These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [GCCCGAGGTTTCTGGTAGCACAAGCGATTCTAGCAATACGCTCGATGTCGGGTAGCGAAGAGGAGGAGGAGGAGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTGACGCAGATTTGAACTTGGATAGTGATCCCAGTAGGTCAGATCATTTAAAGGTAAAACATTTGCACACCAAAGGAAGGCGGCGTTAAGTTGACCCGGGAAGCGTACAAGAATTTGGGCTCAAGGGCTAAAAAACGGAAAGGAGGAATACGGGACNACATCCCGAAANAAGGGAAACTGGCCTTGGCCCAAAACCAGAGAAACTATCCANACCGCCCCAAAAAAAGGAAACCAAAGCAGGCGGACAGAAGCAAAGCCGCCAANACACGAGGCGNACAACACGGCCCAACACACACCCACGCGACACCGGCAACTTCCAAAANAGGGACGCTTGGGACCTTTGGGAAAGCCGGGCCCNAACGGGGAACTAAACCCAACTTTGGAACCAGACGGGCCGAACCCTTAATCAACGGCAAAACAGGTGGGCGCCACAACCCGGCAAACAAACGCGCCGCCCGCGAAACAACGACACACCACCNAACGGAGNGGCCNCCNNNTNAGNGNGNNGCCCNCACCCCAACAACCCCCCANCCACANCNNCACACNCAAAAAAACAACAACAAAGGAGGGNGGAACAANAAAAACAAACANACNACACACNCCACCCCCCNCCCCCCCCCCGCGCCCCAAAACNACAAGNGGAGCGNGCCCCCCC] [+] EMBL AL696018 [GCCCGAGGTTTCTGGTAGCACAAGCGATTCTAGCAATACGCTCGATGTCGGGTAGCGAAGAGGAGGAGGAGGAGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTGACGCAGATTTGAACTTGGATAGTGATCCCAGTAGGTCAGATCATTTAAAGGTAAAACATTTGCACACCAAAGGAAGGCGGCGTTAAGTTGACCCGGGAAGCGTACAAGAATTTGGGCTCAAGGGCTAAAAAACGGAAAGGAGGAATACGGGACNACATCCCGAAANAAGGGAAACTGGCCTTGGCCCAAAACCAGAGAAACTATCCANACCGCCCCAAAAAAAGGAAACCAAAGCAGGCGGACAGAAGCAAAGCCGCCAANACACGAGGCGNACAACACGGCCCAACACACACCCACGCGACACCGGCAACTTCCAAAANAGGGACGCTTGGGACCTTTGGGAAAGCCGGGCCCNAACGGGGAACTAAACCCAACTTTGGAACCAGACGGGCCGAACCCTTAATCAACGGCAAAACAGGTGGGCGCCACAACCCGGCAAACAAACGCGCCGCCCGCGAAACAACGACACACCACCNAACGGAGNGGCCNCCNNNTNAGNGNGNNGCCCNCACCCCAACAACCCCCCANCCACANCNNCACACNCAAAAAAACAACAACAAAGGAGGGNGGAACAANAAAAACAAACANACNACACACNCCACCCCCCNCCCCCCCCCCGCGCCCCAAAACNACAAGNGGAGCGNGCCCCCCC] consensusID : consensus_3923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGGGACAAGCGATGAACGGTGCAGGAGCAACTAGCCTGGAATTACATTCGGAGAGTGCCTTAAAAATGGATGCTAGTTTTGAGGAAATTATAGGGCAAAAGGCAATCCAAGTTTCGGCGGAATGGGATTCTGAAGATAGCGACACAGCGGATGAAACTAACGATGCTTCTGAGTATGAAGATGTCGATTACGAATCGAAACTAGCGAACGTTTTCTCGAACATGTCACTCGCAACATCTCAGTCGAAACTATCGATGTACTCTACGGAAAGTAACGAAGCGTCGGCCGAAACTCACGGACAAGATGCCGAGCGTACCCTGGTGCAGAGTGACACCGAGGAAGAAGAAGATCCCGATGAACGTTACGATGAAGGGAATGGTTCCGGTAGCACAAGCGATTCTAGCAATACGCTCGATGCGGGTAGCGAAGAGGAGGAGGAGGAGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTGACGCAGATTTGAACTTGGATAGTGATCCCAGTAGTCAGATCATTAAAGTAAACATTGCACACAAGAAGCGCGTTAGTGACCCGGAAGCGTACAAGAATTGGCTCAAGGCTAAAAACGAAGAGATACGGAAAAATCGCGAAAAGGAGCTGCTTGCCAAACAGGAACTTCAACGCCAAAAA] [+] EMBL BM656622 [CCGGGACAAGCGATGAACGGTGCAGGAGCAACTAGCCTGGAATTACATTCGGAGAGTGCCTTAAAAATGGATGCTAGTTTTGAGGAAATTATAGGGCAAAAGGCAATCCAAGTTTCGGCGGAATGGGATTCTGAAGATAGCGACACAGCGGATGAAACTAACGATGCTTCTGAGTATGAAGATGTCGATTACGAATCGAAACTAGCGAACGTTTTCTCGAACATGTCACTCGCAACATCTCAGTCGAAACTATCGATGTACTCTACGGAAAGTAACGAAGCGTCGGCCGAAACTCACGGACAAGATGCCGAGCGTACCCTGGTGCAGAGTGACACCGAGGAAGAAGAAGATCCCGATGAACGTTACGATGAAGGGAATGGTTCCGGTAGCACAAGCGATTCTAGCAATACGCTCGATGCGGGTAGCGAAGAGGAGGAGGAGGAGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTGACGCAGATTTGAACTTGGATAGTGATCCCAGTAGTCAGATCATTAAAGTAAACATTGCACACAAGAAGCGCGTTAGTGACCCGGAAGCGTACAAGAATTGGCTCAAGGCTAAAAACGAAGAGATACGGAAAAATCGCGAAAAGGAGCTGCTTGCCAAACAGGAACTTCAACGCCAAAAA] consensusID : consensus_3923#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [AGATGACCTTAAAAACTGGACTGGCTAGNTTTTGAGTGAAATAATACGGGACAAAGAGGACAATACCAAGTCTTCCGANCGANNATGGGATNTTCTGAATGATANAGACACAGTNGGATGAGGCTAACNATNNTTCCTGAGTATGAAGATGTCGATGACGAATCGAAACTATCTAACGTTTTCTCGAACATGTCACTCGCAACATCACAGTCGAAGCTATCGATGTACTCTACGGAAAGTAACGAAGCGTCGGACGGAACTCACGGACANAGATGCCGAGCGTACCCTGGTGCAGAGTGACACCGAGGAAGAAGAAGATCCCGATGNACCGTTACGATGAAAGGGAATGGTTC] [+] EMBL BX619832 [AGATGACCTTAAAAACTGGACTGGCTAGNTTTTGAGTGAAATAATACGGGACAAAGAGGACAATACCAAGTCTTCCGANCGANNATGGGATNTTCTGAATGATANAGACACAGTNGGATGAGGCTAACNATNNTTCCTGAGTATGAAGATGTCGATGACGAATCGAAACTATCTAACGTTTTCTCGAACATGTCACTCGCAACATCACAGTCGAAGCTATCGATGTACTCTACGGAAAGTAACGAAGCGTCGGACGGAACTCACGGACANAGATGCCGAGCGTACCCTGGTGCAGAGTGACACCGAGGAAGAAGAAGATCCCGATGNACCGTTACGATGAAAGGGAATGGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3923#1 ---------------------------------------------------CCGGGACAA 9 consensus_3923#2 ------------------------------------------------------------ consensus_3923#0 GCCCGAGGTTTCTGGTAGCACAAGCGATTCTAGCAATACGCTCGATGTCGGGTAGCGAAG 60 consensus_3923#1 GCGATGAACGGTGCAGGAGCAACTAGCCTGGAATTACATTCGGAGAGTGCCTTAAAAA-T 68 consensus_3923#2 -------------------------------------------AGATGACCTTAAAAACT 17 consensus_3923#0 AGGAGGAGGAGGAGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTG 120 ** * consensus_3923#1 GGAT--GCTAGTTTT-GAG--GAAAT--TA-TAGGGCAAA--AGGCAAT-CCAAGTTTC- 116 consensus_3923#2 GGACTGGCTAGNTTTTGAGT-GAAATAATA-CGGGACAAAGAGGACAATACCAAGTCTTC 75 consensus_3923#0 ACGCAGATTTGAACTTGGATAGTGATCCCAGTAGGTCAGATCATTTAAAGGTAAAACATT 180 * * * * * ** * ** ** * ** ** consensus_3923#1 --GGCG-GAATGGGAT--TCTGAA-GATAGCGACACAG-CGGATGAAACTAACGATGCTT 169 consensus_3923#2 CGANCGANNATGGGATNTTCTGAATGATANAGACACAGTNGGATGAGGCTAACNATNNTT 135 consensus_3923#0 TGCACACCAAAGGAAGG--CGGCGTTAAGTTGACCCGGGAAGCGTACAAGAATTTGGGCT 