Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3895 cluster # 3895       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3895#0 length = 665 sequences # 2  
consensus_3895#1 length = 521 sequences # 1  

consensusID : consensus_3895#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence
                              [CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGGGTTTCTTCCCACGTTTCGCGGTCATCTGCTTGCTTGCCTCGTTCAGTGCAATCGGTGCTGCTGGGCAGCAGGAACTTTTCCCCCTGTCTATTGTGCACATTAACGACTTTCATGCCCGCTTCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGGGAGCGATGCATCGGTGGGTACGCCCGCACGGTGACGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACGCAATCTACCTGAACGCGGGCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACCGATGGAACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCGATGACGATCGGCAACCATGAGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGACGATCGCGTCGCCGGTGCTGCTGGTAAATGTGGACAACAGTCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTAGAGCGCGGCGGGCGTCGGATCGGGGTGATTGGGGTCATCCTCAGCACGACCGATACAATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGAACGGAAGCGGAA]

[+] EMBL BM587283             [CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGGGTTTCTTCCCACGTTTCGCGGTCATCTGCTTGCTTGCCTCGTTCAGTGCAATCGGTGCTGCTGGGCAGCAGGAACTTTTCCCCCTGTCTATTGTGCACATTAACGACTTTCATGCCCGCTTCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGGGAGCGATGCATCGGTGGGTACGCCCGCACGGTGACGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACGCAATCTACCTGAACGCGGGCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACCGATGGAACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCGATGACGATCGGCAACCATGAGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGACGATCGCGTCGCCGGTGCTGCTGGTAAATGTGGACAACAGTCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTAGAGCGCGGCGGGCGTCGGATCGGGGTGATTGGGGTCATCCTCAGCACGACCGATACAATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGAACGGAAGCGGAA]
[+] EMBL BM608792             [CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGTGTTTCTTCCCACGTTTCGCGGTCATCTGCTTGCTTGCCTCGTTCAGTGCAATCGGTGCTGCTGGGCAGCAGGAGCTTTTCCCCCTGTCTATCGTGCACATTAACGACTTTCATGCCCGCTTCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGTGAGCGATGCATCGGTGGGTACGCCCGCACGGTGTCGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACGCAATCTACCTGAACGCGGGCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACCGATGGAACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCAATGACGATCGGCAACCATGAGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGACGATCGCTTCGCCGGTGCTGCTGGTAAATGTGGACAACAGCCTGGAACCGGAATTTAACCGGTTCAACAAGAGTCTGGTGCTAGAGCGCGGCGGGCGTCGTATCGGGGTGATTGGGGTCATCCTCAGCACGACCGATACGATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGGACGGAAGCGGA ]


>consensus_3895#0 CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGG GTTTCTTCCCACGTTTCGCGGTCATCTGCTTGCTTGCCTCGTTCAGTGCAATCGGTGCTG CTGGGCAGCAGGAACTTTTCCCCCTGTCTATTGTGCACATTAACGACTTTCATGCCCGCT TCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGGGAGCGATGCATCG GTGGGTACGCCCGCACGGTGACGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACGCAA TCTACCTGAACGCGGGCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACCGATGGA ACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCGATGACGATCGGCAACCATG AGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGACGATCGCGTCGCCGGTGC TGCTGGTAAATGTGGACAACAGTCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGG TGCTAGAGCGCGGCGGGCGTCGGATCGGGGTGATTGGGGTCATCCTCAGCACGACCGATA CAATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGAACGGAAG CGGAA



consensusID : consensus_3895#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence
                              [AGAATCCCCGAGGTTATGTACCGTTTCTGGAGACGATCGCTTCGCCGGTGCTGCTGGTAAATGTGGACAACAGCCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTGGAGCGCGGCTGTGGCTGTCGGATCGGCGTGATTGGGGTCATCCTCAGCACGACCGATACGATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGGACGGGAAGCGGAACACCTTACAGCTCGGGTTGCGATATTATCGTCGTCCTGTCGCACTGTGGCATCGATGTTGGATCGTTCGATCGCGGCGNAATTGTTGGCCGCTGGTGGACCATCCATTGTGGATGAGGCCATTCGCACAGGTTCCTGTACACCGGGCGATCATCCGACCATTCCGATGAATNCCGGTGTTCCGAATTATCAAANGGGTCGTCAGGTCAACGAACGGACATCGGGTTGCTGATCAGTGCANAGCTTCCGGCTACACAAAGACCTGGTCANGGGACATTGTGC]

[+] EMBL AL695595             [AGAATCCCCGAGGTTATGTACCGTTTCTGGAGACGATCGCTTCGCCGGTGCTGCTGGTAAATGTGGACAACAGCCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTGGAGCGCGGCTGTGGCTGTCGGATCGGCGTGATTGGGGTCATCCTCAGCACGACCGATACGATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGGACGGGAAGCGGAACACCTTACAGCTCGGGTTGCGATATTATCGTCGTCCTGTCGCACTGTGGCATCGATGTTGGATCGTTCGATCGCGGCGNAATTGTTGGCCGCTGGTGGACCATCCATTGTGGATGAGGCCATTCGCACAGGTTCCTGTACACCGGGCGATCATCCGACCATTCCGATGAATNCCGGTGTTCCGAATTATCAAANGGGTCGTCAGGTCAACGAACGGACATCGGGTTGCTGATCAGTGCANAGCTTCCGGCTACACAAAGACCTGGTCANGGGACATTGTGC]


