cluster # 3919

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3919 cluster # 3919 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3919#0 length = 623 sequences # 2

consensus_3919#1 length = 515 sequences # 1

consensusID : consensus_3919#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 623
fasta sequence

                              [CCCAGGTTANCTAAATGATGAAACCACCGACATGTTTCTGCTGCTCCTGCTAACGGGCCTTCAGCTGGCGGCCAGGACACGACATTCGGTCTCTTCCGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACA-AAGGCGGTCGAGTACTGGCGATCGCGCGG-ATGTTCCTGCTGTCGGTGCGAAATGCCGA-GAGCGGGCAGCCGTCATCGAGTATCTGGACAGNACCGGGTACACGAAAA-GCACAAAGGCCTGATAGCATGGATATCT-TGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCGCGTAAAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCAACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACACCTTCAACGATCGGTTCTGTGGGCGGGGAGTATCTGTNTATCTGCGA-AACGTTGNCTGCATGATGTATTGACAGCTCTTATGTTGAAGAATT-T-GAGTAAACCACAAACAGTTAGAACGCGTGCTCGCTTTGCTAG-CCCTAAAAAAACAACACACAAACAANANAAAAAACA]

[+] EMBL AL695954             [CCCAGGTTANCTAAATGATGAAACCACCGACATGTTTCTGCTGCTCCTGCTAACGGGCCTTCAGCTGGCGGCCAGGACACGACATTCGGTCTCTTCCGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACA AAGGCGGTCGAGTACTGGCGATCGCGCGG ATGTTCCTGCTGTCGGTGCGAAATGCCGA GAGCGGGCAGCCGTCATCGAGTATCTGGACAGNACCGGGTACACGAAAA GCACAAAGGCCTGATAGCATGGATATCT TGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCGCGTAAAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCAACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACACCTTCAACGATCGGTTCTGTGGGCGGGGAGTATCTGTNTATCTGCGA AACGTTGNCTGCATGATGTATTGACAGCTCTTATGTTGAAGAATT T GAGTAAACCACAAACAGTTAGAACGCGTGCTCGCTTTGCTAG CCCTAAAAAAACAACACACAAACAANANAAAAAACA]
[+] EMBL AL713822             [                                                                                                                                      cccgaGGTATACAAGGCGGTCGAGTACTGCCGATCGCGCGGCATGTTCCTGCTGTCGGTGCGAAATGCCGAGGAGCGGGCAGCCGTCATCGAGTATCTGGACAGTACCGGGTACACGAAAACGCACAAAGGCCTGATAGCATGGATATCTGCGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCGCGT AAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCAACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAAC  TAACTACACCTTCAACGATCGGTTCTGTGGGC GGGAGTATCTGTTTATCTGCGACAACGTTGCCTGCATGATGTATTGACAGTTTTTATG TGAAGAATTCTCGAGTAAACCACAACCAGTTAGCAAGCGTGCTCGCTTTGCTAGCCCCTAAAAAAAa                        ]




>consensus_3919#0
CCCAGGTTANCTAAATGATGAAACCACCGACATGTTTCTGCTGCTCCTGCTAACGGGCCT
TCAGCTGGCGGCCAGGACACGACATTCGGTCTCTTCCGGCAGAAGGAGTACTACTTCAGC
AGCTCTTTCAAGCTCAACTGGTACAAAGGCGGTCGAGTACTGGCGATCGCGCGGATGTTC
CTGCTGTCGGTGCGAAATGCCGAGAGCGGGCAGCCGTCATCGAGTATCTGGACAGNACCG
GGTACACGAAAAGCACAAAGGCCTGATAGCATGGATATCTTGAACGATCTCGGCGAGGAG
GGCGAATTCCACTGGGCCTCGACGGGGGAGCGCGTAAAACTATCAGAACTGGAGCGAAAC
GGAACCGAACGATTACAAGATCGACGACTGCAACGGAGAGGATTGCGCGATCCTGGAGTA
CTGGTCGGAGGGTGGGGCCAACTATAACTACACCTTCAACGATCGGTTCTGTGGGCGGGG
AGTATCTGTNTATCTGCGAAACGTTGNCTGCATGATGTATTGACAGCTCTTATGTTGAAG
AATTTGAGTAAACCACAAACAGTTAGAACGCGTGCTCGCTTTGCTAGCCCTAAAAAAACA
ACACACAAACAANANAAAAAACA

consensusID : consensus_3919#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGCTAAGAAATGATGAAACCACAGACACTGTTTCTGCTGCTCCTGCTAACGGCCCTTCAGCTGGCGGCCCAGGACACGACATTCGGTCTCTTCCGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACAAGGCGGTCGAGTACTGCCGATCGCGCGGCATGTTCCTGCTGTCGGTGCGAAATGCCGAGGAGCGGGCAGCCGTCATCGAGTATCTGGACAGTACCGGGTACACGAAAACGCACAAAGGCCTGATAGCATGGATATCTGCGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCGCGTAAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCAACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACACCTTCAACGATCGGTTCTGTGGGCGGGAGTATCTGTT]

