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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1112 fasta sequence
[CGAGGTTTAGCAGGCGTTTTGCTGCTGCTGTCATAGCGGGGTGTNAGGGATTTCAAGTCTATTCATGAAGTGAAGTCGTTCATATTGACTGGATGCGTGTTCTAGCTGTCCATTTTTTCCTTCCTCTCGCTAGAATTCCTGTGCCAGTAAAATCACCATCGTCCATCGCTTCCCCACGCCCCATCGCAGTGCATGCCACAGATACAGGAATGGAGCTGGATAATATATATCTGAACAAGCTGCGATCGTAGGCTGCCACGGGCAGCGAGGGCGGACCTGGAACCACTATGCGTTCACTCGAGAGCACCTGGGGCGAGCGCAAAGATACTGCTGCACAGATNAATCGTGTTCAGGCCGCTGTAACAACACGGCCCCTCAGCTATCCTGTCCGGAGATCGACCAGAGGTGGCTGGCCAGAGAGACGGCACCATATCCGCGCCTGGGACGCGGNCCTGGCAAACGATATACCATGANAGAANACCAGGCTGGGNCAAGTCTGCGCACCGNNGGGGCGGGTGCGATCGGGGTTTCCAGCCTAGCCGCGTGNCCGNGTGANTCNCCCCATTTTCGCTGTTTGGCNGCANCTGGCTGGGTGCTGGNCCCCGCCGCTATAGCCGGTCGCCGGTTGCGGGTNCGGCNNCGCTTNCTGGCTGCGCGCGTCCCCCGCTTCGCCCNCTCCCGTCCCGCGGCTGCGCTGTCGCNCGCTCCCGTCGCCGCGGCCCTCCTCCCNGCCCCTGNNGGNGCCCNACCNACCCATGCAAGCACACGCCNCGNGAGGAACACCCAACAGGNGTACCCAGCGCACGNGANGGCCTGNGCACGGGCANTCGCCCATCACNCACGGGCCGCCNNGGGNCCCCGNCCCTNCCACGCGCCGCCCGAGANAACCAAGGCNACCGCACAGGNACGTCCGGCGGCAATCANNGCCGCGACNACCGAAGACGGGGCNCGAACCNAGAACNATCGANAGCCGNCACAAAAACGGGGGGGGCAGCANCACGGTGANGANNAAACNGACNGCCCCGGAAAGCANGACANGNCGNCNNGGAGCNCGAGCAGGGGGCCGACCACGNGCCAGCACACGNGGAGGAAAGACGCGCGCCCACNCCCTG]
[+] EMBL AL696022 [CGAGGTTTAGCAGGCGTTTTGCTGCTGCTGTCATAGCGGGGTGTNAGGGATTTCAAGTCTATTCATGAAGTGAAGTCGTTCATATTGACTGGATGCGTGTTCTAGCTGTCCATTTTTTCCTTCCTCTCGCTAGAATTCCTGTGCCAGTAAAATCACCATCGTCCATCGCTTCCCCACGCCCCATCGCAGTGCATGCCACAGATACAGGAATGGAGCTGGATAATATATATCTGAACAAGCTGCGATCGTAGGCTGCCACGGGCAGCGAGGGCGGACCTGGAACCACTATGCGTTCACTCGAGAGCACCTGGGGCGAGCGCAAAGATACTGCTGCACAGATNAATCGTGTTCAGGCCGCTGTAACAACACGGCCCCTCAGCTATCCTGTCCGGAGATCGACCAGAGGTGGCTGGCCAGAGAGACGGCACCATATCCGCGCCTGGGACGCGGNCCTGGCAAACGATATACCATGANAGAANACCAGGCTGGGNCAAGTCTGCGCACCGNNGGGGCGGGTGCGATCGGGGTTTCCAGCCTAGCCGCGTGNCCGNGTGANTCNCCCCATTTTCGCTGTTTGGCNGCANCTGGCTGGGTGCTGGNCCCCGCCGCTATAGCCGGTCGCCGGTTGCGGGTNCGGCNNCGCTTNCTGGCTGCGCGCGTCCCCCGCTTCGCCCNCTCCCGTCCCGCGGCTGCGCTGTCGCNCGCTCCCGTCGCCGCGGCCCTCCTCCCNGCCCCTGNNGGNGCCCNACCNACCCATGCAAGCACACGCCNCGNGAGGAACACCCAACAGGNGTACCCAGCGCACGNGANGGCCTGNGCACGGGCANTCGCCCATCACNCACGGGCCGCCNNGGGNCCCCGNCCCTNCCACGCGCCGCCCGAGANAACCAAGGCNACCGCACAGGNACGTCCGGCGGCAATCANNGCCGCGACNACCGAAGACGGGGCNCGAACCNAGAACNATCGANAGCCGNCACAAAAACGGGGGGGGCAGCANCACGGTGANGANNAAACNGACNGCCCCGGAAAGCANGACANGNCGNCNNGGAGCNCGAGCAGGGGGCCGACCACGNGCCAGCACACGNGGAGGAAAGACGCGCGCCCACNCCCTG]
