cluster # 3888

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Anopheles gambiae
cluster # 3888 cluster # 3888 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3888#0 length = 1184 sequences # 1

consensus_3888#1 length = 196 sequences # 2

consensusID : consensus_3888#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1184
fasta sequence

                              [CAGAATTCCCGAGGTTAACTTCCTAATGACAACCGAGCTGCCGGAAAGCTGTGTGTGATATCTGATCGACGTTCGCAAGGGTTCGGGTGAGAGCTGCTGTATAGAAACGGCAAGGGGCATTTCCTGCCCTACTACGTGTTGGTCAGTTAGAAAAGACGTACTCTGCAACAAAAAAAAAACCACTACCCACAATACGGTGCTGAGTTAGTGTACGTACTATTGTACGTATTCCGCGCATTTGCATTCAATATGTGCTGTCTATCATTCCCTGGCTATANCAGAATCGTTGTTGTGTACAGTANTATGTATNGTGTTGTATCCTNGGGTGAGGGAGCTNGTTCCATATTCCGTAACCGCAGGCTTGTATTCGACNTCCTATCTATANNCCCCCCCAACCCCGAAAATTGGGGGAAACAGGTATTACAAAACCAAACTATACCGAGGCGACAAACAACCTTGGGCCAANCGTGGCCATCTCNAACCACTACCAANCACAACACGGTCACTCTATCCGCACCACCCACCNTCCCCTNCNTCCTCCAACTTCACTACCCATAACCCCAAACCATGGCATGCGGACCTACAGNNACGGGCCAGGAANCGTGGCGCANGCNATGCNACACCCCCTAAACNNCAGCNTTACCAACACGAGCCCAACCCTCNNCCCCCCTAACTNGGGANAANCCNCNGAAGGCATNATGGCNANCAAGACACCACGCTANAGCACAACCGCTAGCTCGCACNACACCCAACACGGGGCACTACGCGAAANACACAGCAAACACAACTNAACACCAANACCCNCGACCACACNCACCAAACACAAAACTCCAAAACAGGCCACACTANAACAAGGACCTTTACCCTCCCGCGCCAGTCTCATANCCACGACGCCAGGCANACACAAACAATACCAGGCCCATCCCCCGCACAACACAGCCCCACGANCCCGGGTGNCCCNNACANAGGGCAAACANAGCGGGCATGAACCCNGNCCATATGCACGAACCGCGGCAGGAACCCAAACANTCCACAGACGNNCACACAACGCCCTCAACCACAACACCCCCCACAACACCCACAACGAACACACCCCCCCCCCGCCANACCACCAGCCCCCCCGCCACCCCCCCACACCCCCACCGCCCCAGCACCACCCACCNNCCCCAACAGCGCNGCCGACA]

[+] EMBL AL695506             [CAGAATTCCCGAGGTTAACTTCCTAATGACAACCGAGCTGCCGGAAAGCTGTGTGTGATATCTGATCGACGTTCGCAAGGGTTCGGGTGAGAGCTGCTGTATAGAAACGGCAAGGGGCATTTCCTGCCCTACTACGTGTTGGTCAGTTAGAAAAGACGTACTCTGCAACAAAAAAAAAACCACTACCCACAATACGGTGCTGAGTTAGTGTACGTACTATTGTACGTATTCCGCGCATTTGCATTCAATATGTGCTGTCTATCATTCCCTGGCTATANCAGAATCGTTGTTGTGTACAGTANTATGTATNGTGTTGTATCCTNGGGTGAGGGAGCTNGTTCCATATTCCGTAACCGCAGGCTTGTATTCGACNTCCTATCTATANNCCCCCCCAACCCCGAAAATTGGGGGAAACAGGTATTACAAAACCAAACTATACCGAGGCGACAAACAACCTTGGGCCAANCGTGGCCATCTCNAACCACTACCAANCACAACACGGTCACTCTATCCGCACCACCCACCNTCCCCTNCNTCCTCCAACTTCACTACCCATAACCCCAAACCATGGCATGCGGACCTACAGNNACGGGCCAGGAANCGTGGCGCANGCNATGCNACACCCCCTAAACNNCAGCNTTACCAACACGAGCCCAACCCTCNNCCCCCCTAACTNGGGANAANCCNCNGAAGGCATNATGGCNANCAAGACACCACGCTANAGCACAACCGCTAGCTCGCACNACACCCAACACGGGGCACTACGCGAAANACACAGCAAACACAACTNAACACCAANACCCNCGACCACACNCACCAAACACAAAACTCCAAAACAGGCCACACTANAACAAGGACCTTTACCCTCCCGCGCCAGTCTCATANCCACGACGCCAGGCANACACAAACAATACCAGGCCCATCCCCCGCACAACACAGCCCCACGANCCCGGGTGNCCCNNACANAGGGCAAACANAGCGGGCATGAACCCNGNCCATATGCACGAACCGCGGCAGGAACCCAAACANTCCACAGACGNNCACACAACGCCCTCAACCACAACACCCCCCACAACACCCACAACGAACACACCCCCCCCCCGCCANACCACCAGCCCCCCCGCCACCCCCCCACACCCCCACCGCCCCAGCACCACCCACCNNCCCCAACAGCGCNGCCGACA]