[+] EMBL BM585826             [CCGCGGACGCGTGGGCGGACGCGTGGGCGCTAAGAAATGATGAAACCACAGACACTGTTTCTGCTGCTCCTGCTAACGGCCCTTCAGCTGGCGGCCCAGGACACGACATTCGGTCTCTTCCGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACAAGGCGGTCGAGTACTGCCGATCGCGCGGCATGTTCCTGCTGTCGGTGCGAAATGCCGAGGAGCGGGCAGCCGTCATCGAGTATCTGGACAGTACCGGGTACACGAAAACGCACAAAGGCCTGATAGCATGGATATCTGCGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCGCGTAAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCAACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACACCTTCAACGATCGGTTCTGTGGGCGGGAGTATCTGTT]




>consensus_3919#1
CCGCGGACGCGTGGGCGGACGCGTGGGCGCTAAGAAATGATGAAACCACAGACACTGTTT
CTGCTGCTCCTGCTAACGGCCCTTCAGCTGGCGGCCCAGGACACGACATTCGGTCTCTTC
CGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACAAGGCGGTCGAG
TACTGCCGATCGCGCGGCATGTTCCTGCTGTCGGTGCGAAATGCCGAGGAGCGGGCAGCC
GTCATCGAGTATCTGGACAGTACCGGGTACACGAAAACGCACAAAGGCCTGATAGCATGG
ATATCTGCGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCGC
GTAAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCAAC
GGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACACC
TTCAACGATCGGTTCTGTGGGCGGGAGTATCTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3919#0      ---------------------CCCAGGT-TANCTAAATGATGAAACCACCGACA-TGTTT 37
consensus_3919#1      CCGCGGACGCGTGGGCGGACGCGTGGGCGCTAAGAAATGATGAAACCACAGACACTGTTT 60
                                           *   **       *************** **** *****

consensus_3919#0      CTGCTGCTCCTGCTAACGGGCCTTCAGCTGGCGGCC-AGGACACGACATTCGGTCTCTTC 96
consensus_3919#1      CTGCTGCTCCTGCTAACGGCCCTTCAGCTGGCGGCCCAGGACACGACATTCGGTCTCTTC 120
                      ******************* **************** ***********************

consensus_3919#0      CGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACAAAGGCGGTCGA 156
consensus_3919#1      CGGCAGAAGGAGTACTACTTCAGCAGCTCTTTCAAGCTCAACTGGTACAA-GGCGGTCGA 179
                      ************************************************** *********

consensus_3919#0      GTACTGGCGATCGCGCGG-ATGTTCCTGCTGTCGGTGCGAAATGCCGAG-AGCGGGCAGC 214
consensus_3919#1      GTACTGCCGATCGCGCGGCATGTTCCTGCTGTCGGTGCGAAATGCCGAGGAGCGGGCAGC 239
                      ****** *********** ****************************** **********

consensus_3919#0      CGTCATCGAGTATCTGGACAGNACCGGGTACACGAAAA-GCACAAAGGCCTGATAGCATG 273
consensus_3919#1      CGTCATCGAGTATCTGGACAGTACCGGGTACACGAAAACGCACAAAGGCCTGATAGCATG 299
                      ********************* **************** *********************

consensus_3919#0      GATATCT-TGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCG 332
consensus_3919#1      GATATCTGCGAACGATCTCGGCGAGGAGGGCGAATTCCACTGGGCCTCGACGGGGGAGCG 359
                      *******  ***************************************************

consensus_3919#0      CGTAAAACTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCA 392
consensus_3919#1      CGTAAA-CTATCAGAACTGGAGCGAAACGGAACCGAACGATTACAAGATCGACGACTGCA 418
                      ****** *****************************************************

consensus_3919#0      ACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACA 452
consensus_3919#1      ACGGAGAGGATTGCGCGATCCTGGAGTACTGGTCGGAGGGTGGGGCCAACTATAACTACA 478
                      ************************************************************

consensus_3919#0      CCTTCAACGATCGGTTCTGTGGGCGGGGAGTATCTGTNTATCTGCGAAACGTTGNCTGCA 512
consensus_3919#1      CCTTCAACGATCGGTTCTGTGGGCGGG-AGTATCTGTT---------------------- 515
                      *************************** *********                       

consensus_3919#0      TGATGTATTGACAGCTCTTATGTTGAAGAATTTGAGTAAACCACAAACAGTTAGAACGCG 572
consensus_3919#1      ------------------------------------------------------------
                                                                                  

consensus_3919#0      TGCTCGCTTTGCTAGCCCTAAAAAAACAACACACAAACAANANAAAAAACA 623
consensus_3919#1      ---------------------------------------------------