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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1077 fasta sequence
[CCGCCCACGCGTCCGGAGTTATGTAGCGAGAGCGTAAGCGAAATGCCCGCAGAAAATCGCAAAAAAAAGAATGGAATCGAAGGAAACAAACGCGATGAAATGTGATAATTAACGTTTAAGTGAAAACAAAAAAATCATATATAGATATGGTGTAAAGTAGATAAAAGATTGAAAGGCTTGCCTCTAATGTTTGCTTTAGGAATGGTTTTAAGGATTGTAAAGAGAAAAAAAACATAGATAGGACCAGACATAGTTGAAGAAAAAAGTCATGCGAAGAATTAAAATAGAGAAATCATGGAACTAACCAACAATGCTATATTCGGCACTCGTTTACTCGTTATATCGAAAGTTCGTTAAATTATTATGTAGAGTTCAAGAAATGACGTTTGCAACCAAACAAAGCAGTAAGACAACACGATACGATTTCGCATTCCGCGGACGATACGAGTGGAGCAGGGACACAGAAAGGGAGGGGGGAGAGGGTGAGAGAGAGAGAAAGTAGAAAAACACGATCCTTGAAGGAGGAATTAAGACTTGAGCCGGAGGAAGGAAGCGGGAGGAAAACCTGTACATTCTCCAGCCGGACTACAATGAAGAATGCTTATACTTTACTTTACGATATCCGCGTTCGTTCGATGAATTGATGAAGATTATTTTTTAGAGTAGTTAGCCTAGTTAGTTAATTACTTTACACCGATCATCAGAGATACGACGAAGGTGGAGGCGGGGTACGACGGTCACGGTAGTTTGGTATCCAGTATCACAGGAGAGCGGGAGCACTGGGAGTCCCCAGTCATCCAAAAGCGCCGTGGTTATAGAATCGAACGCCTAGAGAGGAGAGTTACTGCTGTTTTTACTACTAGAACATGTTGATTTGTTCCTTACTATCTCGCTTGTGTAACGTTTGTATGTATATATCGGTTAAACTAGAAACGAAACGAATGGGGGAGGTAAACGGTGATTGGCGAGCGGAAGGTGCGCAAATACGCTAGATAATCGAGCAAGAGCACAGTTGCGCAAAGACACGTGAGCATGCCCTTACATCAATACACAGCTAACTATCAAGCAACTATGAAT]
[+] EMBL BM617779 [CCGCCCACGCGTCCGGAGTTATGTAGCGAGAGCGTAAGCGAAATGCCCGCAGAAAATCGCAAAAAAAAGAATGGAATCGAAGGAAACAAACGCGATGAAATGTGATAATTAACGTTTAAGTGAAAACAAAAAAATCATATATAGATATGGTGTAAAGTAGATAAAAGATTGAAAGGCTTGCCTCTAATGTTTGCTTTAGGAATGGTTTTAAGGATTGTAAAGAGAAAAAAAACATAGATAGGACCAGACATAGTTGAAGAAAAAAGTCATGCGAAGAATTAAAATAGAGAAATCATGGAACTAACCAACAATGCTATATTCGGCACTCGTTTACTCGTTATATCGAAAGTTCGTTAAATTATTATGTAGAGTTCAAGAAATGACGTTTGCAACCAAACAAAGCAGTAAGACAACACGATACGATTTCGCATTCCGCGGACGATACGAGTGGAGCAGGGACACAGAAAGGGAGGGGGGAGAGGGTGAGAGAGAGAGAAAGTAGAAAAACACGATCCTTGAAGGAGGAATTAAGACTTGAGCCGGAGGAAGGAAGCGGGAGGAAAACCTGTACATTCTCCAGCCGGACTACAATGAAGAATGCTTATACTTTACTTTACGATATCCGCGTTCGTTCGATGAATTGATGAAGATTATTTTTTAGAGTAGTTAGCCTAGTTAGTTAATTACTTTACACCGATCATCAGAGATACGACGAAGGTGGAGGCGGGGTACGACGGTCACGGTAGTTTGGTATCCAGTATCACAGGAGAGCGGGAGCACTGGGAGTCCCCAGTCATCCAAAAGCGC ]
