cluster # 3891

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Anopheles gambiae
cluster # 3891 cluster # 3891 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3891#0 length = 746 sequences # 2

consensus_3891#1 length = 693 sequences # 1

consensusID : consensus_3891#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 746
fasta sequence

                              [CCGGAACAGTAGTTGTGTGAAAGCTTTTAAAAACAAATAATCGCTACCTTTAATCATGATAAAACACATTGCGCAATACCAACTACGGAAACACGACAAAATACTAATGTTGGATATATAAATCTTAAGCAGCTCTCGCGTACAATAATATCAACCCTTTTTTTAAGTGCGTTTTAATTTACACCATGCGTTTGTTTTATTATTTAGCTGAACAACAACAAAAAGAACATTCTGCATCCGAAAACTTATGGCGGCGCGCCTCGTCGGTGATCGCTACTTTCTCGATCTCTTTCGCTTCCCAAACTCTAATCTTCCGCTTTTACCGAAAGCTGGTTTGTTTGTAATATCACAGATCCTCAGTAATCATAAGTGTAGTTTTCTAGTCTTCCCGGGCCAATGCGATTCAGAGCGTGGAGGGGCAGTTTTTGTTCTTCGCAATGAACAAACGGTCCGGATCGAGGCTTAGCTGCTCAAGGGCGTTGTAGATCTTTTTCCTAATATCGGTCGAGTAGTCTCGATCACGTCCCAGCAGCCAGATTTGATCAGCGTGAACCGCCACAAAGCTCGTGCACGACCAGAGAATGGCAAAGTTGTCGTAGTTGGTGTAGAGCACCTGGTAGCGGCCAGATCCTGGCAGTAGCCGCGCAATCGCCGTTGGAAGCCGTGACTGGAGCTGGACGTTCATGATGGAGGACGTTTCACTCTCCGGCACGGCTTCCCCGATGCTGATCGATGGGTTGCCCCGG]

[+] EMBL BM593780             [CCGGAACAGTAGTTGTGTGAAAGCTTTTAAAAACAAATAATCGCTACCTTTAATCATGATAAAACACATTGCGCAATACCAACTACGGAAACACGACAAAATACTAATGTTGGATATATAAATCTTAAGCAGCTCTCGCGTACAATAATATCAACCCTTTTTTTAAGTGCGTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL BM575413             [                                                                             ACCAACTACGGAAACACGACAAAATACTAATGTTGGATATATAAATCTTAAGCAGCTCTCGCGTACAATAATATCAACCC TTTTTTAAGTGCGTTTTAATTTACACCATGCGTTTGTTTTATTATTTAGCTGAACAACAACAAAAAGAACATTCTGCATCCGAAAACTTATGGCGGCGCGCCTCGTCGGTGATCGCTACTTTCTCGATCTCTTTCGCTTCCCAAACTCTAATCTTCCGCTTTTACCGAAAGCTGGTTTGTTTGTAATATCACAGATCCTCAGTAATCATAAGTGTAGTTTTCTAGTCTTCCCGGGCCAATGCGATTCAGAGCGTGGAGGGGCAGTTTTTGTTCTTCGCAATGAACAAACGGTCCGGATCGAGGCTTAGCTGCTCAAGGGCGTTGTAGATCTTTTTCCTAATATCGGTCGAGTAGTCTCGATCACGTCCCAGCAGCCAGATTTGATCAGCGTGAACCGCCACAAAGCTCGTGCACGACCAGAGAATGGCAAAGTTGTCGTAGTTGGTGTAGAGCACCTGGTAGCGGCCAGATCCTGGCAGTAGCCGCGCAATCGCCGTTGGAAGCCGTGACTGGAGCTGGACGTTCATGATGGAGGACGTTTCACTCTCCGGCACGGCTTCCCCGATGCTGATCGATGGGTTGCCCCGG]




>consensus_3891#0
CCGGAACAGTAGTTGTGTGAAAGCTTTTAAAAACAAATAATCGCTACCTTTAATCATGAT
AAAACACATTGCGCAATACCAACTACGGAAACACGACAAAATACTAATGTTGGATATATA
AATCTTAAGCAGCTCTCGCGTACAATAATATCAACCCTTTTTTTAAGTGCGTTTTAATTT
ACACCATGCGTTTGTTTTATTATTTAGCTGAACAACAACAAAAAGAACATTCTGCATCCG
AAAACTTATGGCGGCGCGCCTCGTCGGTGATCGCTACTTTCTCGATCTCTTTCGCTTCCC
AAACTCTAATCTTCCGCTTTTACCGAAAGCTGGTTTGTTTGTAATATCACAGATCCTCAG
TAATCATAAGTGTAGTTTTCTAGTCTTCCCGGGCCAATGCGATTCAGAGCGTGGAGGGGC
AGTTTTTGTTCTTCGCAATGAACAAACGGTCCGGATCGAGGCTTAGCTGCTCAAGGGCGT
TGTAGATCTTTTTCCTAATATCGGTCGAGTAGTCTCGATCACGTCCCAGCAGCCAGATTT
GATCAGCGTGAACCGCCACAAAGCTCGTGCACGACCAGAGAATGGCAAAGTTGTCGTAGT
TGGTGTAGAGCACCTGGTAGCGGCCAGATCCTGGCAGTAGCCGCGCAATCGCCGTTGGAA
GCCGTGACTGGAGCTGGACGTTCATGATGGAGGACGTTTCACTCTCCGGCACGGCTTCCC
CGATGCTGATCGATGGGTTGCCCCGG

