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Anopheles gambiae
cluster # 3906 cluster # 3906       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3906#0 length = 1046 sequences # 2  
consensus_3906#1 length = 894 sequences # 1  

consensusID : consensus_3906#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1046
fasta sequence
                              [NCAGTATTGCAATATGATAAATAATACGAATCGCATTAACATGAGACATGATTATAAAGATACAAGAGATAAAAGAAAATAGGTAAAACTAGTTCACAATAGATTTTTTTCGATAGCATTTTTACACAGTACCAAAATTTAACAAGATCAAAAAAGGTTTACAATTACTCGCGCTAAGTAAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTNNAATGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCNAATCTTAATATTGAGACAGTATCCAAAGCAATCGTAAAATATGTATCAATGGAGCAACACCGTGAGAAAGAGAAGGAGGAAAGAGAGAGTAGATGTTTTCACCCTTTTGACGACAGTANNTCGCCGTCCCCCTCTTTGTCGTCGTCATCCCTTTCGTCATTAAATCGATATTCCCCGGAGGAGGGTGTAGGCGTGTTTAGATGTACGCACACACACCATTGATGCACCAGATCAACCGCGATCATCATTCCGTTTATGCGTCCCGTTCCGTGTTTCCCGACGCGTTCTAGAGTAGCTTATTGTTTTGCTTTGTTTTAAACGTTACACACGAGTGCGACAATTAGCGTATGCGCATCAGGGTGGATTGGGTGTAAGCAATATAGTTCAATATTGTTATTTCCTCATCACTCAGCGGTTTATGGTGTTTCCTAAGCACAATCGTGTAATCATTTCCTACCATTCATTATTATGTCGCGTGTACGCACCATTGGAACACAATAGGGATGTGGAGCGCAATCAAATGTCGCACAGCATTATTATCTGAATGTGATTTGTACTATATGTGGACAAACAGGACCGTGCACAGATTCAAAAAACACACAAATTTAGCCGTTGTCGTTCCGTTTTCCGTTAGT]

[+] EMBL BX624382             [NCAGTATTGCAATATGATAAATAATACGAATCGCATTAACATGAGACATGATTATAAAGATACAAGAGATAAAAGAAAATAGGTAAAACTAGTTCACAATAGATTTTTTTCGATAGCATTTTTACACAGTACCAAAATTTAACAAGATCAAAAAAGGTTTACAATTACTCGCGCTAAGTAAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTNNAATGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCNAATCTTAATATTGAGACAGTATCCAAAGCAATCGTAAAATATGTATCAATGGAGCAACACCGTGAGAAAGAGAAGGAGGAAAGAGAGAGTAGATGTTTTCACCCTTTTGACGACAGTANNTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX615158             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCAATGGAGCAACACGGTGAGAAAGAGAGGAAGGAAAGAGAGAGTAGATGTTTTCACCCTTTTGACGACAGTAGGTCGCCGTCCCCCTCTTTGTCGTCGTCATCCCTTTCGTCATTAAATCGATATTCCCCGGAGGAGGGTGTAGGCGTGTTTAGATGTACGCACACACACCATTGATGCACCAGATCAACCGCGATCATCATTCCGTTTATGCGTCCCGTTCCGTGTTTCCCGACGCGTTCTAGAGTAGCTTATTGTTTTGCTTTGTTTTAAACGTTACACACGAGTGCGACAATTAGCGTATGCGCATCAGGGTGGATTGGGTGTAAGCAATATAGTTCAATATTGTTATTTCCTCATCACTCAGCGGTTTATGGTGTTTCCTAAGCACAATCGTGTAATCATTTCCTACCATTCATTATTATGTCGCGTGTACGCACCATTGGAACACAATAGGGATGTGGAGCGCAATCAAATGTCGCACAGCATTATTATCTGAATGTGATTTGTACTATATGTGGACAAACAGGACCGTGCACAGATTCAAAAAACACACAAATTTAGCCGTTGTCGTTCCGTTTTCCGTTAGT]


