCTCCCCACCGCTCGATCTTGT
GTTTCTCACGAGCGAGAAGATAAACACCAGTAAAAAGCGCCGCTACGAGCATCAGGTTGA
GCATAAGATGTCGCCCGTCCTGTCCAAATTCCATCGCAAGGAAAAGGTCACCCTCATTAT
GGTGGACGTACCGAGCGCACCGCTCCGTGGACTGGTTGGGCTGATTGATCCGCTCGAGTG
TGGATCGCAGGAGGATGA

consensusID : consensus_3880#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [CCGCGGACGCGTGGGCGGGCATCAATAACGGCCTCCAGGTGCCAAAGGTGGATCTAAGCGGTGCCGGGTTTTCCTTTCTGCTCGATAAGCTGGTCAATGCCATTGCGCCGACGGCCGGCTACGAACCGATCGAGGTGATGATCTGTGTCACCGGCTCCCGGCCACAGCCAAAGGAGGTCGCCCAGACCTTGCGCCCGCTGTGGTCGAACAGCATCAAAACGTGCGTGATGGAAACGAGCGCCGGAGCGGTAGACGATCTCGGCAAGGAGGCCGGTGCTACCGTTGTCGTGCTGCTGGGCGACGGTGGAGAGATGCGGGTGCGCTCGTGGAACCATGACCGCTTTCAGGAACTTCACGTAACCCGCCCCGAGCTGATGCCATACATACTGCGCACGCTGCGCCGGTCCGATGTGTCGACGGGCGAACTTTCCCAGGCGCTACAAAGCACTTCGCTCGGTGGGGCCTCCACATCTGCCTCCTTTTCCTACTCGT]

[+] EMBL BM601602             [CCGCGGACGCGTGGGCGGGCATCAATAACGGCCTCCAGGTGCCAAAGGTGGATCTAAGCGGTGCCGGGTTTTCCTTTCTGCTCGATAAGCTGGTCAATGCCATTGCGCCGACGGCCGGCTACGAACCGATCGAGGTGATGATCTGTGTCACCGGCTCCCGGCCACAGCCAAAGGAGGTCGCCCAGACCTTGCGCCCGCTGTGGTCGAACAGCATCAAAACGTGCGTGATGGAAACGAGCGCCGGAGCGGTAGACGATCTCGGCAAGGAGGCCGGTGCTACCGTTGTCGTGCTGCTGGGCGACGGTGGAGAGATGCGGGTGCGCTCGTGGAACCATGACCGCTTTCAGGAACTTCACGTAACCCGCCCCGAGCTGATGCCATACATACTGCGCACGCTGCGCCGGTCCGATGTGTCGACGGGCGAACTTTCCCAGGCGCTACAAAGCACTTCGCTCGGTGGGGCCTCCACATCTGCCTCCTTTTCCTACTCGT]




>consensus_3880#1
CCGCGGACGCGTGGGCGGGCATCAATAACGGCCTCCAGGTGCCAAAGGTGGATCTAAGCG
GTGCCGGGTTTTCCTTTCTGCTCGATAAGCTGGTCAATGCCATTGCGCCGACGGCCGGCT
ACGAACCGATCGAGGTGATGATCTGTGTCACCGGCTCCCGGCCACAGCCAAAGGAGGTCG
CCCAGACCTTGCGCCCGCTGTGGTCGAACAGCATCAAAACGTGCGTGATGGAAACGAGCG
CCGGAGCGGTAGACGATCTCGGCAAGGAGGCCGGTGCTACCGTTGTCGTGCTGCTGGGCG
ACGGTGGAGAGATGCGGGTGCGCTCGTGGAACCATGACCGCTTTCAGGAACTTCACGTAA
CCCGCCCCGAGCTGATGCCATACATACTGCGCACGCTGCGCCGGTCCGATGTGTCGACGG
GCGAACTTTCCCAGGCGCTACAAAGCACTTCGCTCGGTGGGGCCTCCACATCTGCCTCCT
TTTCCTACTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3880#0      CCGGTTTCA-GAAATCGGGCATCAATAACGGCCTCCAGGTGCCAAAGGTGGATCTAAGCG 59
consensus_3880#1      CCGCGGACGCGTGGGCGGGCATCAATAACGGCCTCCAGGTGCCAAAGGTGGATCTAAGCG 60
                      ***    *  *    *********************************************

