|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3916#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1052 fasta sequence
[CAGAATNGCCCAGGGCTTTNCCTCTTTGCACACAAACAACGGTTATCATCCCTTTAAGTAACAACTTTCTAGAATCTCGTGTTCGCTCGCTATTTAAAAAAAAACACACACAAACACAAAACGAAATCTTTTTTCTAAAAAACATACGGTTCGTTTATAGACGTTGCGTTGAACTCTTATCTACGTTCACTTTTATNTTAGTGCGTTACAAATTTAGCTCTAATTACTTTCATCCTTTATTCTAATGCCAACTCAGTGTTGTAACACAATTACCTACGTCACACAACAAACCACACACGCCATGGGGGTATTACGGAAAGAGGTATAGTAACGTATNTAGAGCATTGCACAAGCACGCATTAAGGGAAGAAAGACCAAGAGTTAAACAGGTTAACNGGCACCGAGGTTTCAGGCACNCAGCCACCGNCAATNGGTCAGCCCACTATGCTCTCAGGGGGANACGAAACCCCACGGACANAGGGGCCANTTCTGGCTACTAACCTATTAACCAAGCCACATGTGAATTGGGTGNGGCTGAAAAGACCCGTCCCACCCCCACCTAGTATCCCCACACTNGTAAGGCGAAANACGGTTAAGNACANAANACGGAGTNNGGGCCAGTTGGGACTTGCATNGNAANACNGCCANNTTACAACCACAGCGGAATTAACCCTAGANAATANCACCACACCATNAACGCGGGNCCANAACGGGCCGACTTATTAACGGCTACACACCCGGTTGCNCAACCACGGCTTTTTTNNAGCTTCCANACTTGGGGTTTGCGGACCCCACTTTGGGGGCCTGGGCAGACGCTGCNCAACCNACACGCGAGAACCATCCAGNATACNTAACCCGNGATAGACNCACGCNCCGTTAAACAGATGGGTNCNCATAACGAGGAGTNCACCGAAGGGANTAAAGCAGAACCGNGACACAATTGGTGATNTGAAAANTTAGCANCGACTAAAACGCGTACAGATACCATCGGGGTGTACCCCAGNCGCAGGACGCCCTCCCNAAGCNTGGGCNGCNCCGGNACACTTTCCGCA]
[+] EMBL AL695850 [CAGAATNGCCCAGGGCTTTNCCTCTTTGCACACAAACAACGGTTATCATCCCTTTAAGTAACAACTTTCTAGAATCTCGTGTTCGCTCGCTATTTAAAAAAAAACACACACAAACACAAAACGAAATCTTTTTTCTAAAAAACATACGGTTCGTTTATAGACGTTGCGTTGAACTCTTATCTACGTTCACTTTTATNTTAGTGCGTTACAAATTTAGCTCTAATTACTTTCATCCTTTATTCTAATGCCAACTCAGTGTTGTAACACAATTACCTACGTCACACAACAAACCACACACGCCATGGGGGTATTACGGAAAGAGGTATAGTAACGTATNTAGAGCATTGCACAAGCACGCATTAAGGGAAGAAAGACCAAGAGTTAAACAGGTTAACNGGCACCGAGGTTTCAGGCACNCAGCCACCGNCAATNGGTCAGCCCACTATGCTCTCAGGGGGANACGAAACCCCACGGACANAGGGGCCANTTCTGGCTACTAACCTATTAACCAAGCCACATGTGAATTGGGTGNGGCTGAAAAGACCCGTCCCACCCCCACCTAGTATCCCCACACTNGTAAGGCGAAANACGGTTAAGNACANAANACGGAGTNNGGGCCAGTTGGGACTTGCATNGNAANACNGCCANNTTACAACCACAGCGGAATTAACCCTAGANAATANCACCACACCATNAACGCGGGNCCANAACGGGCCGACTTATTAACGGCTACACACCCGGTTGCNCAACCACGGCTTTTTTNNAGCTTCCANACTTGGGGTTTGCGGACCCCACTTTGGGGGCCTGGGCAGACGCTGCNCAACCNACACGCGAGAACCATCCAGNATACNTAACCCGNGATAGACNCACGCNCCGTTAAACAGATGGGTNCNCATAACGAGGAGTNCACCGAAGGGANTAAAGCAGAACCGNGACACAATTGGTGATNTGAAAANTTAGCANCGACTAAAACGCGTACAGATACCATCGGGGTGTACCCCAGNCGCAGGACGCCCTCCCNAAGCNTGGGCNGCNCCGGNACACTTTCCGCA]