consensusID : consensus_3891#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [TAATGGCGCGTGGGTCCCCGTTTTGCGGATTTTGTATTGTNACCAGGAGGTGGNGGTGGAANAGCCGTTTTGTANANCACATNTATTGNNTTGCCTGGCTNACCCCTNTTTATATNCNATGATTGAATACACCGATGGTGGCCGCTNTATTNGCCCAATGNCTTCGCGGGTTTAGCTCGGGTACGNATAAGTACGTTATTGGTTTGGTAGANTAGTTGTATGCTTGAAGCNANGCTCTCCGCGTTACTANATAATATTCNAACCCCGTTGTTTTTTAAGTGTCGTTTGTTAATTTTACAACCATGCGTGTTGTTTTGTTACTTGAGTTCTAGCGTGAACTATCTTACTTGTGAAGTACNTTCGTGTCATGCTCGATATACTTATGCGGTCGCGCGCTCGCTCGGTGATCGCTACTTTCTCGATCNCGTTTCGTCTTCCCAAACTNCTAATCTTCCGCTTTTGACCGAAAGCTGGTTTGTTTGTAATATCACAGATCCTCAGTAATCATAAGTGTAGTTTTCTAGTCGTCCCGGGCCAATGCGATTTAGAGCGTGGAGGGGCAGTTTTTGTTCTTCGCAATGAACAATACGTCCGGATCGAGGCTTAGCTGCTCAAGGGCGTTGTAGATCTTTTTCNNAAAATCGGGCGAGTAGTCTCGATCACATTAACCGGGGATCTGCTTGAGGCATCCCC]

[-] EMBL AL695572             [TAATGGCGCGTGGGTCCCCGTTTTGCGGATTTTGTATTGTNACCAGGAGGTGGNGGTGGAANAGCCGTTTTGTANANCACATNTATTGNNTTGCCTGGCTNACCCCTNTTTATATNCNATGATTGAATACACCGATGGTGGCCGCTNTATTNGCCCAATGNCTTCGCGGGTTTAGCTCGGGTACGNATAAGTACGTTATTGGTTTGGTAGANTAGTTGTATGCTTGAAGCNANGCTCTCCGCGTTACTANATAATATTCNAACCCCGTTGTTTTTTAAGTGTCGTTTGTTAATTTTACAACCATGCGTGTTGTTTTGTTACTTGAGTTCTAGCGTGAACTATCTTACTTGTGAAGTACNTTCGTGTCATGCTCGATATACTTATGCGGTCGCGCGCTCGCTCGGTGATCGCTACTTTCTCGATCNCGTTTCGTCTTCCCAAACTNCTAATCTTCCGCTTTTGACCGAAAGCTGGTTTGTTTGTAATATCACAGATCCTCAGTAATCATAAGTGTAGTTTTCTAGTCGTCCCGGGCCAATGCGATTTAGAGCGTGGAGGGGCAGTTTTTGTTCTTCGCAATGAACAATACGTCCGGATCGAGGCTTAGCTGCTCAAGGGCGTTGTAGATCTTTTTCNNAAAATCGGGCGAGTAGTCTCGATCACATTAACCGGGGATCTGCTTGAGGCATCCCC]




>consensus_3891#1
TAATGGCGCGTGGGTCCCCGTTTTGCGGATTTTGTATTGTNACCAGGAGGTGGNGGTGGA
ANAGCCGTTTTGTANANCACATNTATTGNNTTGCCTGGCTNACCCCTNTTTATATNCNAT
GATTGAATACACCGATGGTGGCCGCTNTATTNGCCCAATGNCTTCGCGGGTTTAGCTCGG
GTACGNATAAGTACGTTATTGGTTTGGTAGANTAGTTGTATGCTTGAAGCNANGCTCTCC
GCGTTACTANATAATATTCNAACCCCGTTGTTTTTTAAGTGTCGTTTGTTAATTTTACAA
CCATGCGTGTTGTTTTGTTACTTGAGTTCTAGCGTGAACTATCTTACTTGTGAAGTACNT
TCGTGTCATGCTCGATATACTTATGCGGTCGCGCGCTCGCTCGGTGATCGCTACTTTCTC
GATCNCGTTTCGTCTTCCCAAACTNCTAATCTTCCGCTTTTGACCGAAAGCTGGTTTGTT
TGTAATATCACAGATCCTCAGTAATCATAAGTGTAGTTTTCTAGTCGTCCCGGGCCAATG
CGATTTAGAGCGTGGAGGGGCAGTTTTTGTTCTTCGCAATGAACAATACGTCCGGATCGA
GGCTTAGCTGCTCAAGGGCGTTGTAGATCTTTTTCNNAAAATCGGGCGAGTAGTCTCGAT
CACATTAACCGGGGATCTGCTTGAGGCATCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3891#0      -------------------------------------------------------CCGGA 5
consensus_3891#1      TAATGGCGCGTGGGTCCCCGTTTTGCGGATTTTGTATTGTNACCAGGAGGTGGNGGTGGA 60
                                                                               ***

