These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [TGGTTTCGCCGATGACGGTACGCCGGTCCAGCCCAGCCGTAGCAGCGGCCGACGGCCTACTGTACGTGGCTGGTGGTGATCAGCCCTGCGAGATCAACTTTTACCGGGCGCAAATTACAATCGCTTCGTTCGAGTGCTACAATCCCATCACGGACTAGTGGAAGGTGTGCCCGGATCTACCGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAACCCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAAAATTCGCCATCGCAAAACCAAAGATGCGCTTATAAAGCGCTGCGATTGAATAGCAAACCACTCGCGTGTGTGCTACCCCCGTGCAAACGCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATACGTATTTCTTCTTCTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTTACATTTGATCAACACTTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAAATGTTTTAAACATATAGATGTGCAACTAGATATATTATAGTGTGTAGTACCACCACCACCATATTAATCTGCGTACACGATCCCCAGCCCGATCCTTTT] [+] EMBL BX617619 [TGGTTTCGCCGATGACGGTACGCCGGTCCAGCCCAGCCGTAGCAGCGGCCGACGGCCTACTGTACGTGGCTGGTGGTGATCAGCCCTGCGAGATCAACTTTTACCGGGCGCAAATTACAATCGCTTCGTTCGAGTGCTACAATCCCATCACGGACTAGTGGAAGGTGTGCCCGGATCTACCGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAACCCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAAAATTCGCCATCGCAAAACCAAAGATGCGCTTATAAAGCGCTGCGATTGAATAGCAAACCACTCGCGTGTGTGCTACCCCCGTGCAAACGCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATACGTATTTCTTCTTCTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTTACATTTGATCAACACTTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAAATGTTTTAAACATATAGATGTGCAACTAGATATATTATAGTGTGTAGTACCACCACCACCATATTAATCTGCGTACACGATCCCCAGCCCGATCCTTTT] [+] EMBL BX615202 [ AAAAAAGGCACAAAAACAACCTCCTTTGGGGATTTATCTCTATTCCTCGGTCCAATCGGCGCTCCTAACATTCGCCATCGCAAAACCAAAGATGCGCTTATAAAGCGCTGCGATTGAATAGCAAACCACTCGCGTGTGTGCTACCCCCGTGCAAACCCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATACGTATTTCTTCTTCTCGTTTGTTTGATCGTTGTTTCTTTCCATGTTACATTTGATCATCAGTTTTTCGATCA ] consensusID : consensus_3903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TTGCCCCAGGGTATTCGAGTGCTACAATCCCATCACGACCAGTGGAAGGTGTGCCGGATCTACCGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAACCCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAACATTCGCCATCGCAAAACCAAAGATGCGCTTATAAAGCGCTGGATTGAATAGCAAACATTCGCGTGTGTGCTACCCGCGCAAAGCCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATACGTATTCTTCTACTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTAACATTTGATCAACAGTTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAA] [+] EMBL AL695720 [TTGCCCCAGGGTATTCGAGTGCTACAATCCCATCACGACCAGTGGAAGGTGTGCCGGATCTACCGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAACCCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAACATTCGCCATCGCAAAACCAAAGATGCGCTTATAAAGCGCTGGATTGAATAGCAAACATTCGCGTGTGTGCTACCCGCGCAAAGCCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATACGTATTCTTCTACTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTAACATTTGATCAACAGTTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3903#0 TGGTTTCGCCGATGACGGTACGCCGGTCCAGCCCAGCCGTAGCAGCGGCCGACGGCCTAC 60 consensus_3903#1 ------------------------------------------------------------ consensus_3903#0 TGTACGTGGCTGGTGGTGATCAGCCCTGCGAGATCAACTTTTACCGGGCGCAAATTACAA 120 consensus_3903#1 ------------------------------------------------------TTGCCC 6 ** * consensus_3903#0 TCGCTTCGTTCGAGTGCTACAATCCCATCACGGACTAGTGGAAGGTGTGCCCGGATCTAC 180 consensus_3903#1 CAGGGT-ATTCGAGTGCTACAATCCCATCACG-ACCAGTGGAAGGTGTGCC-GGATCTAC 63 * * ************************ ** *************** ******** consensus_3903#0 CGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAAC 240 consensus_3903#1 CGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAAC 123 ************************************************************ consensus_3903#0 CCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAAAATTCGCCATCG 300 consensus_3903#1 CCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAACATTCGCCATCG 183 ************************************************ *********** consensus_3903#0 CAAAACCAAAGATGCGCTTATAAAGCGCTGCGATTGAATAGCAAACCACTCGCGTGTGTG 360 consensus_3903#1 CAAAACCAAAGATGCGCTTATAAAGCGCTG-GATTGAATAGCAAAC-ATTCGCGTGTGTG 241 ****************************** *************** * *********** consensus_3903#0 CTACCCCCGTGCAAACGCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATAC 420 consensus_3903#1 CTACC--CGCGCAAAGCCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATAC 299 ***** ** ***** ******************************************* consensus_3903#0 GTATTTCTTCTTCTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTTACATTTGATCAACAC 480 consensus_3903#1 GTATT-CTTCTACTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTAACATTTGATCAACAG 358 ***** ***** ******************************** ************** consensus_3903#0 TTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAAATGTTTTAAACATAT 540 consensus_3903#1 TTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAA--------------- 403 ********************************************* consensus_3903#0 AGATGTGCAACTAGATATATTATAGTGTGTAGTACCACCACCACCATATTAATCTGCGTA 600 consensus_3903#1 ------------------------------------------------------------ consensus_3903#0 CACGATCCCCAGCCCGATCCTTTT 624 consensus_3903#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||