>consensus_3895#1 AGAATCCCCGAGGTTATGTACCGTTTCTGGAGACGATCGCTTCGCCGGTGCTGCTGGTAA ATGTGGACAACAGCCTGGAACCGGAATTCAACCGGTTTAACAAGAGTCTGGTGCTGGAGC GCGGCTGTGGCTGTCGGATCGGCGTGATTGGGGTCATCCTCAGCACGACCGATACGATCG CCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATCCGGACGGGAAGCGGAA CACCTTACAGCTCGGGTTGCGATATTATCGTCGTCCTGTCGCACTGTGGCATCGATGTTG GATCGTTCGATCGCGGCGNAATTGTTGGCCGCTGGTGGACCATCCATTGTGGATGAGGCC ATTCGCACAGGTTCCTGTACACCGGGCGATCATCCGACCATTCCGATGAATNCCGGTGTT CCGAATTATCAAANGGGTCGTCAGGTCAACGAACGGACATCGGGTTGCTGATCAGTGCAN AGCTTCCGGCTACACAAAGACCTGGTCANGGGACATTGTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3895#0      CCGGTGCGCACACGCAGAGAGCGCGCGCGTGCTCAAACTTCACAATGGTGCGGAGTTGGG 60
consensus_3895#1      ------------------------------------------------------------
                                                                                  

consensus_3895#0      GTTTCTTCCCACGTTTCGCGGTCATCTGC--TTGCTTGCCTCGTTCAGTGCAATCGGTGC 118
consensus_3895#1      --------AGAATCCCCGAGGTTATGTACCGTTTCTGGAGACGATCGCTTCG-CCGGTGC 51
                                *     ** *** ** * *  ** ** *   ** **  * *   ******

consensus_3895#0      TGCTGGGCAGCAGGAACTTTTCCCCCTGTCTATTGTGCACATTAACGACTTTCATGCCCG 178
consensus_3895#1      TGCTGGTAAATGTGGACAACAGCCTGGAACC-----GGAATTCAACCGGTTTAACAAGAG 106
                      ******  *    * **     **     *      * *  * ***   *** *     *

consensus_3895#0      CTTCGAGGAGGTGAACGAGGCGAGTGTCACGTGTGATGGGGCGGCCGGGGAGCGATGCAT 238
consensus_3895#1      TCT---GGTGCTGGA--GCGCGGCTGTGGC---TGTCGGATCGGCGTGATTGGGGT-CAT 157
                        *   ** * ** *    ***  ***  *   **  **  ****  *   * * * ***

consensus_3895#0      CGGTGGGTACGCCCG-CACGGTGACGGTCGTGAAGCGGCTGCTGGCCGAGCGACCGAACG 297
consensus_3895#1      CC-TCAGCACGACCGATACGATCGCCAACACGGGCGAGCTGATGTTTGAG-GACGAGGTC 215
                      *  *  * *** ***  *** *  *   *  *     **** **   *** ***      

consensus_3895#0      CAATCTACCTGAACGCGG---GCGACAACTTCCAGGGCACGCTGTGGTACAACATTCACC 354
consensus_3895#1      GAAACGATCCGGACGGGAAGCGGAACACCTTACAGCTCGGGTTGCGATATTATCGTCGTC 275
                       ** * * * * *** *    *  *** *** ***  *  * ** * **  *   **  *

consensus_3895#0      --GATGGAACGCAACGTCGGAGTTTCTGAACATGCTTCCGGCCGATGCGATGACGATCGG 412
consensus_3895#1      CTGTCGCACTGTGGCATCGATGTTGGATCGTTCGATCGCGGCGNAATTGTTGGCCGCTGG 335
                        *  * *  *   * ***  ***         * *  ****  *   * ** *    **

consensus_3895#0      CA-ACCATGAGTTCGATAATGGGGTGGAAGGTGTGGTACCGTTTCTGGAGAC-GATCGCG 470
consensus_3895#1      TGGACCATCCATT-GTGGATGAGGCCATTCGCACAG----GTTCCTGTACACCGGGCGAT 390
                         *****   ** *   *** **      *    *    *** *** * ** *  **  

consensus_3895#0      TCGCCGGTGCTGCTGGTAAATGTGGACAACAGTCTGGAACCGGAATTCAACCGGTTTAAC 530
consensus_3895#1      CATCCGACCATTCCGATGAATNCCGGT----GTTCCGAATTA----TCAAANGGGTCGTC 442
                         ***    * * * * ***   *      **   ***       ****  ** *   *

consensus_3895#0      AAGAGTCTGGTGCTAGAGCGCGGCGGGCGTCGGATCGGGGTGATTGGGGTCATCCTCAGC 590
consensus_3895#1      AG--GTC---AACGAACGGACATCGGGTTGCTGATCAGTGC-ANAGCTTCCGGCTACACA 496
                      *   ***     * *  *  *  ****   * **** * *  *  *    *  *  **  

consensus_3895#0      ACGACCGATACAATCGCCAACACGGGCGAGCTGATGTTTGAGGACGAGGTCGAAACGATC 650
consensus_3895#1      AAGACCTGGTCANGGGACATTGTGC----------------------------------- 521
                      * ****    **   * **    *                                    

consensus_3895#0      CGAACGGAAGCGGAA 665
consensus_3895#1      ---------------
                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)