These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3906#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1046 fasta sequence [NCAGTATTGCAATATGATAAATAATACGAATCGCATTAACATGAGACATGATTATAAAGATACAAGAGATAAAAGAAAATAGGTAAAACTAGTTCACAATAGATTTTTTTCGATAGCATTTTTACACAGTACCAAAATTTAACAAGATCAAAAAAGGTTTACAATTACTCGCGCTAAGTAAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTNNAATGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCNAATCTTAATATTGAGACAGTATCCAAAGCAATCGTAAAATATGTATCAATGGAGCAACACCGTGAGAAAGAGAAGGAGGAAAGAGAGAGTAGATGTTTTCACCCTTTTGACGACAGTANNTCGCCGTCCCCCTCTTTGTCGTCGTCATCCCTTTCGTCATTAAATCGATATTCCCCGGAGGAGGGTGTAGGCGTGTTTAGATGTACGCACACACACCATTGATGCACCAGATCAACCGCGATCATCATTCCGTTTATGCGTCCCGTTCCGTGTTTCCCGACGCGTTCTAGAGTAGCTTATTGTTTTGCTTTGTTTTAAACGTTACACACGAGTGCGACAATTAGCGTATGCGCATCAGGGTGGATTGGGTGTAAGCAATATAGTTCAATATTGTTATTTCCTCATCACTCAGCGGTTTATGGTGTTTCCTAAGCACAATCGTGTAATCATTTCCTACCATTCATTATTATGTCGCGTGTACGCACCATTGGAACACAATAGGGATGTGGAGCGCAATCAAATGTCGCACAGCATTATTATCTGAATGTGATTTGTACTATATGTGGACAAACAGGACCGTGCACAGATTCAAAAAACACACAAATTTAGCCGTTGTCGTTCCGTTTTCCGTTAGT] [+] EMBL BX624382 [NCAGTATTGCAATATGATAAATAATACGAATCGCATTAACATGAGACATGATTATAAAGATACAAGAGATAAAAGAAAATAGGTAAAACTAGTTCACAATAGATTTTTTTCGATAGCATTTTTACACAGTACCAAAATTTAACAAGATCAAAAAAGGTTTACAATTACTCGCGCTAAGTAAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTNNAATGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCNAATCTTAATATTGAGACAGTATCCAAAGCAATCGTAAAATATGTATCAATGGAGCAACACCGTGAGAAAGAGAAGGAGGAAAGAGAGAGTAGATGTTTTCACCCTTTTGACGACAGTANNTCGC ] [+] EMBL BX615158 [ TCAATGGAGCAACACGGTGAGAAAGAGAGGAAGGAAAGAGAGAGTAGATGTTTTCACCCTTTTGACGACAGTAGGTCGCCGTCCCCCTCTTTGTCGTCGTCATCCCTTTCGTCATTAAATCGATATTCCCCGGAGGAGGGTGTAGGCGTGTTTAGATGTACGCACACACACCATTGATGCACCAGATCAACCGCGATCATCATTCCGTTTATGCGTCCCGTTCCGTGTTTCCCGACGCGTTCTAGAGTAGCTTATTGTTTTGCTTTGTTTTAAACGTTACACACGAGTGCGACAATTAGCGTATGCGCATCAGGGTGGATTGGGTGTAAGCAATATAGTTCAATATTGTTATTTCCTCATCACTCAGCGGTTTATGGTGTTTCCTAAGCACAATCGTGTAATCATTTCCTACCATTCATTATTATGTCGCGTGTACGCACCATTGGAACACAATAGGGATGTGGAGCGCAATCAAATGTCGCACAGCATTATTATCTGAATGTGATTTGTACTATATGTGGACAAACAGGACCGTGCACAGATTCAAAAAACACACAAATTTAGCCGTTGTCGTTCCGTTTTCCGTTAGT] consensusID : consensus_3906#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 894 fasta sequence [CCAGGCTTATTACAAGATAAAAAAGGTTTACATTACTCGCGCTAAGTAAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTTAAACTGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCAAATCTTAATATTGAGACAGTATCAAACAGCAATCGTAAAATATGTATCAATGGAGCAACACGGTGAGAAAGAGAGGANNGGACACACGAGAGAGTAGATGTNCTNTCACCCTTTTGACGACAGCTAGGTCGCCGCTCCCCCTCTTTGTCGCTCGCTCATCCCTTTCGCTCCATTAANACTCGACTATTCCCCCGGCAGCGAGCGGTGTAAGGACGTGTNAAAGATGTACCGCAACACACCACCATTGGATGCCACCAGCATCAACCGCGATCATCACTCTCCCGCTCACTGCNGTCCGCTTCCGCTGCTNCTCCCGGACGCCGCTTNCCTACCAGTTAGCCTTAATTTGTNCACGGCCTCNCCGCTCNTCTCAANACCGGTTCNNCCCCATCCCCGCCGGNNCGCTTNCCNCAACCCACCCTCTTACGCCCGCTANTTGCCGCCCACNTTCACCGGGCTGCGACTATAGGCGCTGCTACACGCCCCACCNANACNTCACGTTNCCCACCTACCTCCTGGTNCCTCTTCCCTTCCAATTCCCTCCNGCGGGCANACCTGGGCTGGCTCNCCCCTACCGCCACCATCACTCCGCTGGTTNACCTCCACATCTATCC] [+] EMBL AL695736 [CCAGGCTTATTACAAGATAAAAAAGGTTTACATTACTCGCGCTAAGTAAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTTAAACTGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCAAATCTTAATATTGAGACAGTATCAAACAGCAATCGTAAAATATGTATCAATGGAGCAACACGGTGAGAAAGAGAGGANNGGACACACGAGAGAGTAGATGTNCTNTCACCCTTTTGACGACAGCTAGGTCGCCGCTCCCCCTCTTTGTCGCTCGCTCATCCCTTTCGCTCCATTAANACTCGACTATTCCCCCGGCAGCGAGCGGTGTAAGGACGTGTNAAAGATGTACCGCAACACACCACCATTGGATGCCACCAGCATCAACCGCGATCATCACTCTCCCGCTCACTGCNGTCCGCTTCCGCTGCTNCTCCCGGACGCCGCTTNCCTACCAGTTAGCCTTAATTTGTNCACGGCCTCNCCGCTCNTCTCAANACCGGTTCNNCCCCATCCCCGCCGGNNCGCTTNCCNCAACCCACCCTCTTACGCCCGCTANTTGCCGCCCACNTTCACCGGGCTGCGACTATAGGCGCTGCTACACGCCCCACCNANACNTCACGTTNCCCACCTACCTCCTGGTNCCTCTTCCCTTCCAATTCCCTCCNGCGGGCANACCTGGGCTGGCTCNCCCCTACCGCCACCATCACTCCGCTGGTTNACCTCCACATCTATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3906#0 NCAGTATTGCAATATGATAAATAATACGAATCGCATTAACATGAGACATGATTATAAAGA 60 consensus_3906#1 ------------------------------------------------------------ consensus_3906#0 TACAAGAGATAAAAGAAAATAGGTAAAACTAGTTCACAATAGATTTTTTTCGATAGCATT 120 consensus_3906#1 ------------------------------------------------------------ consensus_3906#0 TTTACACAGTACCAAAATT-TAACAAGATCAAAAAAGGTTTACAATTACTCGCGCTAAGT 179 consensus_3906#1 -----------CCAGGCTTATTACAAGAT-AAAAAAGGTTTACA-TTACTCGCGCTAAGT 47 *** ** * ******* ************** *************** consensus_3906#0 AAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAA 239 consensus_3906#1 AAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAA 107 ************************************************************ consensus_3906#0 ACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATG 299 consensus_3906#1 ACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATG 167 ************************************************************ consensus_3906#0 AGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTNN 359 consensus_3906#1 AGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTTA 227 ********************************************************** consensus_3906#0 