These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [CCGCCCACGCGTCCGCGACAGGCTGCAATGAAATGACGAAATAATTGCTCCAACCATAATCTCACTTTCACACACACATACACACATTCACAAACACGTACACATGCGTACAGATGGACACGCACACTAGATGTACGGATTGAACAACGCTTTACGCGGGTTCGCCAACTTGACCGCGTGTGCGACGACGGTGGTGGTGGTGGCGGTCCGCTGCTGCAGCCCGATGGCAAGCAAAGCTGACTGTAGACTGGCCCGCTCGATTGGCGCATACTGTTAGAAACCATCCTCTCCCTACCCTTTCCCTGGTTAATCCTCCCCGGAAAGCCCCGGCCGAGCGGTGTTTTGATGCGAAAGGCAGGCCAAAGTTATCTGTGTGACGTTGCAAAACAAAAATCACGCTGCCCAAGCAATTGATCGCCATATTTCAGCCCCCGTCTCTGCTTGCACGGAAACGGACTCGTGAGCACACGTGTGTATGTGTGTATGCGCGTGAGTGAGCGAGAGAGAGAGAGAACGACGACTGTGCATTTAACGGTAACCCGTCGCGCGTCCTGTGTGTGTGAGTGCGGTCGATAAACAGTGGGCTGGAAGTGCGTGTGTGTGCGTGTGCGTATCGCGGTCAACACTCACACACGGTGTCAAAACGGCTTCGC] [+] EMBL BM614778 [CCGCCCACGCGTCCGCGACAGGCTGCAATGAAATGACGAAATAATTGCTCCAACCATAATCTCACTTTCACACACACATACACACATTCACAAACACGTACACATGCGTACAGATGGACACGCACACTAGATGTACGGATTGAACAACGCTTTACGCGGGTTCGCCAACTTGACCGCGTGTGCGACGACGGTGGTGGTGGTGGCGGTCCGCTGCTGCAGCCCGATGGCAAGCAAAGCTGACTGTAGACTGGCCCGCTCGATTGGCGCATACTGTTAGAAACCATCCTCTCCCTACCCTTTCCCTGGTTAATCCTCCCCGGAAAGCCCCGGCCGAGCGGTGTTTTGATGCGAAAGGCAGGCCAAAGTTATCTGTGTGACGTTGCAAAACAAAAATCACGCTGCCCAAGCAATTGATCGCCATATTTCAGCCCCCGTCTCTGCTTGCACGGAAACGGACTCGTGAGCACACGTGTGTATGTGTGTATGCGCGTGAGTGAGCGAGAGAGAGAGAGAACGACGACTGTGCATTTAACGGTAACCCGTCGCGCGTCCTGTGTGTGTGAGTGCGGTCGATAAACAGTGGGCTGGAAGTGCGTGTGTGTGCGTGTGCGTATCGCGGTCAACACTCACACACGGTGTCAAAACGGCTTCGC] consensusID : consensus_3910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [CAGGCGGCACTGGGACGATCCAACCCGCATGCTATACTGACCTTGGTTGTGAGGTCGGCCATTACGGAGTGAAAAACATATTTGTGGAGTGCATTTTTCTACACCAAAATAATACCATCTAACTCACATACCACCAGCTGGTTTCGGTTGCCTTGCCTGCCCGAACGCACTGCCCAACGTTTCGGATAGTTTTCCAGCGCAGCAACGGCGGCCCAGCACGTGCACGACACGATTTTCACAACCGGAGGCCCACACAGGCTGCAGAAGCCAAAGCCAGAATCGTCCCCCAACCAGCGGAAGGGTCTAGAGAGGCGAGCGGAAGAGAAAGAGAGAGAGCGAGAGGGCAGAGCGCAAAGCAAAACCGACACGACGTAAGAAGGGCCAGCACCCCGACTATCTGGACCTCGTGTTGTCTCGTCCTCCCGACTGTTCCGATTCCGTCTGGCCGCTATCGGTGTGGCCGCTCTGCGTGGTCGAATGGCGTCGCGGAGTAATACCTGGCGTGACGACAGGACATGCGTACAGATGGACACGCACACTAGATGTACGGATTGAACAACGCTTTACGCGGGTTCGCCAACTTGACCGCGTGTGCGACGACGGTGGTGGTGGTGGCGGTCCGCTGCTGCAGCCCGACGG] [-] EMBL BM611936 [CAGGCGGCACTGGGACGATCCAACCCGCATGCTATACTGACCTTGGTTGTGAGGTCGGCCATTACGGAGTGAAAAACATATTTGTGGAGTGCATTTTTCTACACCAAAATAATACCATCTAACTCACATACCACCAGCTGGTTTCGGTTGCCTTGCCTGCCCGAACGCACTGCCCAACGTTTCGGATAGTTTTCCAGCGCAGCAACGGCGGCCCAGCACGTGCACGACACGATTTTCACAACCGGAGGCCCACACAGGCTGCAGAAGCCAAAGCCAGAATCGTCCCCCAACCAGCGGAAGGGTCTAGAGAGGCGAGCGGAAGAGAAAGAGAGAGAGCGAGAGGGCAGAGCGCAAAGCAAAACCGACACGACGTAAGAAGGGCCAGCACCCCGACTATCTGGACCTCGTGTTGTCTCGTCCTCCCGACTGTTCCGATTCCGTCTGGCCGCTATCGGTGTGGCCGCTCTGCGTGGTCGAATGGCGTCGCGGAGTAATACCTGGCGTGACGACAGGACATGCGTACAGATGGACACGCACACTAGATGTACGGATTGAACAACGCTTTACGCGGGTTCGCCAACTTGACCGCGTGTGCGACGACGGTGGTGGTGGTGGCGGTCCGCTGCTGCAGCCCGACGG] consensusID : consensus_3910#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [CCGCCCACGCGTCCGCGGAGTGAAAAACATATTTGTGGAGTGCATTTTTCTACACCAAAATAATACCATCTAACTCACATACCACCAGCTGGTTTCGGTTGCCTTGCCTGCCCGAACGCACTGCCCAACGTTTCGGATAGTTTTCCAGCGCAGCAACGGCGGCCCAGCACGTGCACGACACGATTTTCACAACCGGAGGCCCACACAGGCTGCAGAAGCCAAAGCCAGAATCGTCCCCCAACCAGCGGAAGGGTCTAGAGAGGCGAGCGGAAGAGAAAGAGAGAGAGCGAGAGGGCAGAGCGCAAAGCAAAACCGACACGACGTAAGAAGGGCCAGCACCCCGACTATCTGGACCTCGTGTTGTCTCGTCCTCCCGACTGTTCCGATTCCGTCTGGCCGCTATCGGTGTGGCCGCTCTGCGTGGTCGAATGGCGTCGCGGAGTAATACCTGGCGTGACGACAGGCTGCAATGAAATGACGAAATAATTGCTCCAACCATAATCTCACTTTCACACACACATACACACATTCACAAACACGTACACATGACGTACAGATGGACACGCA] [+] EMBL BM582814 [CCGCCCACGCGTCCGCGGAGTGAAAAACATATTTGTGGAGTGCATTTTTCTACACCAAAATAATACCATCTAACTCACATACCACCAGCTGGTTTCGGTTGCCTTGCCTGCCCGAACGCACTGCCCAACGTTTCGGATAGTTTTCCAGCGCAGCAACGGCGGCCCAGCACGTGCACGACACGATTTTCACAACCGGAGGCCCACACAGGCTGCAGAAGCCAAAGCCAGAATCGTCCCCCAACCAGCGGAAGGGTCTAGAGAGGCGAGCGGAAGAGAAAGAGAGAGAGCGAGAGGGCAGAGCGCAAAGCAAAACCGACACGACGTAAGAAGGGCCAGCACCCCGACTATCTGGACCTCGTGTTGTCTCGTCCTCCCGACTGTTCCGATTCCGTCTGGCCGCTATCGGTGTGGCCGCTCTGCGTGGTCGAATGGCGTCGCGGAGTAATACCTGGCGTGACGACAGGCTGCAATGAAATGACGAAATAATTGCTCCAACCATAATCTCACTTTCACACACACATACACACATTCACAAACACGTACACATGACGTACAGATGGACACGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3910#1 -----CAGGCGGCACTGGGACGATCCAACCCGC--ATGCTATACTGACCTTGGTTGTGAG 53 consensus_3910#2 --------------------------------------------------------CCGC 4 consensus_3910#0 CCGCCCACGCGTCCGCGACAGGCTGCAATGAAATGACGAAATAATTGCTCCAACCATAAT 60 consensus_3910#1 GTCGGCCATTACGGAGTGAAAAACATATTTGTGGA---GTGCATTTTTCTACACCAAAAT 110 consensus_3910#2 CCACGCGTCCGCGGAGTGAAAAACATATTTGTGGA---GTGCATTTTTCTACACCAAAAT 61 consensus_3910#0 CTC-ACTTTCACACACACATACACACATTCACAAACACGTACACATGCGTACAGATGGAC 119 * * * * * *** *** * ** ** * **** * consensus_3910#1 AATACCATCTAACTCACATACCACCAGCTGGTTTCGGTTGCCTTGCCTGCCCGAACGCAC 170 consensus_3910#2 AATACCATCTAACTCACATACCACCAGCTGGTTTCGGTTGCCTTGCCTGCCCGAACGCAC 121 consensus_3910#0 ACGCACACTAGATGTACGGATTGAACAACGCTTTACGCGGGTTCGCCAACTTGACCGCG- 