cluster # 3926

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Anopheles gambiae
cluster # 3926 cluster # 3926 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3926#0 length = 685 sequences # 1

consensus_3926#1 length = 684 sequences # 1
consensus_3926#2 length = 437 sequences # 1

consensusID : consensus_3926#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CCGCCCACGCGTCCGGTGGACAGTGTGTATTTTTGCGTAGCTAGAGCGACTCGATGCTGCTAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATGGAAGGAATGATTTTGTGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTCGTGTTGCTACTGTTGTGCCTCGTGCTACAACACACCGATCTGCTGTGTTGGAAGTCTGTGCTGTGTGCTGATACCGCTGCTCGGGCTGCTGGTGATTCTGTTCGGCGCAGTGTTTGGCATGATCGTTGGCATAGCCTGGCTGACACAGAACCACACCGAACCAGCGACCGTCAACCGTATGCTTGCGATACTGGCAAACAGTTCCGCCGGGGAGTCTTTCACCGCGAGCGAACAAAGTGTTGTGCAGTAATAGGAGCTGGACGGTGGAGGAGTTGTTATCAATCCATTATCAAGCACTTCCGACACAACACGAACAGCGGGTGTCAACACACAAAAAAACATCTTTAGAGCAACTTTGTATGCTAGGTCTTTCCCCTACAGCAACAACACCCCCGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCGTGCGGTGCGGCAGATGCCACCTCGGAGATTAGAATTGCGGAGATCGATTAGCTGAAGCAGCAGCGGTAGTAGC]

[+] EMBL BM598028             [CCGCCCACGCGTCCGGTGGACAGTGTGTATTTTTGCGTAGCTAGAGCGACTCGATGCTGCTAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATGGAAGGAATGATTTTGTGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTCGTGTTGCTACTGTTGTGCCTCGTGCTACAACACACCGATCTGCTGTGTTGGAAGTCTGTGCTGTGTGCTGATACCGCTGCTCGGGCTGCTGGTGATTCTGTTCGGCGCAGTGTTTGGCATGATCGTTGGCATAGCCTGGCTGACACAGAACCACACCGAACCAGCGACCGTCAACCGTATGCTTGCGATACTGGCAAACAGTTCCGCCGGGGAGTCTTTCACCGCGAGCGAACAAAGTGTTGTGCAGTAATAGGAGCTGGACGGTGGAGGAGTTGTTATCAATCCATTATCAAGCACTTCCGACACAACACGAACAGCGGGTGTCAACACACAAAAAAACATCTTTAGAGCAACTTTGTATGCTAGGTCTTTCCCCTACAGCAACAACACCCCCGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCGTGCGGTGCGGCAGATGCCACCTCGGAGATTAGAATTGCGGAGATCGATTAGCTGAAGCAGCAGCGGTAGTAGC]




>consensus_3926#0
CCGCCCACGCGTCCGGTGGACAGTGTGTATTTTTGCGTAGCTAGAGCGACTCGATGCTGC
TAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATGGAAGGAATGAT
TTTGTGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTCG
TGTTGCTACTGTTGTGCCTCGTGCTACAACACACCGATCTGCTGTGTTGGAAGTCTGTGC
TGTGTGCTGATACCGCTGCTCGGGCTGCTGGTGATTCTGTTCGGCGCAGTGTTTGGCATG
ATCGTTGGCATAGCCTGGCTGACACAGAACCACACCGAACCAGCGACCGTCAACCGTATG
CTTGCGATACTGGCAAACAGTTCCGCCGGGGAGTCTTTCACCGCGAGCGAACAAAGTGTT
GTGCAGTAATAGGAGCTGGACGGTGGAGGAGTTGTTATCAATCCATTATCAAGCACTTCC
GACACAACACGAACAGCGGGTGTCAACACACAAAAAAACATCTTTAGAGCAACTTTGTAT
GCTAGGTCTTTCCCCTACAGCAACAACACCCCCGGGGACTGGCATGGTTCTCGGATGGTC
AAGGAAAATGCGTGCGGTGCGGCAGATGCCACCTCGGAGATTAGAATTGCGGAGATCGAT
TAGCTGAAGCAGCAGCGGTAGTAGC

consensusID : consensus_3926#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CCCGAGGTTTACTAGAGCGACTCGATGCTGCTAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATGTGAAGGAATGATTTTGCGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTCGTGTTGCTACTGTTGTGCCTCGTGCTACAACACACCGATTTTGCTGTGTATGGAAGTCTNGTGCTAGTGTTGCTTGATACCGGTGCTCGGGCTGCTGGTGATTCTTGTTCGGCGCAGNTGTTTGGCATGGATCGTTGGCATAGGCCTGGCTGGCACAGAACCACACCGAACCGGCGACCGTCAAACCGTATTGCTTGCGATACTGGCAAAACAGTTCCGGCGGGGAGTCTTTCAGCCGGAGCTGAACAACAGTGTTGTGCACGTAGGAGCTTGGGACGGTTGGANGGGCAGTATGTAAATTCAAATCCCATTTAATTCAAAGANCTTGGGCATTGGGTTCTCCGNGATTGGGTTCCAAACGGGTCNACAAATTGGCGGTTGCCGGANTGCTCGGGGCACGGATTGACCCACNCCCCTCTCGTGCAGGCANATTTCANGAATTNTGCCGGGAGGCATTCCGCGATCTAGCTTCGCAAACGGCCCAGCCAGAGNGGCGGCTAGGTTAAAGNACAAGGGANCCTATCCAACGCATA]

