Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 389 cluster # 389       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_389#0 length = 675 sequences # 1  
consensus_389#1 length = 666 sequences # 1  

consensusID : consensus_389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence
                              [CCGCACGACGATACAATCATAAGAGAAGAGGATACATGAAGAGACAGTTGGTGAATTGGTAGAGGAGAGTTGCAGAGCGATACAAATGAAGGAAAGAGGACACAGATGATGCACACTCACACATCTAGACGACAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGCCGGAGAGTCGGCCCGATTT]

[+] EMBL BM638688             [CCGCACGACGATACAATCATAAGAGAAGAGGATACATGAAGAGACAGTTGGTGAATTGGTAGAGGAGAGTTGCAGAGCGATACAAATGAAGGAAAGAGGACACAGATGATGCACACTCACACATCTAGACGACAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGCCGGAGAGTCGGCCCGATTT]


>consensus_389#0 CCGCACGACGATACAATCATAAGAGAAGAGGATACATGAAGAGACAGTTGGTGAATTGGT AGAGGAGAGTTGCAGAGCGATACAAATGAAGGAAAGAGGACACAGATGATGCACACTCAC ACATCTAGACGACAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGAT GACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGAC GACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCG TATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGA AGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGG CTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCAT TGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCG GAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACAT GATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGCCGGA GAGTCGGCCCGATTT



consensusID : consensus_389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence
                              [CCGAGAACCTTCGTTTGGTGTTTTGGTGTTGACTGGCTCAACCGAATAACTATTTCAGAAACAATGAAAACATTCCAGTGAATGCAGCTATCGCAGGCCAGTGATCGAAAGTCGCCCGTTTCGTTTTCCATTGAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGGCGGAGAGTCG]

[+] EMBL BM624924             [CCGAGAACCTTCGTTTGGTGTTTTGGTGTTGACTGGCTCAACCGAATAACTATTTCAGAAACAATGAAAACATTCCAGTGAATGCAGCTATCGCAGGCCAGTGATCGAAAGTCGCCCGTTTCGTTTTCCATTGAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGGCGGAGAGTCG]


>consensus_389#1 CCGAGAACCTTCGTTTGGTGTTTTGGTGTTGACTGGCTCAACCGAATAACTATTTCAGAA ACAATGAAAACATTCCAGTGAATGCAGCTATCGCAGGCCAGTGATCGAAAGTCGCCCGTT TCGTTTTCCATTGAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGAT GACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGAC GACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCG TATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGA AGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGG CTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCAT TGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCG GAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACAT GATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGGCGGA GAGTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_389#0      CCGCACGACGATACAATCATAAGAGAAGAGGATACATGAAGAGACAGTTGGTGAATTGGT 60
consensus_389#1      -----CCGAGA-ACCTTCGTTTGGTGTTTTGGTGTTGACTGGCTCAACCGAATAACTATT 54
                          *   ** **  ** *  *       * *       *   **   *   ** *  *

consensus_389#0      AGAGGAGAGTTGCAGAGCGATACAAATGAAGGAA---AGAGGACACAGATGATGCACACT 117
consensus_389#1      TCAGAAACAATGAAAA--CATTCCAGTGAATGCAGCTATCGCAGGCCAGTGATCGAAAGT 112
                       ** *    ** * *   ** * * **** * *   *  * *  *   ****  * * *

consensus_389#0      CACACATCTAGACGAC-----AAGACGCTAATCACCTATAAAACGGCCATGGATAAAATG 172
consensus_389#1      CGCCCGTTTCGTTTTCCATTGAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATG 172
                     * * * * * *    *     ***************************************

consensus_389#0      TCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGA 232
consensus_389#1      TCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGA 232
                     ************************************************************

consensus_389#0      AAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATC 292
consensus_389#1      AAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATC 292
                     ************************************************************

consensus_389#0      GAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCT 352
consensus_389#1      GAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCT 352
                     ************************************************************

consensus_389#0      TCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTAC 412
consensus_389#1      TCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTAC 412
                     ************************************************************

consensus_389#0      CATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATC 472
consensus_389#1      CATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATC 472
                     ************************************************************

consensus_389#0      GAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCC 532
consensus_389#1      GAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCC 532
                     ************************************************************

consensus_389#0      ATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGG 592
consensus_389#1      ATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGG 592
                     ************************************************************

consensus_389#0      GTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTG 652
consensus_389#1      GTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTG 652
                     ************************************************************

consensus_389#0      TGGCCGGAGAGTCGGCCCGATTT 675
consensus_389#1      TGGGCGGAGAGTCG--------- 666
                     *** **********         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)