[+] EMBL BX620697 [ ACGATACGATTTCGCATTCCGCGGACGATACGAGTGGAGAAGGGACACAGAAAGGGAAGGGTGAG G GAGAGAGAGAATGTAGAAAAACACGATCCTTGAAGGAGGAATTAAGACTTGAGCCGGAGGAAGGAAGCGGGAGGAAAACCTGTACATTCTCCAGCCGGACTACACTGAAGAATGCTTATACCTTACTTTACGATATCCGCGTTCGTTCGATGAATTGATGAAGATTATTTTTTAGAGTAGTTAGCCTAGTTAGTTAATTACTTTACACCGATCATCAGAGATACGAAGAAGGTGAAGGC GGGTACTAAGGTCACGGTAGTTTGTTATCAAGTGTCACAGGAGAAC GGAGCACT GGAGTTCCCAGTCCCCCAGAAGCGCCGTGGTTATAGAATCGAACGCCTAGAGAGGAGAGTTACTGCTGTTTTTACTACTAGAACATGTTGATTTGTTCCTTACTATCTCGCTTGTGTAACGTTTGTATGTATATATCGGTTAAACTAGAAACGAAACGAATGGGGGAGGTAAACGGTGATTGGCGAGCGGAAGGTGCGCAAATACGCTAGATAATCGAGCAAGAGCACAGTTGCGCAAAGACACGTGAGCATGCCCTTACATCAATACACAGCTAACTATCAAGCAACTATGAAT]
consensusID : consensus_3883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 846 fasta sequence
[GCAGAATTGCCCGNGGTTAATGACGTTTGCACCAAACANAGCAGTATGACAACATGATACGATTTCGCATTCCTGCGGACGATACGAGTGGAGAAGGGACACAGAACAGGGAAGTGGTGAGTGGAGAGAGAGAATGTAGAAAAACACGATCCTTGAAGTGAGTGAATTAAGACTTGAGCCTGGAGTGAANGGAAGCGGGAGGAAAACCTGTACATTCTCCAGCCTGGACTACACTGAAGAATGCTTATACCTTACTTTACGATATCCGCGTTCGTTCGATGANATTGATGAAGATTATTTTAGAGTAGTTAGCCTAGTTAGCTTAATTACTATTACACCGAATCATCACCAGATACGACAGAACGCGTGAAGGCGGGTACTAAGGTCACGGCTAGCTNCGNTACTCAACGTGTCACAGGAGAACGGAGCACTTGGCAGTATCCCAGTCCCCCAGGAACNGCGCCCGCTGCGTATAATACGAACTCGGACACGCCTAAAAGCACGGGANGANGTATCACTTGCTGTTTTTCTAACTACCTACGAANCCATGTNGCNCTCTCGTCTCCTCTAAACCTAAATCCCTCCGCCCCTCTGCTGCTACACCCGCNCATGGTACCTTGGTTATTTANTTCACTCCCGGGTATCAAAACCCCNTAAACGCAACAGNTCCGCACANCCCGGAAACATTGCGCTGCTGCACCCGCTACACAACACCCCGGCGNCGCANTCTNCGGCGACCCGCACGCCCNGCNCANCCCCCTCGTTCGCCCNCCCCANACACTTAACCCGCCCCCACAACNCACTCACACATCCGCCNCCGCCCCCACGCACGCCCCCCCCCTCTTC]
[+] EMBL AL695433 [GCAGAATTGCCCGNGGTTAATGACGTTTGCACCAAACANAGCAGTATGACAACATGATACGATTTCGCATTCCTGCGGACGATACGAGTGGAGAAGGGACACAGAACAGGGAAGTGGTGAGTGGAGAGAGAGAATGTAGAAAAACACGATCCTTGAAGTGAGTGAATTAAGACTTGAGCCTGGAGTGAANGGAAGCGGGAGGAAAACCTGTACATTCTCCAGCCTGGACTACACTGAAGAATGCTTATACCTTACTTTACGATATCCGCGTTCGTTCGATGANATTGATGAAGATTATTTTAGAGTAGTTAGCCTAGTTAGCTTAATTACTATTACACCGAATCATCACCAGATACGACAGAACGCGTGAAGGCGGGTACTAAGGTCACGGCTAGCTNCGNTACTCAACGTGTCACAGGAGAACGGAGCACTTGGCAGTATCCCAGTCCCCCAGGAACNGCGCCCGCTGCGTATAATACGAACTCGGACACGCCTAAAAGCACGGGANGANGTATCACTTGCTGTTTTTCTAACTACCTACGAANCCATGTNGCNCTCTCGTCTCCTCTAAACCTAAATCCCTCCGCCCCTCTGCTGCTACACCCGCNCATGGTACCTTGGTTATTTANTTCACTCCCGGGTATCAAAACCCCNTAAACGCAACAGNTCCGCACANCCCGGAAACATTGCGCTGCTGCACCCGCTACACAACACCCCGGCGNCGCANTCTNCGGCGACCCGCACGCCCNGCNCANCCCCCTCGTTCGCCCNCCCCANACACTTAACCCGCCCCCACAACNCACTCACACATCCGCCNCCGCCCCCACGCACGCCCCCCCCCTCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3883#0 