consensusID : consensus_3912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CCGGAAGAAAACACCACCCCAAAAAGCTCGCCCGTTCCACCCCCAAACCGCACCAGACCTGTTTGCTAGGACGGGCAAGTTCAACCCGATAAATAGGAAACGCTAAAGAAGGGCACGCAAACGCGAAAAACGGTGGCGAAGGAGGGTAAAGTTGTTAAACAAGAAAGTGGGAAAAACAAGTGCGCGTCGCTCGGGTCTGCAGTACGTTTTGTACCGTTGCGTCTACTCGTACGCAAAGCAAAGCAAAGAAGGGGGAAACGGTACAAATAGAAGAATTCTTGTGCCAGTAAAATCACCATCGTCCATCGCTTCCCCACGCCCCATCGTAGTGCATGCCACAGATACAGGAATGGAGCTGGATAATATATATCTGAACAAGCTGCCGATCGTAGCTGCCACGGGCAGCGAGGGCGGCACCTGGAACCACTATGCGTTCATCGAGAGCACCTGGGGCGAGCGCAAGATACTGCTGAAGATAATCGTGTTCAGCCCGCTGTACAACACGCCCCTCAGCTTCCTGTCCGAGATCGACCACGAGGTGCTGCAGCAGACGGCCATTCGGCTGGAGCGGCCCTGGAACGATTTCCTGCACGAGACCAAACTGGCACTCTGCACCGAGGGCGGCGCGAACGGGTTTCAGCTACGCGGTCGAGGAGAACAATTTCGTGTGGCGCAAGGTGGTGGGGC]
[+] EMBL BM603294 [CCGGAAGAAAACACCACCCCAAAAAGCTCGCCCGTTCCACCCCCAAACCGCACCAGACCTGTTTGCTAGGACGGGCAAGTTCAACCCGATAAATAGGAAACGCTAAAGAAGGGCACGCAAACGCGAAAAACGGTGGCGAAGGAGGGTAAAGTTGTTAAACAAGAAAGTGGGAAAAACAAGTGCGCGTCGCTCGGGTCTGCAGTACGTTTTGTACCGTTGCGTCTACTCGTACGCAAAGCAAAGCAAAGAAGGGGGAAACGGTACAAATAGAAGAATTCTTGTGCCAGTAAAATCACCATCGTCCATCGCTTCCCCACGCCCCATCGTAGTGCATGCCACAGATACAGGAATGGAGCTGGATAATATATATCTGAACAAGCTGCCGATCGTAGCTGCCACGGGCAGCGAGGGCGGCACCTGGAACCACTATGCGTTCATCGAGAGCACCTGGGGCGAGCGCAAGATACTGCTGAAGATAATCGTGTTCAGCCCGCTGTACAACACGCCCCTCAGCTTCCTGTCCGAGATCGACCACGAGGTGCTGCAGCAGACGGCCATTCGGCTGGAGCGGCCCTGGAACGATTTCCTGCACGAGACCAAACTGGCACTCTGCACCGAGGGCGGCGCGAACGGGTTTCAGCTACGCGGTCGAGGAGAACAATTTCGTGTGGCGCAAGGTGGTGGGGC]
consensusID : consensus_3912#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CGTGTCTGTGTCATTTTTTCTTCTCTCGCTAGAATTCTGTGCCAGTAAAATACATCGTCCATCGCTTCCCACGCCCCATCGCAGTGCATGCCACAGATACAGGAATGGAGCTGGATAATATATATCTGAACAAGCTGCGATCGCTAGCTGGCACGAGGACAGCGAGGGCGGCGACCCTGGCAGACCACTATGCGGTTCACTCGCACGAGCACCCCTGGAGAGGAGAGACGCAAGAATACATGGCTGCAACGCACTACACTCCGCTGTANCANGCCCCGGACCTGNATAACAAAACCAAACGGGCGCCCACATCAGACCATATNCCCTTGCATACNGGAAACGCAACGTTCGGNNACCCCACACACAATCCGCGNNGCCAATGGCAAAGAGCACAAGANAAAACGGGGCACCCACATNCTCCGACGCCCNTTGGTGCAACGNCCGGCGCAGCACCACTTGGCGGAAANACCGGGAACTTTNAATCCCCATTGGCTCANAACCGGATANGAAAACCCCCAAACGNGACCCCTNGGGGACACAAACCCATTCCCGTGGGCCAAACCCCGTGACACACANCNGGAGCGCGTNAGGCTAGGCCACGGCAAACACCCGGGCGCGCGCATTATNCCAAAGGCNCCATTAAACCGAGCCCGGNGTATCCGGNGCAATGGTGGGCGAGTGGGAANA]