AA-TGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCNAATCTTA 418 consensus_3906#1 AACTGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCAAATCTTA 287 ** ************************************************* ******* consensus_3906#0 ATATTGAGACAGTATCCAA-AGCAATCGTAAAATATGTATCAATGGAGCAACACCGTGAG 477 consensus_3906#1 ATATTGAGACAGTATCAAACAGCAATCGTAAAATATGTATCAATGGAGCAACACGGTGAG 347 **************** ** ********************************** ***** consensus_3906#0 AAAGAGAAGGAGGAAA----GAGAGAGTAGATGTT--TTCACCCTTTTGACGACAG-TAN 530 consensus_3906#1 AAAGAGAGGANNGGACACACGAGAGAGTAGATGTNCTNTCACCCTTTTGACGACAGCTAG 407 ******* * * * ************** ****************** ** consensus_3906#0 NTCGCCG-TCCCCCTCTTTGTCG-TCG-TCATCCCTTTCGT--CATTAAA--TCGA-TAT 582 consensus_3906#1 GTCGCCGCTCCCCCTCTTTGTCGCTCGCTCATCCCTTTCGCTCCATTAANACTCGACTAT 467 ****** *************** *** ************ ****** **** *** consensus_3906#0 TCCCCGGA----GGAGGGTGTAGG--CGTGTTTA-GATGTAC-GCA-CACAC-ACCATTG 632 consensus_3906#1 TCCCCCGGCAGCGAGCGGTGTAAGGACGTGTNAAAGATGTACCGCAACACACCACCATTG 527 ***** * * ****** * ***** * ******* *** ***** ******* consensus_3906#0 -ATGC-ACCAG-ATCAACCGCGATCATCATTCCGTTTATGCGTCCCGTTCCGTGTTTCCC 689 consensus_3906#1 GATGCCACCAGCATCAACCGCGATCATCACTCT-CCCGCTCACTGCNGTCCGCTTCCGCT 586 **** ***** ***************** ** * * **** * * consensus_3906#0 GACGCGTTCTAGAGTAGCTTATTGTTTTGCTTTGTTTTAAACGTTACACACGAGTGCGAC 749 consensus_3906#1 GCTNCTCCCGGACGCCGCTTNCC-TACCAGTTAGCCTTAAT--TTGTNCACGGCCTCNCC 643 * * * * **** * ** * **** ** **** * * consensus_3906#0 AATTAGCGTATGCGCATCAGGGTGGATTGGGTGTAAGCAATATAGTTCAATATTGTTATT 809 consensus_3906#1 GCTCNTC---------TCAANACCGGTTCNNCCCCATC-------CCCGCCGGNNCGCTT 687 * * *** * ** * * * ** consensus_3906#0 TCCTCATCACTCAGCGGTTTATGGTGTTTCCTAAGCACAATCGTGTAATCATTTCCTACC 869 consensus_3906#1 NCCNCA--ACCCACCCTCTTACGCCCGCTANTTGCCGCCCACNTTCACCGGGCTGCGACT 745 ** ** ** ** * *** * * * * * * * * * * ** consensus_3906#0 ATTCATTATTATGTCGCGTGTACGCACCATTGGAACACAATAGGGATGTGGAGCGCAATC 929 consensus_3906#1 ATAGGCGCT---GCTACACGCCC-CACCNANACNTCACGTTNCCCACCTACCTCCTGGTN 801 ** * * * * * **** *** * * * * * consensus_3906#0 AAATGTCGCACAGCATTATTATCTGAATGT-GATTTGTACTATATGTGGACAAACAGGAC 988 consensus_3906#1 CCTCTTCCCTTCCAATTCCCTCCNGCGGGCANACCTGGGCTGGCTCNCCCCTACCGCCAC 861 ** * *** * * * * ** ** * * * * ** consensus_3906#0 CGTGCACAGATTCAAAAAACACACAAATTTAGCCGTTGTCGTTCCGTTTTCCGTTAGT 1046 consensus_3906#1 CAT-CACTCCGCTGGTTNACCTCCACATCTATCC------------------------ 894 * * *** ** ** ** ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||