consensusID : consensus_3916#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CCGTTCGTTTATAGACGTTGCGTTGAACTCTTTCTCGTTCACTTTTATTTAGTGCGTTAAAAATTTAGCTCTAATTCTTTCATCCTTTATTCTAATGCCAACTCAGTGTTGTACACAATTACCTACTCACACACAAACACACACGCATGGGTATACGAGAGTATGTTGTTTTGCATGCAAGACGCATAGGAGAAGCAGAGTAAAGTTAGGACGAGTTAGCACAGTACAGTATTGTTGCCATTGTTAGGGAACAAACCACGAAAGGCATTGCTTACTTACCACCCTGGATGGGGGTGAAGCCTCACCACGAATACAGGCCCCCCCCCCCCCTTTCCAATTTAGCAACGTAACAAACATTGCATGGTGATGAACGCATGAACAAGGATACTTAAAACAATACGGCAAAGCATATACGTAAGCGAAAGTTTATCATGTTGCATGGTGACGCAAAACAAAAATACGTAAACCTAATGTATAGGTCGTGTTCACGCATGGTGAATACACTACTATTTGTACAGGCTCAGTGGCAGATTCTAGCAAATGTTATGTTGTTTCATTTCTATCGTGTAATGCTAATTTTATACCAACTTTGGATATTTTATTAGAACCATCTGTTTTGTTTGCTTTTTTTTTTTGACAAAAATGTGTTTCTTTAATTAAATAAAATTTGTAACGAAAGA]
[+] EMBL BM645238 [CCGTTCGTTTATAGACGTTGCGTTGAACTCTTTCTCGTTCACTTTTATTTAGTGCGTTAAAAATTTAGCTCTAATTCTTTCATCCTTTATTCTAATGCCAACTCAGTGTTGTACACAATTACCTACTCACACACAAACACACACGCATGGGTATACGAGAGTATGTTGTTTTGCATGCAAGACGCATAGGAGAAGCAGAGTAAAGTTAGGACGAGTTAGCACAGTACAGTATTGTTGCCATTGTTAGGGAACAAACCACGAAAGGCATTGCTTACTTACCACCCTGGATGGGGGTGAAGCCTCACCACGAATACAGGCCCCCCCCCCCCCTTTCCAATTTAGCAACGTAACAAACATTGCATGGTGATGAACGCATGAACAAGGATACTTAAAACAATACGGCAAAGCATATACGTAAGCGAAAGTTTATCATGTTGCATGGTGACGCAAAACAAAAATACGTAAACCTAATGTATAGGTCGTGTTCACGCATGGTGAATACACTACTATTTGTACAGGCTCAGTGGCAGATTCTAGCAAATGTTATGTTGTTTCATTTCTATCGTGTAATGCTAATTTTATACCAACTTTGGATATTTTATTAGAACCATCTGTTTTGTTTGCTTTTTTTTTTTGACAAAAATGTGTTTCTTTAATTAAATAAAATTTGTAACGAAAGA]
consensusID : consensus_3916#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[CCGAACGTAACAAACATTGCATGGTGATGAACGCATGAACAAGGATACTTACGTTGCTAAATTGGAAAGGGGAGGGGGCCTGTATTCGTGGTGAGGCTTCACCCACATTCCAGGGTGGTAAGTAAGCAATGCCTTTCGTGGTTTGTTCCCTAACAATGGCAACAATACTGTACTGTGATAACTCGTCCTAACTTTTCCAATTTAGCAACGTAACAAACATTGCATGGTGATGAACGCATGAACAAGGATACTTAAAACAATACGGCAAAGCATATACGTAAGCGAAAGTTTATCATGTTGCATGGTGACGCAAAACAAAAAATACGTAAACCTAATGTATAGGTCGTGTTCACGCATGGTGAATACACTACTATTTGTACAGGCTCAGTGGCAGATTCTAGCAAATGTTATGTTGTTTCATTTCTATCGTGTAATGCTAATTTTATACCAACTTTGGATTTTTTATTAAGAACCATCTGTTTTGTTTGCTTTTTGTTTTGACAAAAATGTGTTTCTTTTATTAAATAAAATTTGTAACGAAAGATCTCCCTTGAGGTGAGTGTGAGCCAAAAGAGAGAGAGAGAAAGAGAGGAAAATACCAACGAAACAAAAACCCATACCTTTGGAAC]
[+] EMBL BM582233 [CCGAACGTAACAAACATTGCATGGTGATGAACGCATGAACAAGGATACTTACGTTGCTAAATTGGAAAGGGGAGGGGGCCTGTATTCGTGGTGAGGCTTCACCCACATTCCAGGGTGGTAAGTAAGCAATGCCTTTCGTGGTTTGTTCCCTAACAATGGCAACAATACTGTACTGTGATAACTCGTCCTAACTTTTCCAATTTAGCAACGTAACAAACATTGCATGGTGATGAACGCATGAACAAGGATACTTAAAACAATACGGCAAAGCATATACGTAAGCGAAAGTTTATCATGTTGCATGGTGACGCAAAACAAAAAATACGTAAACCTAATGTATAGGTCGTGTTCACGCATGGTGAATACACTACTATTTGTACAGGCTCAGTGGCAGATTCTAGCAAATGTTATGTTGTTTCATTTCTATCGTGTAATGCTAATTTTATACCAACTTTGGATTTTTTATTAAGAACCATCTGTTTTGTTTGCTTTTTGTTTTGACAAAAATGTGTTTCTTTTATTAAATAAAATTTGTAACGAAAGATCTCCCTTGAGGTGAGTGTGAGCCAAAAGAGAGAGAGAGAAAGAGAGGAAAATACCAACGAAACAAAAACCCATACCTTTGGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3916#1 ------------------------------------------------------------