[+] EMBL AL695800 [CGTGTCTGTGTCATTTTTTCTTCTCTCGCTAGAATTCTGTGCCAGTAAAATACATCGTCCATCGCTTCCCACGCCCCATCGCAGTGCATGCCACAGATACAGGAATGGAGCTGGATAATATATATCTGAACAAGCTGCGATCGCTAGCTGGCACGAGGACAGCGAGGGCGGCGACCCTGGCAGACCACTATGCGGTTCACTCGCACGAGCACCCCTGGAGAGGAGAGACGCAAGAATACATGGCTGCAACGCACTACACTCCGCTGTANCANGCCCCGGACCTGNATAACAAAACCAAACGGGCGCCCACATCAGACCATATNCCCTTGCATACNGGAAACGCAACGTTCGGNNACCCCACACACAATCCGCGNNGCCAATGGCAAAGAGCACAAGANAAAACGGGGCACCCACATNCTCCGACGCCCNTTGGTGCAACGNCCGGCGCAGCACCACTTGGCGGAAANACCGGGAACTTTNAATCCCCATTGGCTCANAACCGGATANGAAAACCCCCAAACGNGACCCCTNGGGGACACAAACCCATTCCCGTGGGCCAAACCCCGTGACACACANCNGGAGCGCGTNAGGCTAGGCCACGGCAAACACCCGGGCGCGCGCATTATNCCAAAGGCNCCATTAAACCGAGCCCGGNGTATCCGGNGCAATGGTGGGCGAGTGGGAANA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3912#0 ------------------------------------------------------------
consensus_3912#1 CCGGAAGAAAACACCACCCCAAAAAGCTCGCCCGTTCCACCCCCAAACCGCACCAGACCT 60
consensus_3912#2 ------------------------------------------------------------
consensus_3912#0 ------------------------------------------------------------
consensus_3912#1 GTTTGCTAGGACGGGCAAGTTCAACCCGATAAATAGGAAACGCTAAAGAAGGGCACGCAA 120
consensus_3912#2 ------------------------------------------------------------
consensus_3912#0 ---CGAGGTTTAGCAG-GCGTTTTGCTGCTGCTGTCATAGCGGGGTGTNAGGGATTTCAA 56
consensus_3912#1 ACGCGAAAAACGGTGGCGAAGGAGGGTAAAGTTGTTA-AACAAGAAAGTGGGAAAAACAA 179
consensus_3912#2 ------------------------------------------------------------
consensus_3912#0 GTCTAT-TCATGAAGTGAAGTCGTTCATATTGACTGGATGCGTGTTCTAGCTGTCCATTT 115
consensus_3912#1 GTGCGCGTCGCTCGGGTCTGCAGTACGTTTTGTACCGTTGCGTCTACTCGTACGCAAAGC 239
consensus_3912#2 ----------------------------------------CGTGTCTGTGT----CATTT 16
*** * * *
consensus_3912#0 TTTCCT----------------TCCTCTCGCTAGAATTCCTGTGCCAGTAAAATCACCAT 159
consensus_3912#1 AAAGCAAAGAAGGGGGAAACGGTACAAATAGAAGAATTCTTGTGCCAGTAAAATCACCAT 299
consensus_3912#2 TTTCTT------------------CTCTCGCTAGAATTC-TGTGCCAGTAAAATA--CAT 55