consensus_3880#0      GTGCCGGGTTTTCCTTTCTCCTCGATAAGCTGGTCAATGCCATTGCGCCGACGGCCGGCT 119
consensus_3880#1      GTGCCGGGTTTTCCTTTCTGCTCGATAAGCTGGTCAATGCCATTGCGCCGACGGCCGGCT 120
                      ******************* ****************************************

consensus_3880#0      ACGAACCGATCGAGGTGATGATCTGTGTCACCGGCTCCCGGCCACAGCCAAAGGAGGTCG 179
consensus_3880#1      ACGAACCGATCGAGGTGATGATCTGTGTCACCGGCTCCCGGCCACAGCCAAAGGAGGTCG 180
                      ************************************************************

consensus_3880#0      CCCAGACCTTGCGCCCGCTCTGGTCGAACAGCATCAAAACGTGCGTGGTGGAAACGAGCG 239
consensus_3880#1      CCCAGACCTTGCGCCCGCTGTGGTCGAACAGCATCAAAACGTGCGTGATGGAAACGAGCG 240
                      ******************* *************************** ************

consensus_3880#0      CCGGAGCGGTAGACGATCTCGGCAAGGAGGCCGGTGCCACCGTTGTCGTGCTGCTGGGCG 299
consensus_3880#1      CCGGAGCGGTAGACGATCTCGGCAAGGAGGCCGGTGCTACCGTTGTCGTGCTGCTGGGCG 300
                      ************************************* **********************

consensus_3880#0      ACGGTGGAGAGATGCGGGTGCGCTCGTGGAACCATGACCGCTTTCAGGAACTTCACGTCA 359
consensus_3880#1      ACGGTGGAGAGATGCGGGTGCGCTCGTGGAACCATGACCGCTTTCAGGAACTTCACGTAA 360
                      ********************************************************** *

consensus_3880#0      CCCGTCCCGAGCTGATGCCGTACATACTGCGCACGCTGCGCCGGTCCGATGTGTCGACGG 419
consensus_3880#1      CCCGCCCCGAGCTGATGCCATACATACTGCGCACGCTGCGCCGGTCCGATGTGTCGACGG 420
                      **** ************** ****************************************

consensus_3880#0      GCGAACTTTCCCAGGCGCTACAAAGCACTTCGCTCGGTGGGGCCTCCACGTCTGCCTCCT 479
consensus_3880#1      GCGAACTTTCCCAGGCGCTACAAAGCACTTCGCTCGGTGGGGCCTCCACATCTGCCTCCT 480
                      ************************************************* **********

consensus_3880#0      TTTCCTACTCGTCGTCCTTTACTGCCATTTCGTCCGCGGCATCCACGAGGCTCAGCTCGG 539
consensus_3880#1      TTTCCTACTCGT------------------------------------------------ 492
                      ************                                                

consensus_3880#0      CCTCGTCGAGTGCTGCTTGCCAGCAGCAATCTATCAATACCTCCCCACCGCTCGATCTTG 599
consensus_3880#1      ------------------------------------------------------------
                                                                                  

consensus_3880#0      TGTTTCTCACGAGCGAGAAGATAAACACCAGTAAAAAGCGCCGCTACGAGCATCAGGTTG 659
consensus_3880#1      ------------------------------------------------------------
                                                                                  

consensus_3880#0      AGCATAAGATGTCGCCCGTCCTGTCCAAATTCCATCGCAAGGAAAAGGTCACCCTCATTA 719
consensus_3880#1      ------------------------------------------------------------
                                                                                  

consensus_3880#0      TGGTGGACGTACCGAGCGCACCGCTCCGTGGACTGGTTGGGCTGATTGATCCGCTCGAGT 779
consensus_3880#1      ------------------------------------------------------------
                                                                                  

consensus_3880#0      GTGGATCGCAGGAGGATGA 798
consensus_3880#1      -------------------