These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 888 fasta sequence [CCGGCAAATAAAGCGACCCCGTCTGGTGTGCAATGGCCTCGTCAGATCCGCTGAACGAGTAACTTTCTCAATTTTGTTATCAACGCGAAACGAGAAGAAAGTGCTGCGACCGTTTTGCTACACGCAAAATATAATACCGCCCTGCGCCACCTCTACACACCTTTTCCTGGTCGTCCGTTTGTGTCGTCGTCCCCGGGTGTGGTGTGAGAAAGGATCGGAAAATCGGATTTTCATCTGTGTTGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAAGCAGTGGAGTGGTATTTGCACCAAGTCTAATCGGTGAGAGTAGGTGCGTGTGTGTGCATCGGTCGTCGTGTGGCTAGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAATCGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGATTCCGACCTAAGCGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTCGGTCACAGGGCTGACCGTGGCATACAGCAGGAAGTGACCGATGTGTGTCTGTGGCGCTCTGTGTGCCTGTGCACGCGCGTCCGTGTGCGTTCATGTAATTAAAGTTCACCCCTGCAGTCGTCGGGGCGGTTCGTAAAACTTGCTGCAGCGCACCGTGCCCCGTAGCCAGCAGCAGTCGATCGAAATTGTAGTGCGAAAAGAAACGGGCGAGGAGGGGAAAGAGCAACTCTCCATCGACACTTTGTTTTGGTTTTCTAAATTTAGCCACCAGCTAGCTAACCGTTGCGCTCATCTCATTTCTTTTGCCTGCCGAGCGAGGCCAAAATATTGGCAAACTCAACAGCCGAGGACG] [+] EMBL BM601492 [CCGGCAAATAAAGCGACCCCGTCTGGTGTGCAATGGCCTCGTCAGATCCGCTGAACGAGTAACTTTCTCAATTTTGTTATCAACGCGAAACGAGAAGAAAGTGCTGCGACCGTTTTGCTACACGCAAAATATAATACCGCCCTGCGCCACCTCTACACACCTTTTCCTGGTCGTCCGTTTGTGTCGTCGTCCCCGGGTGTGGTGTGAGAAAGGATCGGAAAATCGGATTTTCATCTGTGTTGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAAGCAGTGGAGTGGTATTTGCACCAAGTCTAATCGGTGAGAGTAGGTGCGTGTGTGTGCATCGGTCGTCGTGTGGCTAGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAATCGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGATTCCGACCTAAGCGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTCGGTCACAGGGCTGACCGTGGCATACAGCAGGAAGTGACCGATGTGTGTCTGTGGCGCTCTGTGTGCCTGTGCAC ] [+] EMBL BM602419 [ ccGATCGGAAAATCGGATTTTCATCTGTGTTGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAAGCAGTGGAGTGGTATTTGCACCAAGTCTAATCGGTGAGAGTAGGTGCGTGTGTGTGCATCGGTCGTCGTGTGGCTAGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAATCGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGATTCCGACCTAAGCGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTCGGTCACAGGGCTGACCGTGGCATACAGCAGGAAGTGACCGA GTGTGTCTGTGGCGCTCTGTGTGCCTGTGCACGCGCGTCCGTGTGCGTTCATGTAATTAAAGTTCACCCCTGCAGTCGTCGGGGCGGTTCGTAAAACTTGCTGCAGCGCACCGTGCCCCGTAGCCAGCAGCAGTCGATCGAAATTGTAGTGCGAAAAGAAACGGGCGAGGAGGGGAAAGAGCAACTCTCCATCGACACTTTGTTTTGGTTTTCTAAATTTAGCCACCAGCTAGCTAACCGTTGCGCTCATCTCATTTCTTTTGCCTGCCGAGCGAGGCCAAAATATTGGCAAACTCAACAGCCGAGGACG] consensusID : consensus_3887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [AGAAGAAAGTGCTGCGACCGTTTTGCTACACGCAAAATTTAACACCGCCCTGCGCCACCTCTACACACCTTTTCCTGGTCGTCCGTTTGTGTCGTCGTCCCCGGGTGTGGTGTGAGAAAGGATCGGAAAATCGGATTTTCATCTGTGTTGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAGTCAGTGGAATGGTATTTGCACCAAGTCCAATCGGAAGAAGTGCGTGAGAGTAGGCGTTTGTGTGCATCGTCGTGTGGCTGGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAATCGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGACCTAAGCGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTCGGTCACACGGCTGACCGTGGCATACAGCAGGAAGTGACCGAGTGTGTCTGTGGCGCTCTGTGTGCCTGTGCACGCGCGTCCGTGTGCGTTCATGTAATTAAAGTTCACCCCTGCAGTCGTCGGGGCGGTTCGTAAAACTTACTGCAGCGCACCGTGCCCCGTAGCAGTCGATCGAAATTGT] [+] EMBL BX625870 [AGAAGAAAGTGCTGCGACCGTTTTGCTACACGCAAAATTTAACACCGCCCTGCGCCACCTCTACACACCTTTTCCTGGTCGTCCGTTTGTGTCGTCGTCCCCGGGTGTGGTGTGAGAAAGGATCGGAAAATCGGATTTTCATCTGTGTTGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAGTCAGTGGAATGGTATTTGCACCAAGTCCAATCGGAAGAAGTGCGTGAGAGTAGGCGTTTGTGTGCATCGTCGTGTGGCTGGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAATCGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGACCTAAGCGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTCGGTCACACGGCTGACCGTGGCATACAGCAGGAAGTGACCGAGTGTGTCTGTGGCGCTCTGTGTGCCTGTGCACGCGCGTCCGTGTGCGTTCATGTAATTAAAGTTCACCCCTGCAGTCGTCGGGGCGGTTCGTAAAACTTACTGCAGCGCACCGTGCCCCGTAGCAGTCGATCGAAATTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3887#0 CCGGCAAATAAAGCGACCCCGTCTGGTGTGCAATGGCCTCGTCAGATCCGCTGAACGAGT 60 consensus_3887#1 ------------------------------------------------------------ consensus_3887#0 AACTTTCTCAATTTTGTTATCAACGCGAAACGAGAAGAAAGTGCTGCGACCGTTTTGCTA 120 consensus_3887#1 --------------------------------AGAAGAAAGTGCTGCGACCGTTTTGCTA 28 **************************** consensus_3887#0 CACGCAAAATATAATACCGCCCTGCGCCACCTCTACACACCTTTTCCTGGTCGTCCGTTT 180 consensus_3887#1 CACGCAAAATTTAACACCGCCCTGCGCCACCTCTACACACCTTTTCCTGGTCGTCCGTTT 88 ********** *** ********************************************* consensus_3887#0 GTGTCGTCGTCCCCGGGTGTGGTGTGAGAAAGGATCGGAAAATCGGATTTTCATCTGTGT 240 consensus_3887#1 GTGTCGTCGTCCCCGGGTGTGGTGTGAGAAAGGATCGGAAAATCGGATTTTCATCTGTGT 148 ************************************************************ consensus_3887#0 TGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAA 300 consensus_3887#1 TGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAG 208 *********************************************************** consensus_3887#0 GCAGTGGAGTGGTATTTGCACCAAGTCTAATCGGTGAGAGTAGGTGCGTGT----GTGTG 356 consensus_3887#1 TCAGTGGAATGGTATTTGCACCAAGTCCAATCGGAAGAAGTGCGTGAGAGTAGGCGTTTG 268 ******* ****************** ****** *** *** * ** ** ** consensus_3887#0 CATCGGTCGTCGTGTGGCTAGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAAT 416 consensus_3887#1 TGTGCATCGTCGTGTGGCTGGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAAT 328 * ************* **************************************** consensus_3887#0 CGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGATTCCGACCTAAG 476 consensus_3887#1 CGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGA------CCTAAG 382 ************************************************ ****** consensus_3887#0 CGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTC 536 consensus_3887#1 CGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTC 442 ************************************************************ consensus_3887#0 GGTCACAGGGCTGACCGTGGCATACAGCAGGAAGTGACCGATGTGTGTCTGTGGCGCTCT 596 consensus_3887#1 GGTCACACGGCTGACCGTGGCATACAGCAGGAAGTGACCGA-GTGTGTCTGTGGCGCTCT 501 ******* ********************************* ****************** consensus_3887#0 GTGTGCCTGTGCACGCGCGTCCGTGTGCGTTCATGTAATTAAAGTTCACCCCTGCAGTCG 656 consensus_3887#1 GTGTGCCTGTGCACGCGCGTCCGTGTGCGTTCATGTAATTAAAGTTCACCCCTGCAGTCG 561 ************************************************************ consensus_3887#0 TCGGGGCGGTTCGTAAAACTTGCTGCAGCGCACCGTGCCCCGTAGCCAGCAGCAGTCGAT 716 consensus_3887#1 TCGGGGCGGTTCGTAAAACTTACTGCAGCGCACCGTGCCCCGTA-------GCAGTCGAT 614 ********************* ********************** ********* consensus_3887#0 CGAAATTGTAGTGCGAAAAGAAACGGGCGAGGAGGGGAAAGAGCAACTCTCCATCGACAC 776 consensus_3887#1 CGAAATTGT--------------------------------------------------- 623 ********* consensus_3887#0 TTTGTTTTGGTTTTCTAAATTTAGCCACCAGCTAGCTAACCGTTGCGCTCATCTCATTTC 836 consensus_3887#1 ------------------------------------------------------------ consensus_3887#0 TTTTGCCTGCCGAGCGAGGCCAAAATATTGGCAAACTCAACAGCCGAGGACG 888 consensus_3887#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||