>consensus_3906#0 NCAGTATTGCAATATGATAAATAATACGAATCGCATTAACATGAGACATGATTATAAAGA TACAAGAGATAAAAGAAAATAGGTAAAACTAGTTCACAATAGATTTTTTTCGATAGCATT TTTACACAGTACCAAAATTTAACAAGATCAAAAAAGGTTTACAATTACTCGCGCTAAGTA AAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAA CGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGA GATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTNNA ATGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCNAATCTTAAT ATTGAGACAGTATCCAAAGCAATCGTAAAATATGTATCAATGGAGCAACACCGTGAGAAA GAGAAGGAGGAAAGAGAGAGTAGATGTTTTCACCCTTTTGACGACAGTANNTCGCCGTCC CCCTCTTTGTCGTCGTCATCCCTTTCGTCATTAAATCGATATTCCCCGGAGGAGGGTGTA GGCGTGTTTAGATGTACGCACACACACCATTGATGCACCAGATCAACCGCGATCATCATT CCGTTTATGCGTCCCGTTCCGTGTTTCCCGACGCGTTCTAGAGTAGCTTATTGTTTTGCT TTGTTTTAAACGTTACACACGAGTGCGACAATTAGCGTATGCGCATCAGGGTGGATTGGG TGTAAGCAATATAGTTCAATATTGTTATTTCCTCATCACTCAGCGGTTTATGGTGTTTCC TAAGCACAATCGTGTAATCATTTCCTACCATTCATTATTATGTCGCGTGTACGCACCATT GGAACACAATAGGGATGTGGAGCGCAATCAAATGTCGCACAGCATTATTATCTGAATGTG ATTTGTACTATATGTGGACAAACAGGACCGTGCACAGATTCAAAAAACACACAAATTTAG CCGTTGTCGTTCCGTTTTCCGTTAGT



consensusID : consensus_3906#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 894
fasta sequence
                              [CCAGGCTTATTACAAGATAAAAAAGGTTTACATTACTCGCGCTAAGTAAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTTAAACTGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCAAATCTTAATATTGAGACAGTATCAAACAGCAATCGTAAAATATGTATCAATGGAGCAACACGGTGAGAAAGAGAGGANNGGACACACGAGAGAGTAGATGTNCTNTCACCCTTTTGACGACAGCTAGGTCGCCGCTCCCCCTCTTTGTCGCTCGCTCATCCCTTTCGCTCCATTAANACTCGACTATTCCCCCGGCAGCGAGCGGTGTAAGGACGTGTNAAAGATGTACCGCAACACACCACCATTGGATGCCACCAGCATCAACCGCGATCATCACTCTCCCGCTCACTGCNGTCCGCTTCCGCTGCTNCTCCCGGACGCCGCTTNCCTACCAGTTAGCCTTAATTTGTNCACGGCCTCNCCGCTCNTCTCAANACCGGTTCNNCCCCATCCCCGCCGGNNCGCTTNCCNCAACCCACCCTCTTACGCCCGCTANTTGCCGCCCACNTTCACCGGGCTGCGACTATAGGCGCTGCTACACGCCCCACCNANACNTCACGTTNCCCACCTACCTCCTGGTNCCTCTTCCCTTCCAATTCCCTCCNGCGGGCANACCTGGGCTGGCTCNCCCCTACCGCCACCATCACTCCGCTGGTTNACCTCCACATCTATCC]

