These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 623 fasta sequence [CCCAGGTTANCTAAATGATGAAACCACCGACATGTTTCTGCTGCTCCTGCTAACGGGCCTTCAGCTGGCGGCCAGGACACGACATTCGGTCTCTTCCGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACA-AAGGCGGTCGAGTACTGGCGATCGCGCGG-ATGTTCCTGCTGTCGGTGCGAAATGCCGA-GAGCGGGCAGCCGTCATCGAGTATCTGGACAGNACCGGGTACACGAAAA-GCACAAAGGCCTGATAGCATGGATATCT-TGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCGCGTAAAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCAACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACACCTTCAACGATCGGTTCTGTGGGCGGGGAGTATCTGTNTATCTGCGA-AACGTTGNCTGCATGATGTATTGACAGCTCTTATGTTGAAGAATT-T-GAGTAAACCACAAACAGTTAGAACGCGTGCTCGCTTTGCTAG-CCCTAAAAAAACAACACACAAACAANANAAAAAACA] [+] EMBL AL695954 [CCCAGGTTANCTAAATGATGAAACCACCGACATGTTTCTGCTGCTCCTGCTAACGGGCCTTCAGCTGGCGGCCAGGACACGACATTCGGTCTCTTCCGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACA AAGGCGGTCGAGTACTGGCGATCGCGCGG ATGTTCCTGCTGTCGGTGCGAAATGCCGA GAGCGGGCAGCCGTCATCGAGTATCTGGACAGNACCGGGTACACGAAAA GCACAAAGGCCTGATAGCATGGATATCT TGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCGCGTAAAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCAACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACACCTTCAACGATCGGTTCTGTGGGCGGGGAGTATCTGTNTATCTGCGA AACGTTGNCTGCATGATGTATTGACAGCTCTTATGTTGAAGAATT T GAGTAAACCACAAACAGTTAGAACGCGTGCTCGCTTTGCTAG CCCTAAAAAAACAACACACAAACAANANAAAAAACA] [+] EMBL AL713822 [ cccgaGGTATACAAGGCGGTCGAGTACTGCCGATCGCGCGGCATGTTCCTGCTGTCGGTGCGAAATGCCGAGGAGCGGGCAGCCGTCATCGAGTATCTGGACAGTACCGGGTACACGAAAACGCACAAAGGCCTGATAGCATGGATATCTGCGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCGCGT AAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCAACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAAC TAACTACACCTTCAACGATCGGTTCTGTGGGC GGGAGTATCTGTTTATCTGCGACAACGTTGCCTGCATGATGTATTGACAGTTTTTATG TGAAGAATTCTCGAGTAAACCACAACCAGTTAGCAAGCGTGCTCGCTTTGCTAGCCCCTAAAAAAAa ] consensusID : consensus_3919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGCTAAGAAATGATGAAACCACAGACACTGTTTCTGCTGCTCCTGCTAACGGCCCTTCAGCTGGCGGCCCAGGACACGACATTCGGTCTCTTCCGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACAAGGCGGTCGAGTACTGCCGATCGCGCGGCATGTTCCTGCTGTCGGTGCGAAATGCCGAGGAGCGGGCAGCCGTCATCGAGTATCTGGACAGTACCGGGTACACGAAAACGCACAAAGGCCTGATAGCATGGATATCTGCGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCGCGTAAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCAACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACACCTTCAACGATCGGTTCTGTGGGCGGGAGTATCTGTT] [+] EMBL BM585826 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCTAAGAAATGATGAAACCACAGACACTGTTTCTGCTGCTCCTGCTAACGGCCCTTCAGCTGGCGGCCCAGGACACGACATTCGGTCTCTTCCGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACAAGGCGGTCGAGTACTGCCGATCGCGCGGCATGTTCCTGCTGTCGGTGCGAAATGCCGAGGAGCGGGCAGCCGTCATCGAGTATCTGGACAGTACCGGGTACACGAAAACGCACAAAGGCCTGATAGCATGGATATCTGCGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCGCGTAAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCAACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACACCTTCAACGATCGGTTCTGTGGGCGGGAGTATCTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3919#0 ---------------------CCCAGGT-TANCTAAATGATGAAACCACCGACA-TGTTT 37 consensus_3919#1 CCGCGGACGCGTGGGCGGACGCGTGGGCGCTAAGAAATGATGAAACCACAGACACTGTTT 60 * ** *************** **** ***** consensus_3919#0 CTGCTGCTCCTGCTAACGGGCCTTCAGCTGGCGGCC-AGGACACGACATTCGGTCTCTTC 96 consensus_3919#1 CTGCTGCTCCTGCTAACGGCCCTTCAGCTGGCGGCCCAGGACACGACATTCGGTCTCTTC 120 ******************* **************** *********************** consensus_3919#0 CGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACAAAGGCGGTCGA 156 consensus_3919#1 CGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACAA-GGCGGTCGA 179 ************************************************** ********* consensus_3919#0 GTACTGGCGATCGCGCGG-ATGTTCCTGCTGTCGGTGCGAAATGCCGAG-AGCGGGCAGC 214 consensus_3919#1 GTACTGCCGATCGCGCGGCATGTTCCTGCTGTCGGTGCGAAATGCCGAGGAGCGGGCAGC 239 ****** *********** ****************************** ********** consensus_3919#0 CGTCATCGAGTATCTGGACAGNACCGGGTACACGAAAA-GCACAAAGGCCTGATAGCATG 273 consensus_3919#1 CGTCATCGAGTATCTGGACAGTACCGGGTACACGAAAACGCACAAAGGCCTGATAGCATG 299 ********************* **************** ********************* consensus_3919#0 GATATCT-TGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCG 332 consensus_3919#1 GATATCTGCGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCG 359 ******* *************************************************** consensus_3919#0 CGTAAAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCA 392 consensus_3919#1 CGTAAA-CTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCA 418 ****** ***************************************************** consensus_3919#0 ACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACA 452 consensus_3919#1 ACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACA 478 ************************************************************ consensus_3919#0 CCTTCAACGATCGGTTCTGTGGGCGGGGAGTATCTGTNTATCTGCGAAACGTTGNCTGCA 512 consensus_3919#1 CCTTCAACGATCGGTTCTGTGGGCGGG-AGTATCTGTT---------------------- 515 *************************** ********* consensus_3919#0 TGATGTATTGACAGCTCTTATGTTGAAGAATTTGAGTAAACCACAAACAGTTAGAACGCG 572 consensus_3919#1 ------------------------------------------------------------ consensus_3919#0 TGCTCGCTTTGCTAGCCCTAAAAAAACAACACACAAACAANANAAAAAACA 623 consensus_3919#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||