These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence [AGAATCCCCGCGGTTTATAAACGAGCCGGTACACGTNTTGTCCCCCCCTTCAAATTGTGCGTGCTTTTGTGAAGGTGTGTGTTTTACGGGTGTGTTTGTGATTAAAGTTTCCTCTTCAAAAATTAAAGGTGATACGTGTAACTACACTCGATAACTACAGCTACCGGCACGAGTATCCTGTGTATCCTGAGGCATTGCAGAAGAAGCGAAACACTCCCATCCGTCCCCCATTTACCCACCGATCGTTCTTGGAGTTAAATTAACACGGATTAAGCAGCAGAACTGACGTACAAAAATGACCAACTAAACATCGACTCAACAAAAGGCCCCCGAAGCTGTACTGCACCGTACAGNTTCGACTTGGCTGGAAAAGGTTCACAANTTATTGGCCCANGGACGGAGNGCTGTCGCCGCAGCGCATTGAACGGACATGCCGGAGAAGAAAANGCCCCTTGCAAGGCCAGCTATACCCNCGCGAAGATGGGATTCGCCCAAAACATTCCCGCNTGCATACCGNCAAAGTTGACCGCAACGGGGACAGACAAACCGTTCCCTTGTTGGCAGCNCNCTTCTGCGNCACGAAACAACAGCTCCCTTCNCAANTACCCTGNGGAGGCNGCACCGCGCACCATTCGCTAGCGGNCGGCAAAGTCAACCCCTTGGACCCCAACTCCCNGGGGCACGGCGGTCTAATNNACCCAGCCACTTGGGTTTCCTTTCCACAAANCTTGTGACATTTCACACGATCCCCCNGAACNCTTGGGAAACGGGCCGANACAACCACTCTCGC] [+] EMBL AL695614 [AGAATCCCCGCGGTTTATAAACGAGCCGGTACACGTNTTGTCCCCCCCTTCAAATTGTGCGTGCTTTTGTGAAGGTGTGTGTTTTACGGGTGTGTTTGTGATTAAAGTTTCCTCTTCAAAAATTAAAGGTGATACGTGTAACTACACTCGATAACTACAGCTACCGGCACGAGTATCCTGTGTATCCTGAGGCATTGCAGAAGAAGCGAAACACTCCCATCCGTCCCCCATTTACCCACCGATCGTTCTTGGAGTTAAATTAACACGGATTAAGCAGCAGAACTGACGTACAAAAATGACCAACTAAACATCGACTCAACAAAAGGCCCCCGAAGCTGTACTGCACCGTACAGNTTCGACTTGGCTGGAAAAGGTTCACAANTTATTGGCCCANGGACGGAGNGCTGTCGCCGCAGCGCATTGAACGGACATGCCGGAGAAGAAAANGCCCCTTGCAAGGCCAGCTATACCCNCGCGAAGATGGGATTCGCCCAAAACATTCCCGCNTGCATACCGNCAAAGTTGACCGCAACGGGGACAGACAAACCGTTCCCTTGTTGGCAGCNCNCTTCTGCGNCACGAAACAACAGCTCCCTTCNCAANTACCCTGNGGAGGCNGCACCGCGCACCATTCGCTAGCGGNCGGCAAAGTCAACCCCTTGGACCCCAACTCCCNGGGGCACGGCGGTCTAATNNACCCAGCCACTTGGGTTTCCTTTCCACAAANCTTGTGACATTTCACACGATCCCCCNGAACNCTTGGGAAACGGGCCGANACAACCACTCTCGC] consensusID : consensus_3896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [GAATCGGCCGAGGATGATTCTATAATTAGCACTGGCGTNCGATTATGAATCTCACCCTGACCATACACGACGTCAGCGCGTAAACACAATCGAGCAATTTCATGCTGTAAATGGAGTGGCAAATAGCGAATTCAACACCACCACCACCAATACCACTAAACACGTGCCGGCAATGGAGAAAGTTATACCAGCCGATGACCAATAAAATCGAGCCTCAACAAAGCCCCCGAAGCGTACGCACCGTACAGCTTCGACCTGCCGGACAAGTTCAAAATTATGGCCCAGGACGAGCTGCGCGAGGATGACGACATGCGGGAGAACGCCCTGAAGCAGTTCCGCGAGTGGATCGCCAAAGCATCCGCGTGATCCGCAAGTGCCGCAACGGACGCACCGGTTCCTGTTTGCGCTTTCTGCGCACGAAAAAGTTCTCCATGCCCGGCGGCGACGGAGGATGCTGGAGAAGTACCTGACCATCCGGCAGGTCTATCCGCACTGGTTCTTCAAACTGGACATTAACGATCCCGACCTGGAGGCGATCATCGAACAGCGGGTATATCTGTTTGCGCTGCCCGGAGCGTGACGAGCAATGGGCGCAAGATCATCTTCTCCAACGCGGGCAAGGTTCGATACGGAGCCGGGTTCACGTCGGGCCAGCGTGATCCAAGATCCACTCGATN] [+] EMBL