[+] EMBL AL695736             [CCAGGCTTATTACAAGATAAAAAAGGTTTACATTACTCGCGCTAAGTAAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTTAAACTGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCAAATCTTAATATTGAGACAGTATCAAACAGCAATCGTAAAATATGTATCAATGGAGCAACACGGTGAGAAAGAGAGGANNGGACACACGAGAGAGTAGATGTNCTNTCACCCTTTTGACGACAGCTAGGTCGCCGCTCCCCCTCTTTGTCGCTCGCTCATCCCTTTCGCTCCATTAANACTCGACTATTCCCCCGGCAGCGAGCGGTGTAAGGACGTGTNAAAGATGTACCGCAACACACCACCATTGGATGCCACCAGCATCAACCGCGATCATCACTCTCCCGCTCACTGCNGTCCGCTTCCGCTGCTNCTCCCGGACGCCGCTTNCCTACCAGTTAGCCTTAATTTGTNCACGGCCTCNCCGCTCNTCTCAANACCGGTTCNNCCCCATCCCCGCCGGNNCGCTTNCCNCAACCCACCCTCTTACGCCCGCTANTTGCCGCCCACNTTCACCGGGCTGCGACTATAGGCGCTGCTACACGCCCCACCNANACNTCACGTTNCCCACCTACCTCCTGGTNCCTCTTCCCTTCCAATTCCCTCCNGCGGGCANACCTGGGCTGGCTCNCCCCTACCGCCACCATCACTCCGCTGGTTNACCTCCACATCTATCC]


>consensus_3906#1 CCAGGCTTATTACAAGATAAAAAAGGTTTACATTACTCGCGCTAAGTAAAAACAGGCCCA GTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATA TGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAG ATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTTAAACTGCAAAAGGG TACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCAAATCTTAATATTGAGACAGT ATCAAACAGCAATCGTAAAATATGTATCAATGGAGCAACACGGTGAGAAAGAGAGGANNG GACACACGAGAGAGTAGATGTNCTNTCACCCTTTTGACGACAGCTAGGTCGCCGCTCCCC CTCTTTGTCGCTCGCTCATCCCTTTCGCTCCATTAANACTCGACTATTCCCCCGGCAGCG AGCGGTGTAAGGACGTGTNAAAGATGTACCGCAACACACCACCATTGGATGCCACCAGCA TCAACCGCGATCATCACTCTCCCGCTCACTGCNGTCCGCTTCCGCTGCTNCTCCCGGACG CCGCTTNCCTACCAGTTAGCCTTAATTTGTNCACGGCCTCNCCGCTCNTCTCAANACCGG TTCNNCCCCATCCCCGCCGGNNCGCTTNCCNCAACCCACCCTCTTACGCCCGCTANTTGC CGCCCACNTTCACCGGGCTGCGACTATAGGCGCTGCTACACGCCCCACCNANACNTCACG TTNCCCACCTACCTCCTGGTNCCTCTTCCCTTCCAATTCCCTCCNGCGGGCANACCTGGG CTGGCTCNCCCCTACCGCCACCATCACTCCGCTGGTTNACCTCCACATCTATCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3906#0      NCAGTATTGCAATATGATAAATAATACGAATCGCATTAACATGAGACATGATTATAAAGA 60
consensus_3906#1      ------------------------------------------------------------
                                                                                  

consensus_3906#0      TACAAGAGATAAAAGAAAATAGGTAAAACTAGTTCACAATAGATTTTTTTCGATAGCATT 120
consensus_3906#1      ------------------------------------------------------------
                                                                                  

consensus_3906#0      TTTACACAGTACCAAAATT-TAACAAGATCAAAAAAGGTTTACAATTACTCGCGCTAAGT 179
consensus_3906#1      -----------CCAGGCTTATTACAAGAT-AAAAAAGGTTTACA-TTACTCGCGCTAAGT 47
                                 ***   ** * ******* ************** ***************

consensus_3906#0      AAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAA 239
consensus_3906#1      AAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAA 107
                      ************************************************************

consensus_3906#0      ACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATG 299
consensus_3906#1      ACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATG 167
                      ************************************************************

consensus_3906#0      AGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTNN 359
consensus_3906#1      AGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTTA 227
                      **********************************************************  

consensus_3906#0      AA-TGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCNAATCTTA 418
consensus_3906#1      AACTGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCAAATCTTA 287
                      ** ************************************************* *******

consensus_3906#0      ATATTGAGACAGTATCCAA-AGCAATCGTAAAATATGTATCAATGGAGCAACACCGTGAG 477
consensus_3906#1      ATATTGAGACAGTATCAAACAGCAATCGTAAAATATGTATCAATGGAGCAACACGGTGAG 347
                      **************** ** ********************************** *****