238 * * ** * * * * *** * * * * ** * consensus_3923#1 C-TGAGTATGAAGATGTCGATTACGAAT-CGAAACTAGCGAACGTTTTCTCGAACATGTC 227 consensus_3923#2 CCTGAGTATGAAGATGTCGATGACGAAT-CGAAACTATCTAACGTTTTCTCGAACATGTC 194 consensus_3923#0 CAAGGGCTAAAAAACGGAAAGGAGGAATACGGGACNACATCCCGAAANAAGGGAAACTGG 298 * * * ** * * * * **** ** ** * ** * * * consensus_3923#1 ACTCGCAACATCTCAGTCGAAACTATCGATGT-ACTCTACGGAAAGTAA--CGAAGC-GT 283 consensus_3923#2 ACTCGCAACATCACAGTCGAAGCTATCGATGT-ACTCTACGGAAAGTAA--CGAAGC-GT 250 consensus_3923#0 CCTTGGCCCAAAACCAGAGAAACTATCCANACCGCCCCAAAAAAAGGAAACCAAAGCAGG 358 ** * ** * *** ***** * * * * **** ** * **** * consensus_3923#1 CGGCCGAAACTCACGG-ACAA-GATGCCGAGCGTAC-------CCTGGTGCAGA-----G 329 consensus_3923#2 CGGACGGAACTCACGG-ACANAGATGCCGAGCGTAC-------CCTGGTGCAGA-----G 297 consensus_3923#0 CGGACAGAAGCAAAGCCGCCAANACACGAGGCGNACAACACGGCCCAACACACACCCACG 418 *** * ** * * * * * *** ** ** ** * * consensus_3923#1 TGACACCGAGGA-----AGAAGAAGATCCCGATGAAC-GTTACGATGAA-GGGAATGGTT 382 consensus_3923#2 TGACACCGAGGA-----AGAAGAAGATCCCGATGNACCGTTACGATGAAAGGGAATGGTT 352 consensus_3923#0 CGACACCGGCAACTTCCAAAANAGGGACGCTTGGGACCTTTGGGAAAGCCGGGCCCNAAC 478 ******* * * ** * * * * * ** ** ** *** consensus_3923#1 CCGGTAGCACAAGCGATTCTAGCAATACGCTCGATGCGGGTAGCGAAGAGGAGGAGGAGG 442 consensus_3923#2 C----------------------------------------------------------- 353 consensus_3923#0 GGGGAACTAAACCCAACTTTGGAACCAGACGGGCCGAACCCTTAATCAACGGCAAAACAG 538 consensus_3923#1 AGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTGACGCAGATTTGA 502 consensus_3923#2 ------------------------------------------------------------ consensus_3923#0 GTGGGCGCCACAACCCGGCAAACAAACGCGCCGCCCGCGAAACAACGACACACCACCNAA 598 consensus_3923#1 ACTTGGATAGTGATCCCAGTAGTCAGATCATTAAAGTAAACATTGCACACAAGAAGCGCG 562 consensus_3923#2 ------------------------------------------------------------ consensus_3923#0 CGGAGNGGCCNCCNNNTNAGNGNGNNGCCCNCACCCCAACAACCCCCCANCCACANCNNC 658 consensus_3923#1 TTAGTGACCCGGAAGCGTACAAGAATTGGCTCAAGGCTAAAAACGAAGAGATACGGAAAA 622 consensus_3923#2 ------------------------------------------------------------ consensus_3923#0 ACACNCAAAAAAACAACAACAAAGGAGGGNGGAACAANAAAAACAAACANACNACACACN 718 consensus_3923#1 ATCGCGAAAAGGAGCTGCTTGCCAAACAGGAACTTCAACGCCAAAAA------- 669 consensus_3923#2 ------------------------------------------------------ consensus_3923#0 CCACCCCCCNCCCCCCCCCCGCGCCCCAAAACNACAAGNGGAGCGNGCCCCCCC 772 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||