These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGATAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAAGACGGGTACGGTTGTGCATTTACTTGGCTGTGTTTTTTAAGACGTTTCTGGTGGTTCGAGGCTAACAGTGGCTTGTGCTAGTGTACTTTTTTTGTATATCTGCTAGTTTCAGTGTGTGTGTGCGCGGGGGAGGTGTTGTTAATTTTCGGCAATTCGGGAATCTAAATAAAAGCGAAGCAATCAGACCGAACGGTACAGTGCGAGATGGTGAACACACTTTAAGAAGCAATTGAACCGATGTGTTTGAATTCTTTAAATTTCCTCTTACGAGTGTTTGTCTTTGAAAGTGTGAATTAAGTTTTTAAAAAACCCCTAGGAAATATTGTGCAACATAACCTTTCGATCGGATCGATGCTCACTCGAACGACAAACTCCAATCGAACGCACATGTCAATGCCGGTGCCATCGTCGAAAAATGTCTGTGGTACTGTATTTTAAACAATTTTCGATCACCAACCACCTAAAAAAAACACGTTACTGGACGACCGATTGGATACGACCGAAAGGATGCCCCAATGTAACAGACCGTGAAGTCCGTAGTGGCTTTAAGCGTTGTTTTTCTTGTGGGACTCTTGTTGTCTATCGAAGCGCCTGCCGATATAGCAGCAAATAACAA] [+] EMBL BM604988 [CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGATAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAAGACGGGTACGGTTGTGCATTTACTTGGCTGTGTTTTTTAAGACGTTTCTGGTGGTTCGAGGCTAACAGTGGCTTGTGCTAGTGTACTTTTTTTGTATATCTGCTAGTTTCAGTGTGTGTGTGCGCGGGGGAGGTGTTGTTAATTTTCGGCAATTCGGGAATCTAAATAAAAGCGAAGCAATCAGACCGAACGGTACAGTGCGAGATGGTGAACACACTTTAAGAAGCAATTGAACCGATGTGTTTGAATTCTTTAAATTTCCTCTTACGAGTGTTTGTCTTTGAAAGTGTGAATTAAGTTTTTAAAAAACCCCTAGGAAATATTGTGCAACATAACCTTTCGATCGGATCGATGCTCACTCGAACGACAAACTCCAATCGAACGCACATGTCAATGCCGGTGCCATCGTCGAAAAATGTCTGTGGTACTGTATTTTAAACAATTTTCGATCACCAACCACCTAAAAAAAACACGTTACTGGACGACCGATTGGATACGACCGAAAGGATGCCCCAATGTAACAGACCGTGAAGTCCGTAGTGGCTTTAAGCGTTGTTTTTCTTGTGGGACTCTTGTTGTCTATCGAAGCGCCTGCCGATATAGCAGCAAATAACAA] consensusID : consensus_3915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGATAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAGGACGGGTCGTTATCAGTGCGTCTCTTATGTGACCCGACAGTGACGGTATCAAAGTAGCGTGGAAAAAGACCCAAACTGAAAAGTGGTTCGAAATAGTGCCTAGCTTGCAGCGTTAAGAATGTGACCGGTCCGATGTAAAAGCGCTTGGAGCGAGAACGAAACGCAACAAATCAACGCTATATTAAGCAACATCTCGGGAACGTCACGCCACAACCGGTGATCTTCCCTAGCCAATTCGTTTTAGAATCTCCCTGTAGCTTCTTACCGCACCACGAGATATAGAGCAACCTGCACGAAATAAGTCTGCACCAAGCAAAAAAAAAAACAACTACATATCAACCATGCCGGCTTACGCTGGGTTCGACAGTTTTGGAACGTCCCGCCGGACGGC] [+] EMBL BM636963 [CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGATAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAGGACGGGTCGTTATCAGTGCGTCTCTTATGTGACCCGACAGTGACGGTATCAAAGTAGCGTGGAAAAAGACCCAAACTGAAAAGTGGTTCGAAATAGTGCCTAGCTTGCAGCGTTAAGAATGTGACCGGTCCGATGTAAAAGCGCTTGGAGCGAGAACGAAACGCAACAAATCAACGCTATATTAAGCAACATCTCGGGAACGTCACGCCACAACCGGTGATCTTCCCTAGCCAATTCGTTTTAGAATCTCCCTGTAGCTTCTTACCGCACCACGAGATATAGAGCAACCTGCACGAAATAAGTCTGCACCAAGCAAAAAAAAAAACAACTACATATCAACCATGCCGGCTTACGCTGGGTTCGACAGTTTTGGAACGTCCCGCCGGACGGC] consensusID : consensus_3915#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [CCAGGTTTTAGACACACGTGCGCGCTGGCGGTCGGTGGAAAAGGTCGTTATCAGTGCGTCTCTTATGTGACCCGACAGTGACGGTATNAACAGTAGTGTGGAAAAAGACCCAAACTGAAAAGTGGTCCGAAATAGTGCCTTGCAGGCGTTAACGAATGTTGACCGGTCCGGTGTGCAACTGGTGCTTGGAGCGATGATAGACGACNTGCTATGAAATCAGACGCGATACGCAAGCAATCATCTCTATACACAGTCACAGNTCTCGGCGACGTCTACTCCACTAACGGTGATCGTTCCCTAGACTACATCCG] [+] EMBL AL695837 [CCAGGTTTTAGACACACGTGCGCGCTGGCGGTCGGTGGAAAAGGTCGTTATCAGTGCGTCTCTTATGTGACCCGACAGTGACGGTATNAACAGTAGTGTGGAAAAAGACCCAAACTGAAAAGTGGTCCGAAATAGTGCCTTGCAGGCGTTAACGAATGTTGACCGGTCCGGTGTGCAACTGGTGCTTGGAGCGATGATAGACGACNTGCTATGAAATCAGACGCGATACGCAAGCAATCATCTCTATACACAGTCACAGNTCTCGGCGACGTCTACTCCACTAACGGTGATCGTTCCCTAGACTACATCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3915#1 CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGA 60 consensus_3915#2 ------------------------------------------------------------ consensus_3915#0 CCGCGCGTGCAGACACACGTGCGCGCCTGGCGGTCGGTGGAAAAGGTTTGAACCAGTCGA 60 consensus_3915#1 TAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAGGACGGGT-CG--- 116 consensus_3915#2 -------CCAGGTTTTAGACACAC-GTGCGCGCTGGCGGTCG-GTGGAAAAGGT-CG--- 47 consensus_3915#0 TAGCAACGCATCCCGCAGTGCTGCTGCGGGCTCTGACGCTGAAGCAAGACGGGTACGGTT 120 ** ** * * * ** *** ** * * * *** ** consensus_3915#1 ------TTATCAGTGCGTCTCTTATGTGACCCGAC-AGTGA--CGGTATCAA-AGTAGC- 165 consensus_3915#2 ------TTATCAGTGCGTCTCTTATGTGACCCGAC-AGTGA--CGGTATNAACAGTAGT- 97 consensus_3915#0 GTGCATTTACTTGGCTGTGTTTTTTAAGACGTTTCTGGTGGTTCGAGGCTAACAGTGGCT 180 *** * ** * ** * *** * *** ** ** *** * consensus_3915#1 -GTGGAAAAAGACCCAAACTGAAAAGTGGTTCGAAATAGTGCCT---AGCTTGC----AG 217 consensus_3915#2 -GTGGAAAAAGACCCAAACTGAAAAGTGGTCCGAAATAGTGCCT---TGCA-------GG 146 consensus_3915#0 TGTGCTAGTGTACTTTTTTTGTATATCTGCTAGTTTCAGTGTGTGTGTGCGCGGGGGAGG 240 *** * ** ** * * * * **** * ** * consensus_3915#1 CGTTAA-GAATGT-GACCGGTCCGATGTAAAA---GCGCTTGGAGCGA-------GAACG 265 consensus_3915#2 CGTTAACGAATGTTGACCGGTCCGGTGTGCAACTGGTGCTTGGAGCGATGA---TAGACG 203 consensus_3915#0 TGTTGTTAATTTTCGGCAATTCGGGAATCTAAAT-AAAAGCGAAGCAATCAGACCGAACG 299 *** * * * * * ** * * ** * *** * *** consensus_3915#1 AAACGCAAC-AAATCA-ACGCTATAT-TAAGCAA-CATCTCGGGAACGTCACGCCACAAC 321 consensus_3915#2 ACNTGCTATGAAATCAGACGCGATACGCAAGCAATCATCTCT---ATACACAGTCACAGN 260 consensus_3915#0 GTACAGTGCGAGATGGTGAACACACTTTAAGAAGCAATTGAACCGATGTGTT-TGAATTC 358 * ** * *** * ** * * consensus_3915#1 CGGTGATCTTCCCTAGCCAAT---TCGTTTTAGAATCTCCCTGTAGCTTCTTACCGCACC 378 consensus_3915#2 TCTCGGCGACGTCTACTCCAC---TAACGGTG--ATCGTTCCCTAGACTACATCCG---- 311 consensus_3915#0 TTTAAATTTCCTCTTACGAGTGTTTGTCTTTGAAAGTGTGAATTAAGTTTTTAAAAAACC 418 ** * * * ** * consensus_3915#1 AC---GAGATATAGAGCAACCTGCACG---AAATAAGTCTGCACCAAGCAAAAAAAAAAA 432 consensus_3915#2 ------------------------------------------------------------ consensus_3915#0 CCTAGGAAATATTGTGCAACATAACCTTTCGATCGGATCGATGCTCACTCGAACGACAAA 478 consensus_3915#1 CAACTACATATCAACCATGCCG--GCTTACGCTGGGTTCGACAGTTTTGGAACGTCCCGC 490 consensus_3915#2 ------------------------------------------------------------ consensus_3915#0 CTCCAATCGAACGCACATGTCAATGCCGGTGCCATCGTCGAAAAATGTCTGTGGTACTGT 538 consensus_3915#1 CGGACGGC---------------------------------------------------- 498 consensus_3915#2 ------------------------------------------------------------ consensus_3915#0 ATTTTAAACAATTTTCGATCACCAACCACCTAAAAAAAACACGTTACTGGACGACCGATT 598 consensus_3915#1 ------------------------------------------------------------ consensus_3915#2 ------------------------------------------------------------ consensus_3915#0 GGATACGACCGAAAGGATGCCCCAATGTAACAGACCGTGAAGTCCGTAGTGGCTTTAAGC 658 consensus_3915#1 ------------------------------------------------------------ consensus_3915#2 ------------------------------------------------------------ consensus_3915#0 GTTGTTTTTCTTGTGGGACTCTTGTTGTCTATCGAAGCGCCTGCCGATATAGCAGCAAAT 718 consensus_3915#1 ----- consensus_3915#2 ----- consensus_3915#0 AACAA 723 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||