BX468574 [GAATCGGCCGAGGATGATTCTATAATTAGCACTGGCGTNCGATTATGAATCTCACCCTGACCATACACGACGTCAGCGCGTAAACACAATCGAGCAATTTCATGCTGTAAATGGAGTGGCAAATAGCGAATTCAACACCACCACCACCAATACCACTAAACACGTGCCGGCAATGGAGAAAGTTATACCAGCCGATGACCAATAAAATCGAGCCTCAACAAAGCCCCCGAAGCGTACGCACCGTACAGCTTCGACCTGCCGGACAAGTTCAAAATTATGGCCCAGGACGAGCTGCGCGAGGATGACGACATGCGGGAGAACGCCCTGAAGCAGTTCCGCGAGTGGATCGCCAAAGCATCCGCGTGATCCGCAAGTGCCGCAACGGACGCACCGGTTCCTGTTTGCGCTTTCTGCGCACGAAAAAGTTCTCCATGCCCGGCGGCGACGGAGGATGCTGGAGAAGTACCTGACCATCCGGCAGGTCTATCCGCACTGGTTCTTCAAACTGGACATTAACGATCCCGACCTGGAGGCGATCATCGAACAGCGGGTATATCTGTTTGCGCTGCCCGGAGCGTGACGAGCAATGGGCGCAAGATCATCTTCTCCAACGCGGGCAAGGTTCGATACGGAGCCGGGTTCACGTCGGGCCAGCGTGATCCAAGATCCACTCGATN] consensusID : consensus_3896#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CCGCCCACGCGTCCGCCAGCACGCACGGTCACAGTCTGCTTTGGTCCGTCTCGGAATTCGGAAGTGTGTTTCTGCACCCAACCCAATCATCAGAAGAAAGCCCTCCCGCCCCCCAAAACACCGTTCCCTTTCCTTTCGGGCATCCAACTCTCCCCTCTTGTCTTTCACGATCACACATTTCCTGGATCTTCCCGTTTCAAACGAGCCGGTACACGTTTTGTCCCCCCCTTCAAATTGTGATCGTGTAACTACACTCGATAACTACAGCACCGGCACGAGTATCCTGTGTATCCCGAGCATTGCAGAAGAAGCGAAACACTCCCATCCGCTCCCCCCATTTCCCACCGATCGTTTTGGAGTTAATTAACACGGATTAGCAGCAGAACTGACGTACAAAAATGACCAATAAAATCGACCTCAACAAAGCCCCCGAAGCGTACGCACCGTACAGCTTCGACCTGCCGGACAAGTTCAAAATTATGGCCCAGGACGAGCTGCGCGAGGATGACGACATGCGGGAGAACGCCCTGAAGCAGTTCCGCGAGTGGATCGCCAAACATCCGCTGATCCGCAAGTGCCGCACGGACGCACCGTT] [+] EMBL BM633248 [CCGCCCACGCGTCCGCCAGCACGCACGGTCACAGTCTGCTTTGGTCCGTCTCGGAATTCGGAAGTGTGTTTCTGCACCCAACCCAATCATCAGAAGAAAGCCCTCCCGCCCCCCAAAACACCGTTCCCTTTCCTTTCGGGCATCCAACTCTCCCCTCTTGTCTTTCACGATCACACATTTCCTGGATCTTCCCGTTTCAAACGAGCCGGTACACGTTTTGTCCCCCCCTTCAAATTGTGATCGTGTAACTACACTCGATAACTACAGCACCGGCACGAGTATCCTGTGTATCCCGAGCATTGCAGAAGAAGCGAAACACTCCCATCCGCTCCCCCCATTTCCCACCGATCGTTTTGGAGTTAATTAACACGGATTAGCAGCAGAACTGACGTACAAAAATGACCAATAAAATCGACCTCAACAAAGCCCCCGAAGCGTACGCACCGTACAGCTTCGACCTGCCGGACAAGTTCAAAATTATGGCCCAGGACGAGCTGCGCGAGGATGACGACATGCGGGAGAACGCCCTGAAGCAGTTCCGCGAGTGGATCGCCAAACATCCGCTGATCCGCAAGTGCCGCACGGACGCACCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3896#0 ------------------------------------------------------------ consensus_3896#2 CCGCCCACGCGTCCGCCAGCACGCACGGTCACAGTCTGCTTTGGTCCGTCTCGGAATTCG 60 consensus_3896#1 ------------------------------------------------------------ consensus_3896#0 ------------------------------------AGAATCCCCGCGGTTTATAAACGA 24 consensus_3896#2 GAAGTGTGTTTCTGCACCCAACCCAATCATCAGAAGAAAGCCCTCCCGCCCCCCAAAACA 120 consensus_3896#1 ------------------------------------------------------------ consensus_3896#0 GCCGGTACACGTNTTGTCCCCCCCTTCAAATTGTGCGTGCT-TTTGTGAAGGT-GTGTGT 82 consensus_3896#2 --CCGTTCCCTTTCCTTTCGGGCATCCAACTCTCCCCTCTTGTCTTTCACGATCACACAT 178 consensus_3896#1 ------------------------------------------------------------ consensus_3896#0 TTTACGGGTGTGTTTGT------------GATTAAAGTTTCCTCTTCAAAAATTAAAGGT 130 consensus_3896#2 TTCCTGGATCTTCCCGTTTCAAACGAGCCGGTACACGTTTTGTCCCCCCCTTCAAATTGT 238 consensus_3896#1 -----GAATCGGCCGAG------------GATGATTCTATAATTAGCACTGGCGTNCGAT 43 * * * * * * * * * consensus_3896#0 GATACGTGTAACTACACTCGATAACTACAGCTACCGGCACGAGTATCCTGTGTATCCTGA 190 consensus_3896#2 GAT-CGTGTAACTACACTCGATAACTACAGC-ACCGGCACGAGTATCCTGTGTATCCCGA 296 consensus_3896#1 TATGAATCTCACCCTGACCATACACGACGTCAGCGCGTAAACACAATCGAGCAATTTCAT 103 ** * * ** * ** ** * * * * * * ** consensus_3896#0 GGCATTGCAGAAGAAGCGAAACACTCCCATCCG-TCCCCCATTTACCCACCGATCGTTCT 249 consensus_3896#2 G-CATTGCAGAAGAAGCGAAACACTCCCATCCGCTCCCCCCATTTCCCACCGATCGTT-T 354 consensus_3896#1 G---CTGTAAATGGAGTGGCAAAT----AGCGAATTCAACA-----CCACC-ACCACCAA 150 * ** * * * ** * * * * * * * * ***** * * consensus_3896#0 TGGAGTTAAATTAACACGGATTAAGCAGCAGAACTGACGTACAAAAATGACCAACTAAAC 309 consensus_3896#2 TGGAGTTAA-TTAACACGGATTA-GCAGCAGAACTGACGTACAAAAATGACCAATAAAA- 411 consensus_3896#1 TACCACTAAACACGTGCCGGCAA--TGGAGAAAGTTATACCAGCCGATGACCAATAAAA- 207 * *** * * * * ** * * ******** *** consensus_3896#0 ATCGA-C-TCAACAAAAGGCCCCCGAAGCTGTACTGCACCGTACAGNTTCGACTTGGCTG 367 consensus_3896#2 -TCGA-CCTCAACAAA--GCCCCCGAAGC-GTAC-GCACCGTACAGCTTCGACCTGCC-- 