These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence [CCGATTTCTCGGACCACGCTGGGCAGAACAGTTTCATTTTTTGTGCTAAAACAATGTATGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTTTTCCACGGATGGAGCTGTGCTGCACACGATCACCGTTGAGCAGAAAGCGCCTGCTAAGGATACGGATGCCGCTAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCTAACGTTGTAACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTGGCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGAGGACATTACCACGGCGAGGACGATCGTCAGCATGAAGTTCGTCCCAAAGCATGGCGTTCTGTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACCGCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTAGCGATGATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCGACTGCCACAATATAAAAATGTTTTTGTTTGGGGCACACGGAGTACGTGGGGAAGGGGATTGAGATCATTCCCAGCG] [+] EMBL BM595801 [CCGATTTCTCGGACCACGCTGGGCAGAACAGTTTCATTTTTTGTGCTAAAACAATGTATGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTTTTCCACGGATGGAGCTGTGCTGCACACGATCACCGTTGAGCAGAAAGCGCCTGCTAAGGATACGGATGCCGCTAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCTAACGTTGTAACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTGGCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGAGGACATTACCACGGCGAGGACGATCGTCAGCATGAAGTTCGTCCCAAAGCATGGCGTTCTGTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACCGCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTAGCGATGATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCGACTGCCACAATATAAAAATGTTTTTGTTTGGGGCACACGGAGTACGTGGGGAAGGGGATTGAGATCATTC ] [+] EMBL BM650968 [ ccGGCAGAATAGTTTAGGTTTTTGTGCTAAAAAAATGTATGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTTTTCCACGGATGGAGCTGTGCTGCACACGATCACCGTCGAGCAGAAAGCGCCTGTTAAGGATACGGATGCCGGCAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCCAACGTTGTAACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTGGCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGAGGACATTACCACGGCGAGGACGATCGTGAGCATGAAGTTTGTCCCAAAGCATGGCGTTCTGTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACCGCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTAGCGATGATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCGACTGCCACAATAT AGAATGTTTCTGTCTGGGGCACACGGAGTATGTGGG A GGAATTGAGATCATTCCCAGCG] consensusID : consensus_3901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAGGTTTTTGTGCTAAAAAAATGTATGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTTTTCCACGGATGGAGCTGTGCTGCACACGATCACCGTCGAGCAGAAAGCGCCTGTTAAGGATACGGATGCCGGCAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCCAACGTTGTAACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTGGCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGAGGACATTACCACGGCGAGGACGATCGTGAGCATGAAGTTTGTCCCAAAGCATGGCGTTCTGTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACCGCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTGAGCGATGATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCGACTGCCACAATATAGAATGTTTCTGTCTG] [+] EMBL BM585350 [CCGCCCACGCGTCCGCCCACGCGTCCGAGGTTTTTGTGCTAAAAAAATGTATGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTTTTCCACGGATGGAGCTGTGCTGCACACGATCACCGTCGAGCAGAAAGCGCCTGTTAAGGATACGGATGCCGGCAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCCAACGTTGTAACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTGGCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGAGGACATTACCACGGCGAGGACGATCGTGAGCATGAAGTTTGTCCCAAAGCATGGCGTTCTGTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACCGCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTGAGCGATGATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCGACTGCCACAATATAGAATGTTTCTGTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3901#0 CCGATTTCTCGGACCACGC--TGGGCAGAACAGTTTCATTTTTTGTGCTAAAACAATGTA 58 consensus_3901#1 ---------CCGCCCACGCGTCCGCCCACGCGTCCGAGGTTTTTGTGCTAAAAAAATGTA 51 * * ****** * * * ************** ****** consensus_3901#0 TGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTT 118 consensus_3901#1 TGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTT 111 ************************************************************ consensus_3901#0 TTCCACGGATGGAGCTGTGCTGCACACGATCACCGTTGAGCAGAAAGCGCCTGCTAAGGA 178 consensus_3901#1 TTCCACGGATGGAGCTGTGCTGCACACGATCACCGTCGAGCAGAAAGCGCCTGTTAAGGA 171 ************************************ **************** ****** consensus_3901#0 TACGGATGCCGCTAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCTAACGTTGT 238 consensus_3901#1 TACGGATGCCGGCAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCCAACGTTGT 231 *********** ************************************** ******** consensus_3901#0 AACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTG 298 consensus_3901#1 AACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTG 291 ************************************************************ consensus_3901#0 GCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGA 358 consensus_3901#1 GCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGA 351 ************************************************************ consensus_3901#0 GGACATTACCACGGCGAGGACGATCGTCAGCATGAAGTTCGTCCCAAAGCATGGCGTTCT 418 consensus_3901#1 GGACATTACCACGGCGAGGACGATCGTGAGCATGAAGTTTGTCCCAAAGCATGGCGTTCT 411 *************************** *********** ******************** consensus_3901#0 GTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACC 478 consensus_3901#1 GTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACC 471 ************************************************************ consensus_3901#0 GCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTT-AGCGATG 537 consensus_3901#1 GCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTGAGCGATG 531 **************************************************** ******* consensus_3901#0 ATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCG 597 consensus_3901#1 ATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCG 591 ************************************************************ consensus_3901#0 ACTGCCACAATATAAAAATGTTTTTGTTTGGGGCACACGGAGTACGTGGGGAAGGGGATT 657 consensus_3901#1 ACTGCCACAATATAGAA-TGTTTCTGTCTG------------------------------ 620 ************** ** ***** *** ** consensus_3901#0 GAGATCATTCCCAGCG 673 consensus_3901#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||