CCGCCCACGCGTCCGGAGTTATGTAGCGAGAGCGTAAGCGAAATGCCCGCAGAAAATCGC 60
consensus_3883#1 ------------------------------------------------------------
consensus_3883#0 AAAAAAAAGAATGGAATCGAAGGAAACAAACGCGATGAAATGTGATAATTAACGTTTAAG 120
consensus_3883#1 ------------------------------------------------------------
consensus_3883#0 TGAAAACAAAAAAATCATATATAGATATGGTGTAAAGTAGATAAAAGATTGAAAGGCTTG 180
consensus_3883#1 ------------------------------------------------------------
consensus_3883#0 CCTCTAATGTTTGCTTTAGGAATGGTTTTAAGGATTGTAAAGAGAAAAAAAACATAGATA 240
consensus_3883#1 ------------------------------------------------------------
consensus_3883#0 GGACCAGACATAGTTGAAGAAAAAAGTCATGCGAAGAATTAAAATAGAGAAATCATGGAA 300
consensus_3883#1 ------------------------------------------------------------
consensus_3883#0 CTAACCAACAATGCTATATTCGGCACTCGTTTACTCGTTATATCGAAAGTTCGTTAAATT 360
consensus_3883#1 -------------------------------------------------------GCAGA 5
*
consensus_3883#0 ATTATGTAGAGTTCAAGAAATGACGTTTGCAACCAAACAAAGCAGTAAGACAACACGATA 420
consensus_3883#1 ATTGCCCGNGGTT-----AATGACGTTTGCA-CCAAACANAGCAGTATGACAACATGATA 59
*** *** ************* ******* ******* ******* ****
consensus_3883#0 CGATTTCGCATTCC-GCGGACGATACGAGTGGAGCAGGGACACAGAAAGGGAGGGGGGAG 479
consensus_3883#1 CGATTTCGCATTCCTGCGGACGATACGAGTGGAGAAGGGACACAGAACAGGGAAGTGGTG 119
************** ******************* ************ ** * ** *
consensus_3883#0 AGGGTGAGAGAGAGAGAAAGTAGAAAAACACGATCCTTGAAG-GAG-GAATTAAGACTTG 537
consensus_3883#1 AGTG---GAGAGAGAGAATGTAGAAAAACACGATCCTTGAAGTGAGTGAATTAAGACTTG 176
** * *********** *********************** *** *************
consensus_3883#0 AGCCGGAGG---AAGGAAGCGGGAGGAAAACCTGTACATTCTCCAGCC-GGACTACAATG 593
consensus_3883#1 AGCCTGGAGTGAANGGAAGCGGGAGGAAAACCTGTACATTCTCCAGCCTGGACTACACTG 236