consensus_3906#0      AAAGAGAAGGAGGAAA----GAGAGAGTAGATGTT--TTCACCCTTTTGACGACAG-TAN 530
consensus_3906#1      AAAGAGAGGANNGGACACACGAGAGAGTAGATGTNCTNTCACCCTTTTGACGACAGCTAG 407
                      ******* *   * *     **************    ****************** ** 

consensus_3906#0      NTCGCCG-TCCCCCTCTTTGTCG-TCG-TCATCCCTTTCGT--CATTAAA--TCGA-TAT 582
consensus_3906#1      GTCGCCGCTCCCCCTCTTTGTCGCTCGCTCATCCCTTTCGCTCCATTAANACTCGACTAT 467
                       ****** *************** *** ************   ******   **** ***

consensus_3906#0      TCCCCGGA----GGAGGGTGTAGG--CGTGTTTA-GATGTAC-GCA-CACAC-ACCATTG 632
consensus_3906#1      TCCCCCGGCAGCGAGCGGTGTAAGGACGTGTNAAAGATGTACCGCAACACACCACCATTG 527
                      ***** *     *   ****** *  *****  * ******* *** ***** *******

consensus_3906#0      -ATGC-ACCAG-ATCAACCGCGATCATCATTCCGTTTATGCGTCCCGTTCCGTGTTTCCC 689
consensus_3906#1      GATGCCACCAGCATCAACCGCGATCATCACTCT-CCCGCTCACTGCNGTCCGCTTCCGCT 586
                       **** ***** ***************** **        *    *  ****  *   * 

consensus_3906#0      GACGCGTTCTAGAGTAGCTTATTGTTTTGCTTTGTTTTAAACGTTACACACGAGTGCGAC 749
consensus_3906#1      GCTNCTCCCGGACGCCGCTTNCC-TACCAGTTAGCCTTAAT--TTGTNCACGGCCTCNCC 643
                      *   *   *    *  ****    *     ** *  ****   **   ****    *  *

consensus_3906#0      AATTAGCGTATGCGCATCAGGGTGGATTGGGTGTAAGCAATATAGTTCAATATTGTTATT 809
consensus_3906#1      GCTCNTC---------TCAANACCGGTTCNNCCCCATC-------CCCGCCGGNNCGCTT 687
                        *   *         ***     * **       * *         *          **

consensus_3906#0      TCCTCATCACTCAGCGGTTTATGGTGTTTCCTAAGCACAATCGTGTAATCATTTCCTACC 869
consensus_3906#1      NCCNCA--ACCCACCCTCTTACGCCCGCTANTTGCCGCCCACNTTCACCGGGCTGCGACT 745
                       ** **  ** ** *   *** *     *  *   * *   * *  *      * * ** 

consensus_3906#0      ATTCATTATTATGTCGCGTGTACGCACCATTGGAACACAATAGGGATGTGGAGCGCAATC 929
consensus_3906#1      ATAGGCGCT---GCTACACGCCC-CACCNANACNTCACGTTNCCCACCTACCTCCTGGTN 801
                      **      *   *   *  *  * ****       ***  *    *  *    *    * 

consensus_3906#0      AAATGTCGCACAGCATTATTATCTGAATGT-GATTTGTACTATATGTGGACAAACAGGAC 988
consensus_3906#1      CCTCTTCCCTTCCAATTCCCTCCNGCGGGCANACCTGGGCTGGCTCNCCCCTACCGCCAC 861
                           ** *     ***     * *   *   *  **  **   *     * * *   **

consensus_3906#0      CGTGCACAGATTCAAAAAACACACAAATTTAGCCGTTGTCGTTCCGTTTTCCGTTAGT 1046
consensus_3906#1      CAT-CACTCCGCTGGTTNACCTCCACATCTATCC------------------------ 894
                      * * ***           **   ** ** ** **                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)