>consensus_3888#0
CAGAATTCCCGAGGTTAACTTCCTAATGACAACCGAGCTGCCGGAAAGCTGTGTGTGATA
TCTGATCGACGTTCGCAAGGGTTCGGGTGAGAGCTGCTGTATAGAAACGGCAAGGGGCAT
TTCCTGCCCTACTACGTGTTGGTCAGTTAGAAAAGACGTACTCTGCAACAAAAAAAAAAC
CACTACCCACAATACGGTGCTGAGTTAGTGTACGTACTATTGTACGTATTCCGCGCATTT
GCATTCAATATGTGCTGTCTATCATTCCCTGGCTATANCAGAATCGTTGTTGTGTACAGT
ANTATGTATNGTGTTGTATCCTNGGGTGAGGGAGCTNGTTCCATATTCCGTAACCGCAGG
CTTGTATTCGACNTCCTATCTATANNCCCCCCCAACCCCGAAAATTGGGGGAAACAGGTA
TTACAAAACCAAACTATACCGAGGCGACAAACAACCTTGGGCCAANCGTGGCCATCTCNA
ACCACTACCAANCACAACACGGTCACTCTATCCGCACCACCCACCNTCCCCTNCNTCCTC
CAACTTCACTACCCATAACCCCAAACCATGGCATGCGGACCTACAGNNACGGGCCAGGAA
NCGTGGCGCANGCNATGCNACACCCCCTAAACNNCAGCNTTACCAACACGAGCCCAACCC
TCNNCCCCCCTAACTNGGGANAANCCNCNGAAGGCATNATGGCNANCAAGACACCACGCT
ANAGCACAACCGCTAGCTCGCACNACACCCAACACGGGGCACTACGCGAAANACACAGCA
AACACAACTNAACACCAANACCCNCGACCACACNCACCAAACACAAAACTCCAAAACAGG
CCACACTANAACAAGGACCTTTACCCTCCCGCGCCAGTCTCATANCCACGACGCCAGGCA
NACACAAACAATACCAGGCCCATCCCCCGCACAACACAGCCCCACGANCCCGGGTGNCCC
NNACANAGGGCAAACANAGCGGGCATGAACCCNGNCCATATGCACGAACCGCGGCAGGAA
CCCAAACANTCCACAGACGNNCACACAACGCCCTCAACCACAACACCCCCCACAACACCC
ACAACGAACACACCCCCCCCCCGCCANACCACCAGCCCCCCCGCCACCCCCCCACACCCC
CACCGCCCCAGCACCACCCACCNNCCCCAACAGCGCNGCCGACA

consensusID : consensus_3888#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 196
fasta sequence

                              [GGCATTTCCTGCCCTACTCGTGTTGGTCAGTTAGAAAAGACGTCTCTGCAACAAAAAAAAAAAACCACTCCCACAATCGGTGCTGAGTTAGTGTCGTCTTTGTACGTTTTCGGATTGATTCAATTTGTGCTGTCTATCATTCCTGCTTTTTTTTTGTGTGTGTCAGTTTTGTATGTGTGTTATCTGGGTGAGGAGC]

[+] EMBL BX613968             [GGCATTTCCTGCCCTACTCGTGTTGGTCAGTTAGAAAAGACGTCTCTGCAACAAAAAAAAAAAACCACTCCCACAATCGGTGCTGAGTTAGTGTCGTCTTTGTACGTTTTCGGATTGATTCAATTTGTGCTGTCTATCATTCCTGC                                                  ]
[+] EMBL BX613967             [                                  AAAAGACGTCTCTGCAACAAAAAAAAAAAACCACTCCCACAATCGGGGCTGAGTTAGTGTCGTCTTTGTACGTTTTCGGATTGATTCAATTTGTGCTGTCTATCATTCCTGCTTTTTTTTTGTGTGTGTCAGTTTTGTATGTGTGTTATCTGGGTGAGGAGC]