consensus_3916#2 ------------------------------------------------------------
consensus_3916#0 CAGAATNGCCCAGGGCTTTNCCTCTTTGCACACAAACAACGGTTATCATCCCTTTAAGTA 60
consensus_3916#1 ------------------------------------------------------------
consensus_3916#2 ------------------------------------------------------------
consensus_3916#0 ACAACTTTCTAGAATCTCGTGTTCGCTCGCTATTTAAAAAAAAACACACACAAACACAAA 120
consensus_3916#1 --------------------------CCGTTCGTTTATAGACGTTGCGTTGAACTCTTTC 34
consensus_3916#2 ------------------------------------------------------------
consensus_3916#0 ACGAAATCTTTTTTCTAAAAAACATACGGTTCGTTTATAGACGTTGCGTTGAACTCTTAT 180
consensus_3916#1 T--CGTTCACTTTTATTT-AGTGCGTTAAAAATTTAGCTCTAATT-CTTTCATCCTTTAT 90
consensus_3916#2 ------------------------------------------------------------
consensus_3916#0 CTACGTTCACTTTTATNTTAGTGCGTTACAAATTTAGCTCTAATTACTTTCATCCTTTAT 240
consensus_3916#1 TCTAATGCCAACTCAGTGTTGTA-CACAATTACCTAC-TCACACAC--AAACACACACGC 146
consensus_3916#2 ----------------------C-CGAACGTAACAAA-CATTGCAT--GGTGATGAACGC 34
consensus_3916#0 TCTAATGCCAACTCAGTGTTGTAACACAATTACCTACGTCACACAACAAACCACACACGC 300
* * ** * * ** * ****
consensus_3916#1 -ATGGGTAT---ACGAGAGTATGTTGTTTTGCATGCAAGACGCATAGGAGAAGCAG--AG 200
consensus_3916#2 -ATGA-------ACAAGGATAC-TTACGTTGC---TAAATTGGAAAGGGGAGGGGG--CC 80
consensus_3916#0 CATGGGGGTATTACGGAAAGAGGTATAGTAACGTATNTAGAGCATTGCACAAGCACGCAT 360
*** ** * * * * * * * * *
consensus_3916#1 TAAAGTTAGGACGAGTTAGCACAGTACAGTATTGTTGCCATT--GTTAGGGAACAAACCA 258
consensus_3916#2 TGTATTCGTGGTGAGGCTTCAC----CCACATTCCAG-------GGTGGTAAGTAAGCAA 129
consensus_3916#0 TAAGGGAAGAAAGACCAAGAGTTAAACAGGTTAACNGGCACCGAGGTTTCAGGCACNCAG 420
* ** * * * * * * *
consensus_3916#1 CGAAAGGCA--TTGCTTACTTACCAC---CCTGGATGGGGGTGAAGCCTCACCACGAATA 313
consensus_3916#2 TGCCTTTCG--TGGTTTGTTCCCTAA---C---AATGGCAACAATACTGTACTGTGATAA 181
consensus_3916#0 CCACCGNCAATNGGTCAGCCCACTATGCTCTCAGGGGGANACGAAACCCCACGGACANAG 480
* * * * * ** * * ** *
consensus_3916#1 CAGGCCCCCCCCCCCCCTTTCCAATTTAGCAACGTA-ACAAACATTGCATGGTGATGAAC 372
consensus_3916#2 C-----TCGTCCTAACTTTTCCAATTTAGCAACGTA-ACAAACATTGCATGGTGATGAAC 235
