These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [CCGCACGACGATACAATCATAAGAGAAGAGGATACATGAAGAGACAGTTGGTGAATTGGTAGAGGAGAGTTGCAGAGCGATACAAATGAAGGAAAGAGGACACAGATGATGCACACTCACACATCTAGACGACAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGCCGGAGAGTCGGCCCGATTT] [+] EMBL BM638688 [CCGCACGACGATACAATCATAAGAGAAGAGGATACATGAAGAGACAGTTGGTGAATTGGTAGAGGAGAGTTGCAGAGCGATACAAATGAAGGAAAGAGGACACAGATGATGCACACTCACACATCTAGACGACAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGCCGGAGAGTCGGCCCGATTT] consensusID : consensus_389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CCGAGAACCTTCGTTTGGTGTTTTGGTGTTGACTGGCTCAACCGAATAACTATTTCAGAAACAATGAAAACATTCCAGTGAATGCAGCTATCGCAGGCCAGTGATCGAAAGTCGCCCGTTTCGTTTTCCATTGAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGGCGGAGAGTCG] [+] EMBL BM624924 [CCGAGAACCTTCGTTTGGTGTTTTGGTGTTGACTGGCTCAACCGAATAACTATTTCAGAAACAATGAAAACATTCCAGTGAATGCAGCTATCGCAGGCCAGTGATCGAAAGTCGCCCGTTTCGTTTTCCATTGAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATGTCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGAAAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATCGAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCTTCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTACCATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATCGAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCCATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGGGTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTGTGGGCGGAGAGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_389#0 CCGCACGACGATACAATCATAAGAGAAGAGGATACATGAAGAGACAGTTGGTGAATTGGT 60 consensus_389#1 -----CCGAGA-ACCTTCGTTTGGTGTTTTGGTGTTGACTGGCTCAACCGAATAACTATT 54 * ** ** ** * * * * * ** * ** * * consensus_389#0 AGAGGAGAGTTGCAGAGCGATACAAATGAAGGAA---AGAGGACACAGATGATGCACACT 117 consensus_389#1 TCAGAAACAATGAAAA--CATTCCAGTGAATGCAGCTATCGCAGGCCAGTGATCGAAAGT 112 ** * ** * * ** * * **** * * * * * * **** * * * consensus_389#0 CACACATCTAGACGAC-----AAGACGCTAATCACCTATAAAACGGCCATGGATAAAATG 172 consensus_389#1 CGCCCGTTTCGTTTTCCATTGAAGACGCTAATCACCTATAAAACGGCCATGGATAAAATG 172 * * * * * * * *************************************** consensus_389#0 TCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGA 232 consensus_389#1 TCCAAGATGACGGTGGTGTTGTTTGCTGTTCTGCTGACGACCGCATCGCTAGCCCTCGGA 232 ************************************************************ consensus_389#0 AAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATC 292 consensus_389#1 AAGGAGACGACCTACAAAACGGACGATGTGTCCGTGTCGGAGCTCTTCTCGTTGCGTATC 292 ************************************************************ consensus_389#0 GAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCT 352 consensus_389#1 GAGCCGCGTATGTTCAATTGGACTTACGAGGGGCTGAGCGAGCAGTTTCTGTACCGTTCT 352 ************************************************************ consensus_389#0 TCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTAC 412 consensus_389#1 TCGCTAGAAGGCTATCCGGATCTGCCGTCCTGGATTCGATACATGTACAGCCCCGAGTAC 412 ************************************************************ consensus_389#0 CATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATC 472 consensus_389#1 CATTCCGGCTTTCTGTACGGTACACCACCGCTTCGGACGGCCGATACGCGGGTGCCGATC 472 ************************************************************ consensus_389#0 GAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCC 532 consensus_389#1 GAAATCATTGCCCTGAACCGGCTGACGTACGAGACGAAGCGGCTCATACTGATGCTTGCC 532 ************************************************************ consensus_389#0 ATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGG 592 consensus_389#1 ATCCACCGGAAGCAACCAGCCAAGCACGTAATCCAGATGAAGATTGACAACCTGAACTGG 592 ************************************************************ consensus_389#0 GTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTG 652 consensus_389#1 GTGCACATGATGGATCCGGGGCGCATCGAGAACCTGAAGAACATCTTCCGCAACGATCTG 652 ************************************************************ consensus_389#0 TGGCCGGAGAGTCGGCCCGATTT 675 consensus_389#1 TGGGCGGAGAGTCG--------- 666 *** ********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||