>consensus_3888#1
GGCATTTCCTGCCCTACTCGTGTTGGTCAGTTAGAAAAGACGTCTCTGCAACAAAAAAAA
AAAACCACTCCCACAATCGGTGCTGAGTTAGTGTCGTCTTTGTACGTTTTCGGATTGATT
CAATTTGTGCTGTCTATCATTCCTGCTTTTTTTTTGTGTGTGTCAGTTTTGTATGTGTGT
TATCTGGGTGAGGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3888#0      CAGAATTCCCGAGGTTAACTTCCTAATGACAACCGAGCTGCCGGAAAGCTGTGTGTGATA 60
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      TCTGATCGACGTTCGCAAGGGTTCGGGTGAGAGCTGCTGTATAGAAACGGCAAGGGGCAT 120
consensus_3888#1      -------------------------------------------------------GGCAT 5
                                                                             *****

consensus_3888#0      TTCCTGCCCTACTACGTGTTGGTCAGTTAGAAAAGACGTACTCTGCAACAAAAAAAAAA- 179
consensus_3888#1      TTCCTGCCCTACT-CGTGTTGGTCAGTTAGAAAAGACGT-CTCTGCAACAAAAAAAAAAA 63
                      ************* ************************* ******************* 

consensus_3888#0      -CCACTACCCACAATACGGTGCTGAGTTAGTGTACGTACTATTGTACGTATTCCGCGCAT 238
consensus_3888#1      ACCACT-CCCACAAT-CGGTGCTGAGTTAGTGT---CGTCTTTGTACGTTTTC---GGAT 115
                       ***** ******** *****************        ******** ***   * **

consensus_3888#0      TTGCATTCAATATGTGCTGTCTATCATTCCCTGGCTATANCAGAATCGTTGTTGTGTACA 298
consensus_3888#1      TG--ATTCAATTTGTGCTGTCTATCATTCCT--GCT---------TTTTTTTTGTGTGTG 162
                      *   ******* ******************   ***         *  ** ******   

consensus_3888#0      GTANTATGTATNGTGTTGTATCCTNGGGTGAGGGAGCTNGTTCCATATTCCGTAACCGCA 358
consensus_3888#1      TCAGTTTTGTATGTGTGTTATC--TGGGTGAGG-AGC----------------------- 196
                        * * *     ****  ****   ******** ***                       

consensus_3888#0      GGCTTGTATTCGACNTCCTATCTATANNCCCCCCCAACCCCGAAAATTGGGGGAAACAGG 418
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      TATTACAAAACCAAACTATACCGAGGCGACAAACAACCTTGGGCCAANCGTGGCCATCTC 478
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      NAACCACTACCAANCACAACACGGTCACTCTATCCGCACCACCCACCNTCCCCTNCNTCC 538
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      TCCAACTTCACTACCCATAACCCCAAACCATGGCATGCGGACCTACAGNNACGGGCCAGG 598
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      AANCGTGGCGCANGCNATGCNACACCCCCTAAACNNCAGCNTTACCAACACGAGCCCAAC 658
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      CCTCNNCCCCCCTAACTNGGGANAANCCNCNGAAGGCATNATGGCNANCAAGACACCACG 718
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      CTANAGCACAACCGCTAGCTCGCACNACACCCAACACGGGGCACTACGCGAAANACACAG 778
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      CAAACACAACTNAACACCAANACCCNCGACCACACNCACCAAACACAAAACTCCAAAACA 838
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      GGCCACACTANAACAAGGACCTTTACCCTCCCGCGCCAGTCTCATANCCACGACGCCAGG 898
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      CANACACAAACAATACCAGGCCCATCCCCCGCACAACACAGCCCCACGANCCCGGGTGNC 958
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      CCNNACANAGGGCAAACANAGCGGGCATGAACCCNGNCCATATGCACGAACCGCGGCAGG 1018
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      AACCCAAACANTCCACAGACGNNCACACAACGCCCTCAACCACAACACCCCCCACAACAC 1078
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      CCACAACGAACACACCCCCCCCCCGCCANACCACCAGCCCCCCCGCCACCCCCCCACACC 1138
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      CCCACCGCCCCAGCACCACCCACCNNCCCCAACAGCGCNGCCGACA 1184
consensus_3888#1      ----------------------------------------------