consensus_3916#0 GGGCCANTTCTGGCTACTAACCTATTAACCAAGCCACATGTGAATTGGGTGNGGCTGAAA 540
* ** *** * *** * * **** ** * ****
consensus_3916#1 GCATG------------AACAAGGATACTTAAAACAATACGGCAAAGCATA------TAC 414
consensus_3916#2 GCATG------------AACAAGGATACTTAAAACAATACGGCAAAGCATA------TAC 277
consensus_3916#0 AGACCCGTCCCACCCCCACCTAGTATCCCCACACTNGTAAGGCGAAANACGGTTAAGNAC 600
* * * ** ** * * * ** *** ** * **
consensus_3916#1 GTAAGCGAAAGTTTA------TCATG--TTGCATGGTGACGCA---AAACAAAAA-TAC- 461
consensus_3916#2 GTAAGCGAAAGTTTA------TCATG--TTGCATGGTGACGCA---AAACAAAAAATAC- 325
consensus_3916#0 ANAANACGGAGTNNGGGCCAGTTGGGACTTGCATNGNAANACNGCCANNTTACAACCACA 660
** *** * * ****** * * * * * ** **
consensus_3916#1 GTAAACCTAATGTATAGGTCGTGTTCACGCATGGTGAATACACTACTATT-TGTACAGGC 520
consensus_3916#2 GTAAACCTAATGTATAGGTCGTGTTCACGCATGGTGAATACACTACTATT-TGTACAGGC 384
consensus_3916#0 GCGGAATTAAC-CCTAGANAATANCACCACACCATNAACGCGGGNCCANAACGGGCCGAC 719
* * *** *** * * ** * ** * * * * * * *
consensus_3916#1 TCAGTGGCAG----ATTCTAGCAAATGTTATGTTGTTTCATTTCTATCGTGTAATGCTAA 576
consensus_3916#2 TCAGTGGCAG----ATTCTAGCAAATGTTATGTTGTTTCATTTCTATCGTGTAATGCTAA 440
consensus_3916#0 TTATTAACGGCTACACACCCGGTTGCNCAACCACGGCTTTTTTNNAGCTTCCANACTTGG 779
* * * * * * * * * * * *** * * * * *
consensus_3916#1 T-TTTATA---CCAACTTTGGATATTTTATTA-GAACCATCTGTTTTGTTTGCT------ 625
consensus_3916#2 T-TTTATA---CCAACTTTGGATTTTTTATTAAGAACCATCTGTTTTGTTTGCT------ 490
consensus_3916#0 GGTTTGCGGACCCCACTTTGGGGGCCTGGGCAGACGCTGCNCAACCNACACGCGAGAACC 839
*** ** ******* * * * **
consensus_3916#1 ----------TTTTTTTTTTGACAAAAATGTGTTTCTTTAATTAAATAAA-ATTTGTAAC 674
consensus_3916#2 ----------TTTTGTTTT-GACAAAAATGTGTTTCTTTTATTAAATAAA-ATTTGTAAC 538
consensus_3916#0 ATCCAGNATACNTAACCCGNGATAGACNCACGCNCCGTTAAACAGATGGGTNCNCATAAC 899
* ** * * * * ** * * ** ****
consensus_3916#1 GAAAGA------------------------------------------------------ 680
consensus_3916#2 GAAAGATCTCCCTTGAGGTGAGTGTGAGCCAAAAGAGAGAGAGAGAAAGAGAGGAAAATA 598
consensus_3916#0 GAGGAGTNCACCGAAGGGANTAAAGCAGAACCGNGACACAATTGGTGATNTGAAAANTTA 959
**
consensus_3916#1 ------------------------------------------------------------
consensus_3916#2 CCAACGAAACAAAAACCCATACCTTTGGAAC----------------------------- 629
consensus_3916#0 GCANCGACTAAAACGCGTACAGATACCATCGGGGTGTACCCCAGNCGCAGGACGCCCTCC 1019
consensus_3916#1 ---------------------------------
consensus_3916#2 ---------------------------------
consensus_3916#0 CNAAGCNTGGGCNGCNCCGGNACACTTTCCGCA 1052
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||