**** * * * ********************************** ******** **
consensus_3883#0 AAGAATGCTTATACTTTACTTTACGATATCCGCGTTCGTTCGATGAA-TTGATGAAGATT 652
consensus_3883#1 AAGAATGCTTATACCTTACTTTACGATATCCGCGTTCGTTCGATGANATTGATGAAGATT 296
************** ******************************* ************
consensus_3883#0 ATTTTTTAGAGTAGTTAGCCTAGTTAG-TTAATTACT-TTACACCGA-TCATCAG-AGAT 708
consensus_3883#1 ATTTT--AGAGTAGTTAGCCTAGTTAGCTTAATTACTATTACACCGAATCATCACCAGAT 354
***** ******************** ********* ********* ****** ****
consensus_3883#0 ACGACGAAG---GTGGAGGCGGGGTACGACGGTCACGG-TAGTTT-GGTATCCA--GTAT 761
consensus_3883#1 ACGACAGAACGCGTGAAGGCGGG-TACTAAGGTCACGGCTAGCTNCGNTACTCAACGTGT 413
***** * *** ******* *** * ******** *** * * ** ** ** *
consensus_3883#0 CACAGGAGAGCGGGAGCACTGGGAGT-CCCCAGTCATCCAAAAGCGCCG-----TGGTTA 815
consensus_3883#1 CACAGGAGAACGGAGCACTTGGCAGTATCCCAGTCCCCCAGGAACNGCGCCCGCTGCGTA 473
********* *** *** *** ******* *** * * ** ** **
consensus_3883#0 TAGAATCGA-------ACGCCTAGA-----GAGGAGAGTTAC----TGCTGTTTTTACTA 859
consensus_3883#1 TAATACGAACTCGGACACGCCTAAAAGCACGGGANGANGTATCACTTGCTGTTTTTCTAA 533
** * * ******* * * * ** ** ********** *
consensus_3883#0 CTAGA-ACATGTTGATTTGTTCCTTACTATCTCGCTTGTGTAACGTTTGTATGTATATAT 918
consensus_3883#1 CTACCTACGAANCCATGTNGCNCTCTCGTCTCCTCTAAACCTAAATCCCTCCGCCCCTCT 593
*** ** ** * ** * * ** * * * * * *
consensus_3883#0 -CGGTTAAACTAGAAACGAAACGAATGGGGGAGGTAAACGGTGATTGGCGAGCGGAAGGT 977
consensus_3883#1 GCTGCTACACCCGCN-CATGGTACCTTGGTTATTTANTTCACTCCCGGGTATCAAAACCC 652
* * ** ** * * * ** * ** ** * * **
consensus_3883#0 GCGCAAATACGCTAGATAATCGAGCAAGAGCACAGTTGCGCAAAGACACGTG------AG 1031
consensus_3883#1 -CNTAAACGCAACAGNTCCGCACANCCCGGAAACATTGCGCTGCTGCACCCGCTACACAA 711
* *** * ** * * * * ****** *** * *
consensus_3883#0 CATGCCCTTACATCAATACACAGCTAACTATCAAGCAACTATGAAT-------------- 1077
consensus_3883#1 CACCCCGGCGNCGCANTCTNCGGCGACCCGCACGCCCNGCNCANCCCCCTCGTTCGCCCN 771
** ** ** * * ** * * *
consensus_3883#0 ------------------------------------------------------------
consensus_3883#1 CCCCANACACTTAACCCGCCCCCACAACNCACTCACACATCCGCCNCCGCCCCCACGCAC 831
consensus_3883#0 ---------------
consensus_3883#1 GCCCCCCCCCTCTTC 846
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||