* ******* ************** ***
consensus_3912#0 CGTCCATCGCTTCCCCACGCCCCATCGCAGTGCATGCCACAGATACAGGAATGGAGCTGG 219
consensus_3912#1 CGTCCATCGCTTCCCCACGCCCCATCGTAGTGCATGCCACAGATACAGGAATGGAGCTGG 359
consensus_3912#2 CGTCCATCGCTTCCC-ACGCCCCATCGCAGTGCATGCCACAGATACAGGAATGGAGCTGG 114
*************** *********** ********************************
consensus_3912#0 ATAATATATATCTGAACAAGCTGC-GATCGTAGGCTGCCACGGG--CAGCGAGGGCGG-A 275
consensus_3912#1 ATAATATATATCTGAACAAGCTGCCGATCGTAG-CTGCCACGGG--CAGCGAGGGCGGCA 416
consensus_3912#2 ATAATATATATCTGAACAAGCTGC-GATCGCTAGCTGGCACGAGGACAGCGAGGGCGGCG 173
************************ ***** *** **** * ************
consensus_3912#0 --CCTGG--AACCACTATGCG-TTCACTCGA--GAGCACCTGGGGCGAGCGCAAAGATAC 328
consensus_3912#1 --CCTGG--AACCACTATGCG-TTCA-TCGA--GAGCACCTGGGGCGAGCGCAA-GATAC 467
consensus_3912#2 ACCCTGGCAGACCACTATGCGGTTCACTCGCACGAGCACCCCTGGAGAGGAGAGACGCAA 233
***** *********** **** *** ******* ** *** * *
consensus_3912#0 TGCTGCACAGATNAATCGTGTT-CAGGCCGCTGTAACAA--CACGGCCCCTCA--GCTAT 383
consensus_3912#1 TGCTG---AAGATAATCGTGTT-CAGCCCGCTGTA-CAA--CACG-CCCCTCA--GCT-T 516
consensus_3912#2 GAATACATGGCTGCAACGCACTACACTCCGCTGTANCANGCCCCGGACCTGNATAACAAA 293
* * ** * ** ******** ** * ** ** * *
consensus_3912#0 CCTGTCCGG------AGATC-GACCAGAGGTGGCTGGCCAGAGAGACGGCACCATATCCG 436
consensus_3912#1 CCTGTCCG-------AGATC-GACCACGAGGTGCTG--CAGC-AGACGGC----CATTCG 561
consensus_3912#2 ACCAAACGGGCGCCCACATCAGACCATATNCCCTTGCATACNGGAAACGCAACGTTCGGN 353
* ** * *** ***** ** * * **
consensus_3912#0 CGCCTGGGACGCGGNCCTGGCAAACGATATACCATGANAGAANACCAGGCTGGGNCAAGT 496
consensus_3912#1 --GCTGGA--GCGGCCCTGG--AACGATTTCCT---GCACGAGACCAAACTGGCAC---- 608
consensus_3912#2 NACCCCACACACAATCCGCGNNGCCAATGGCAAAGAGCACAAGANAAAAC-GGGGCACCC 412
* * ** * * ** * * * * * ** *
consensus_3912#0 CTGCGCACCGNNGGGGCGGGTGCGATCGGGGTTTCCAGCCTAGCCGCGTGNCCGNGTGAN 556
consensus_3912#1 -TCTGCACCGAGGGCG---GCGCGAACGGGTTTC-------AGCTACGCGGTCGAGGAGA 657
consensus_3912#2 ACATNCTCCGACGCCC---NTTGGTGCAACGNCCGGCGCAGCACCACTTGGCGGAAANAC 469
* *** * * * * * * *
consensus_3912#0 TCNCCCCATTTTCGCTGTTTGGCNGCANCTGGCTGGGTGCTGGNCCCCGCCGCTATAGCC 616
consensus_3912#1 ACA----ATTTC----GTGTGGCGCAAGGTGGTGGGGC---------------------- 687