463 consensus_3896#1 -TCGAGCCTCAACAAA--GCCCCCGAAGC-GTAC-GCACCGTACAGCTTCGACCTGCC-- 260 **** * ******** *********** **** *********** ****** ** * consensus_3896#0 GAAAAGGTTCACAANTTATTGGCCCANGGACGGAGNGCTGTCGCCGCAGCGCATTGAACG 427 consensus_3896#2 GGACAAGTTCA-AAATTAT-GGCCCAGGAC----GAGCTGC-------GCGAGGATGACG 510 consensus_3896#1 GGACAAGTTCA-AAATTAT-GGCCCAGGAC----GAGCTGC-------GCGAGGATGACG 307 * * * ***** ** **** ****** * * **** *** *** consensus_3896#0 GACATGCCGGAGAAGAAAANGCCCCTTGCAAGGCCAGCTATACCCNCGCGAA-GATGGGA 486 consensus_3896#2 -ACATGCGGGAG-----AACGCCCTGAAGCAGTTCCGCGAGTGGATCGCCAA-ACATCCG 563 consensus_3896#1 -ACATGCGGGAG-----AACGCCCTGAAGCAGTTCCGCGAGTGGATCGCCAAAGCATCCG 361 ****** **** ** **** ** * ** * *** ** consensus_3896#0 T-TCGCCCAAAACATTCCCG-CNTGCATACCG-NCAAAGTTGACCGCAACGGGGACAGAC 543 consensus_3896#2 C-TGATCCGCAAGTGCCGCA-CGGACGCACCG-TT------------------------- 595 consensus_3896#1 CGTGATCCGCAAGTGCCGCAACGGACGCACCGGTTCCTGTTTGCGCTTTCTGCGCACGAA 421 * ** ** * * * * **** consensus_3896#0 AAACCGTTCCCTTGTTGGCAGCNCNCTTCTGCGNCACGAAACAAC---AGCTCCCTTCNC 600 consensus_3896#2 ------------------------------------------------------------ consensus_3896#1 AAAGTTCTCCATGCCCGGCGGCGACGGAGGATGCTGGAGAAGTACCTGACCATCCGGCAG 481 consensus_3896#0 AANTACCCTGNGGAGGCNGCACCGCGCACCATTCGCTAGCGGNCGGCAAAGTCAACCCCT 660 consensus_3896#2 ------------------------------------------------------------ consensus_3896#1 GTCTATCCGCACTGGTTCTTCAAACTGGACATTAACGATCCCGACCTGGAGGCGATCATC 541 consensus_3896#0 TGGACCCCAACTCCCNGGGGCACGGCGGTCTAATNNACCCAGCCACTTGG-----GTTTC 715 consensus_3896#2 ------------------------------------------------------------ consensus_3896#1 GAACAGCGGGTATATCTGTTTGCGCTGCCCGGAGCGTGACGAGCAATGGGCGCAAGATCA 601 consensus_3896#0 CTTTCCACAAANCTTGTGACATTTCACACG-ATCCCCCNGAACNCTTGGGAAACGGGCCG 774 consensus_3896#2 ------------------------------------------------------------ consensus_3896#1 TCTTCTCCAACGCGGGCAAGGTTCGATACGGAGCCGGGTTCACGTCGGGCCAGCGTGATC 661 consensus_3896#0 ANACAACCACTCTCGC 790 consensus_3896#2 ---------------- consensus_3896#1 CAAGATCCACTCGATN 677 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||