178 * ** * ** * * *** * * * *** * ** *** consensus_3910#1 TGCCCAACGTTTCGGATAGTTTTCCAGCGCAGCAACGGCGGCCCAGCA-CGTGCACGACA 229 consensus_3910#2 TGCCCAACGTTTCGGATAGTTTTCCAGCGCAGCAACGGCGGCCCAGCA-CGTGCACGACA 180 consensus_3910#0 TGTGCGACGACGGTGGTGGTGGTGGCGGTCCGCTGCTGCAGCCCGATGGCAAGCAAAGCT 238 ** * *** * * ** * * * ** * ** **** * *** * consensus_3910#1 CGATTTTCAC-AACCGGA--GGCCCACACAGGCTGCAGAAGCCAAAGCCAGAATCGTCCC 286 consensus_3910#2 CGATTTTCAC-AACCGGA--GGCCCACACAGGCTGCAGAAGCCAAAGCCAGAATCGTCCC 237 consensus_3910#0 GACTGTAGACTGGCCCGCTCGATTGGCGCATACTGTTAGAAACCATCCTCTCCCTACCCT 298 * * ** ** * * * ** *** * * * * ** consensus_3910#1 CCAACCAGCGGAAGGGTCTAGAGAGGCGAGCGGAAGAGAAAGAGAGAGAGCGAGAGGGCA 346 consensus_3910#2 CCAACCAGCGGAAGGGTCTAGAGAGGCGAGCGGAAGAGAAAGAGAGAGAGCGAGAGGGCA 297 consensus_3910#0 TTCCCTGGTTAATCCTCCCCGGAAAGCCC-CGGCCGAGCGGTGTTTTGATGCGAAAGGCA 357 * * * * * * ** *** *** ** * **** consensus_3910#1 GAGCGCAAA-GCAAAACCGACACGACGTAAGAAGGGCCA-GCACCCCGACTATCTGGACC 404 consensus_3910#2 GAGCGCAAA-GCAAAACCGACACGACGTAAGAAGGGCCA-GCACCCCGACTATCTGGACC 355 consensus_3910#0 GGCCAAAGTTATCTGTGTGACGTTGCAAAACAAAAATCACGCTGCCCAAGCAATTGATCG 417 * * * *** * ** ** ** ** *** * * ** * consensus_3910#1 TCGTGTTGTCTCGTCC--TCCCGACTGTTCCGATTCCGTCTGGCCGCTATCGGTGTGGCC 462 consensus_3910#2 TCGTGTTGTCTCGTCC--TCCCGACTGTTCCGATTCCGTCTGGCCGCTATCGGTGTGGCC 413 consensus_3910#0 CCATATTTCAGCCCCCGTCTCTGCTTGCACGGAAACGGACTCGTGAGCACACGTGTGTAT 477 * * ** * ** * * ** * ** * * ** * * ***** consensus_3910#1 GCTCTGCGTGGTCGAATGGCGTCGCGGAGTAATACCTGGCGTGACGACAGGACAT--GCG 520 consensus_3910#2 GCTCTGCGTGGTCGAATGGCGTCGCGGAGTAATACCTGGCGTGACGACAGGCTGC--AAT 471 consensus_3910#0 G---TGTGTATGCGCGTGA-GTGAGCGAGAGAGAGAGAGAACGACGACTGTGCATTTAAC 533 * ** ** ** ** ** *** * * * ****** * consensus_3910#1 TACAGATGGACACGCACACTAGATGTACGGAT-TGAACAACGCTTTACG---CGGGTTCG 576 consensus_3910#2 GAAATGACGAAATAATTGCTCCAACCATAATC-TCACTTTCACAC-ACA---CATACACA 526 consensus_3910#0 GGTAACCCGTCGCGCGTCCTGTGTGTGTGAGTGCGGTCGATAAACAGTGGGCTGGAAGTG 593 * * ** consensus_3910#1 CCAACTTGACCGCGTGTGCGACGACGGTGGTGGTGGTGGCGGTCCGCTGCTGCAGCCCGA 636 consensus_3910#2 CATTCACAAACACGTACAC-ATGACG-TACAGATGGACACGCA----------------- 567 consensus_3910#0 CGTGTGTGTGCGTGTGCGT-ATCGCGGTCAACACTCACACACGGTGTCAAAACGGCTTCG 652 * * ** * ** * * consensus_3910#1 CGG 639 consensus_3910#2 --- consensus_3910#0 C-- 653 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||