consensus_3912#2 CGGG--AACTTTNAATCCCCATTGGCTCANAACCGGATANGAAAACCCCCAAACGNGACC 527
* ** **
consensus_3912#0 GGTCGCCGGTTGCGGGTNCGGCNNCGCTTNCTGGCTGCGCGCGTCCCCCGCTTCGCCCNC 676
consensus_3912#1 ------------------------------------------------------------
consensus_3912#2 CCTNG---------GGGACACAAACCCATTCCCGTGGGCCAAACCCCGTGACACACANCN 578
consensus_3912#0 TCCCGTCCCGCGGCTGCGCTGTCGCNCGCTCCCGTCGCCGCGGCCCTCCTCCCNGCCCCT 736
consensus_3912#1 ------------------------------------------------------------
consensus_3912#2 GGAGCGCGTNAGGCTAGGCCACGGCAAACACCCGGGCGCGCGCATTATNCCAAAGGCNCC 638
consensus_3912#0 GNNGGNGCCCNACCNACCCATGCAAGCACACGCCNCGNGAGGAACACCCAACAGGNGTAC 796
consensus_3912#1 ------------------------------------------------------------
consensus_3912#2 ATTAAACCGAGCCCGGNGTATCCGGNGCAATGGTGGGCGAGTGGGAANA----------- 687
consensus_3912#0 CCAGCGCACGNGANGGCCTGNGCACGGGCANTCGCCCATCACNCACGGGCCGCCNNGGGN 856
consensus_3912#1 ------------------------------------------------------------
consensus_3912#2 ------------------------------------------------------------
consensus_3912#0 CCCCGNCCCTNCCACGCGCCGCCCGAGANAACCAAGGCNACCGCACAGGNACGTCCGGCG 916
consensus_3912#1 ------------------------------------------------------------
consensus_3912#2 ------------------------------------------------------------
consensus_3912#0 GCAATCANNGCCGCGACNACCGAAGACGGGGCNCGAACCNAGAACNATCGANAGCCGNCA 976
consensus_3912#1 ------------------------------------------------------------
consensus_3912#2 ------------------------------------------------------------
consensus_3912#0 CAAAAACGGGGGGGGCAGCANCACGGTGANGANNAAACNGACNGCCCCGGAAAGCANGAC 1036
consensus_3912#1 ------------------------------------------------------------
consensus_3912#2 ------------------------------------------------------------
consensus_3912#0 ANGNCGNCNNGGAGCNCGAGCAGGGGGCCGACCACGNGCCAGCACACGNGGAGGAAAGAC 1096
consensus_3912#1 ------------------------------------------------------------
consensus_3912#2 ------------------------------------------------------------
consensus_3912#0 GCGCGCCCACNCCCTG 1112
consensus_3912#1 ----------------
consensus_3912#2 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||