consensus_3891#0      ACAGTAGTTGTGTGAAA-GCTTTTAAAAAC------AAATAATCGCTACCTTTA-ATCAT 57
consensus_3891#1      ANAGCCGTTTTGTANANCACATNTATTGNNTTGCCTGGCTNACCCCTNTTTATATNCNAT 120
                      * **  *** ***  *   * * **              * * * **   * **    **

consensus_3891#0      GATAAAACACATTG--------CGCAATACCAACT--ACGG-----------------AA 90
consensus_3891#1      GATTGAATACACCGATGGTGGCCGCTNTATTNGCCCAATGNCTTCGCGGGTTTAGCTCGG 180
                      ***  ** ***  *        ***  **    *   * *                    

consensus_3891#0      ACACGACAAAATAC-TAAT--GTTGGATATATAAATCTTAAGC---------AGCTCTC- 137
consensus_3891#1      GTACGNATAAGTACGTTATTGGTTTGGTAGANTAGTTGTATGCTTGAAGCNANGCTCTCC 240
                        ***   ** *** * **  *** * ** *  * *  ** **          ****** 

consensus_3891#0      GCGT-AC--AATAATAT--CAACCCT----TTTTTTAAGTG-CGTTT--TAATTT-ACA- 183
consensus_3891#1      GCGTTACTANATAATATTCNAACCCCGTTGTTTTTTAAGTGTCGTTTGTTAATTTTACAA 300
                      **** **   *******   *****     *********** *****  ****** *** 

consensus_3891#0      CCATGCGT-TTGTTTTATTATTT-------AGC-TGAACAACAACAA----AAAGAACAT 230
consensus_3891#1      CCATGCGTGTTGTTTTGTTACTTGAGTTCTAGCGTGAACTATCTTACTTGTGAAGTACNT 360
                      ******** ******* *** **       *** ***** *    *      *** ** *

consensus_3891#0      TC----TGCATCCGAAA-ACTTATG--GCGGCGCGCCTCGTCGGTGATCGCTACTTTCTC 283
consensus_3891#1      TCGTGTCATGCTCGATATACTTATGCGGTCGCGCGCTCGCTCGGTGATCGCTACTTTCTC 420
                      **          *** * *******  *  ******    ********************

consensus_3891#0      GATCTC-TTTCG-CTTCCCAAACTC-TAATCTTCCGCTTTT-ACCGAAAGCTGGTTTGTT 339
consensus_3891#1      GATCNCGTTTCGTCTTCCCAAACTNCTAATCTTCCGCTTTTGACCGAAAGCTGGTTTGTT 480
                      **** * ***** ***********  *************** ******************

consensus_3891#0      TGTAATATCACAGATCCTCAGTAATCATAAGTGTAGTTTTCTAGTCTTCCCGGGCCAATG 399
consensus_3891#1      TGTAATATCACAGATCCTCAGTAATCATAAGTGTAGTTTTCTAGTCGTCCCGGGCCAATG 540
                      ********************************************** *************

consensus_3891#0      CGATTCAGAGCGTGGAGGGGCAGTTTTTGTTCTTCGCAATGAACAAACGGTCCGGATCGA 459
consensus_3891#1      CGATTTAGAGCGTGGAGGGGCAGTTTTTGTTCTTCGCAATGAACAATACGTCCGGATCGA 600
                      ***** ****************************************   ***********

consensus_3891#0      GGCTTAGCTGCTCAAGGGCGTTGTAGATCTTTTTCCTAATATCGGTCGAGTAGTCTCGAT 519
consensus_3891#1      GGCTTAGCTGCTCAAGGGCGTTGTAGATCTTTTTCNNAAAATCGGGCGAGTAGTCTCGAT 660
                      ***********************************  ** ***** **************

consensus_3891#0      CACGTCCCAGCAGCCAGATTTGATCAGCGTGAACCGCCACAAAGCTCGTGCACGACCAGA 579
consensus_3891#1      CACAT-----TAACCGGG---GATCTGCTTGAGGCATCCCC------------------- 693
                      *** *      * ** *    **** ** ***  *  * *                    

consensus_3891#0      GAATGGCAAAGTTGTCGTAGTTGGTGTAGAGCACCTGGTAGCGGCCAGATCCTGGCAGTA 639
consensus_3891#1      ------------------------------------------------------------
                                                                                  

consensus_3891#0      GCCGCGCAATCGCCGTTGGAAGCCGTGACTGGAGCTGGACGTTCATGATGGAGGACGTTT 699
consensus_3891#1      ------------------------------------------------------------
                                                                                  

consensus_3891#0      CACTCTCCGGCACGGCTTCCCCGATGCTGATCGATGGGTTGCCCCGG 746
consensus_3891#1      -----------------------------------------------