[+] EMBL AL696173             [CCCGAGGTTTACTAGAGCGACTCGATGCTGCTAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATGTGAAGGAATGATTTTGCGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTCGTGTTGCTACTGTTGTGCCTCGTGCTACAACACACCGATTTTGCTGTGTATGGAAGTCTNGTGCTAGTGTTGCTTGATACCGGTGCTCGGGCTGCTGGTGATTCTTGTTCGGCGCAGNTGTTTGGCATGGATCGTTGGCATAGGCCTGGCTGGCACAGAACCACACCGAACCGGCGACCGTCAAACCGTATTGCTTGCGATACTGGCAAAACAGTTCCGGCGGGGAGTCTTTCAGCCGGAGCTGAACAACAGTGTTGTGCACGTAGGAGCTTGGGACGGTTGGANGGGCAGTATGTAAATTCAAATCCCATTTAATTCAAAGANCTTGGGCATTGGGTTCTCCGNGATTGGGTTCCAAACGGGTCNACAAATTGGCGGTTGCCGGANTGCTCGGGGCACGGATTGACCCACNCCCCTCTCGTGCAGGCANATTTCANGAATTNTGCCGGGAGGCATTCCGCGATCTAGCTTCGCAAACGGCCCAGCCAGAGNGGCGGCTAGGTTAAAGNACAAGGGANCCTATCCAACGCATA]




>consensus_3926#1
CCCGAGGTTTACTAGAGCGACTCGATGCTGCTAGTGAACGAGTGAGAGTTTTAGGCGATT
CTTTTTTAGGGCCGCGGATGTGAAGGAATGATTTTGCGGGTAGAATCGAACCGAGCAGCA
CCGGCAGTCCGATGGGAGAGTGCGTCAAGTCGTGTTGCTACTGTTGTGCCTCGTGCTACA
ACACACCGATTTTGCTGTGTATGGAAGTCTNGTGCTAGTGTTGCTTGATACCGGTGCTCG
GGCTGCTGGTGATTCTTGTTCGGCGCAGNTGTTTGGCATGGATCGTTGGCATAGGCCTGG
CTGGCACAGAACCACACCGAACCGGCGACCGTCAAACCGTATTGCTTGCGATACTGGCAA
AACAGTTCCGGCGGGGAGTCTTTCAGCCGGAGCTGAACAACAGTGTTGTGCACGTAGGAG
CTTGGGACGGTTGGANGGGCAGTATGTAAATTCAAATCCCATTTAATTCAAAGANCTTGG
GCATTGGGTTCTCCGNGATTGGGTTCCAAACGGGTCNACAAATTGGCGGTTGCCGGANTG
CTCGGGGCACGGATTGACCCACNCCCCTCTCGTGCAGGCANATTTCANGAATTNTGCCGG
GAGGCATTCCGCGATCTAGCTTCGCAAACGGCCCAGCCAGAGNGGCGGCTAGGTTAAAGN
ACAAGGGANCCTATCCAACGCATA

consensusID : consensus_3926#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [ATGCCCGAGGTTTACAACACACCGATCTGCTGTGTTGGAAGTCTGTGCTGTGTGCTGATACCGCTGCTCGGGCTGCTGGTGATTCTGTTCGGCGCAGTGTTTGGCATGATCGTTGGCATAGCCTGGCTGACACAGAACCACACCGAACCAGCGACCGTCAACCGTATGCTTGCGATACTGGCAAACAGTTCCGCCGGGGAGTCTTTCACCGCGAGCGAACAAAGTGTTGTGCAGTAATAGGAGCTGGACGGTGGAGGAGTTGTTATCAATCCATTATCAAGCACTTCCGACACAACACGAACAGCGGGTGTCAACACACAAAAAAACATCTTTAGAGCAACTTTGTATGCTAGGTCTTTCCCCTACAGCAACAACACCCCCGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCGTGCGGTGCGGCAGATGC]

[+] EMBL AL934766             [ATGCCCGAGGTTTACAACACACCGATCTGCTGTGTTGGAAGTCTGTGCTGTGTGCTGATACCGCTGCTCGGGCTGCTGGTGATTCTGTTCGGCGCAGTGTTTGGCATGATCGTTGGCATAGCCTGGCTGACACAGAACCACACCGAACCAGCGACCGTCAACCGTATGCTTGCGATACTGGCAAACAGTTCCGCCGGGGAGTCTTTCACCGCGAGCGAACAAAGTGTTGTGCAGTAATAGGAGCTGGACGGTGGAGGAGTTGTTATCAATCCATTATCAAGCACTTCCGACACAACACGAACAGCGGGTGTCAACACACAAAAAAACATCTTTAGAGCAACTTTGTATGCTAGGTCTTTCCCCTACAGCAACAACACCCCCGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCGTGCGGTGCGGCAGATGC]




>consensus_3926#2
ATGCCCGAGGTTTACAACACACCGATCTGCTGTGTTGGAAGTCTGTGCTGTGTGCTGATA
CCGCTGCTCGGGCTGCTGGTGATTCTGTTCGGCGCAGTGTTTGGCATGATCGTTGGCATA
GCCTGGCTGACACAGAACCACACCGAACCAGCGACCGTCAACCGTATGCTTGCGATACTG
GCAAACAGTTCCGCCGGGGAGTCTTTCACCGCGAGCGAACAAAGTGTTGTGCAGTAATAG
GAGCTGGACGGTGGAGGAGTTGTTATCAATCCATTATCAAGCACTTCCGACACAACACGA
ACAGCGGGTGTCAACACACAAAAAAACATCTTTAGAGCAACTTTGTATGCTAGGTCTTTC
CCCTACAGCAACAACACCCCCGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCG
TGCGGTGCGGCAGATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3926#0      CCGCCCACGCGTCCGGTGGACAGTGTGTATTTTTGCGTAGCTAGAGCGACTCGATGCTGC 60
consensus_3926#2      ------------------------------------------------------------
consensus_3926#1      -----------------------------CCCGAGGTTTACTAGAGCGACTCGATGCTGC 31
                                                                                  

consensus_3926#0      TAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATG-GAAGGAATGA 119
consensus_3926#2      ------------------------------------------------------------
consensus_3926#1      TAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATGTGAAGGAATGA 91
                                                                                  

consensus_3926#0      TTTTGTGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTC 179
consensus_3926#2      ------------------------------------------------------------
consensus_3926#1      TTTTGCGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTC 151
                                                                                  

consensus_3926#0      GTGTTGCTACTGTTGTGCCTCGTGCT-ACAACACACCGATCT-GCTGTGT-TGGAAGTCT 236
consensus_3926#2      --------------ATGCCCGAGGTTTACAACACACCGATCT-GCTGTGT-TGGAAGTCT 44
consensus_3926#1      GTGTTGCTACTGTTGTGCCTCGTGCT-ACAACACACCGATTTTGCTGTGTATGGAAGTCT 210
                                     ****    * * ************* * ******* *********

consensus_3926#0      G-TGCT-GTGTG--CTGATACCGCTGCTCGGGCTGCTGGTGATTCT-GTTCGGCGCAGT- 290
consensus_3926#2      G-TGCT-GTGTG--CTGATACCGCTGCTCGGGCTGCTGGTGATTCT-GTTCGGCGCAGT- 98
consensus_3926#1      NGTGCTAGTGTTGCTTGATACCGGTGCTCGGGCTGCTGGTGATTCTTGTTCGGCGCAGNT 270
                        **** ****    ******** ********************** ***********  

consensus_3926#0      GTTTGGCATG-ATCGTTGGCATAG-CCTGGCTGACACAGAACCACACCGAACCAGCGACC 348
consensus_3926#2      GTTTGGCATG-ATCGTTGGCATAG-CCTGGCTGACACAGAACCACACCGAACCAGCGACC 156
consensus_3926#1      GTTTGGCATGGATCGTTGGCATAGGCCTGGCTGGCACAGAACCACACCGAACCGGCGACC 330
                      ********** ************* ******** ******************* ******

consensus_3926#0      GTCAA-CCGTAT-GCTTGCGATACTGGCAAA-CAGTTCCGCCGGGGAGTCTTTCACCGCG 405
consensus_3926#2      GTCAA-CCGTAT-GCTTGCGATACTGGCAAA-CAGTTCCGCCGGGGAGTCTTTCACCGCG 213
consensus_3926#1      GTCAAACCGTATTGCTTGCGATACTGGCAAAACAGTTCCGGCGGGGAGTCTTTCAGCCGG 390
                      ***** ****** ****************** ******** ************** *  *

consensus_3926#0      AGC-GAACAA-AGTGTTGTGCAGTAATAGGAGCT--GGACGGT-GGAGGAGTTGT-TATC 459
consensus_3926#2      AGC-GAACAA-AGTGTTGTGCAGTAATAGGAGCT--GGACGGT-GGAGGAGTTGT-TATC 267
consensus_3926#1      AGCTGAACAACAGTGTTGTGCA--CGTAGGAGCTTGGGACGGTTGGANGGGCAGTATGTA 448
                      *** ****** ***********    ********  ******* *** * *  ** * * 

consensus_3926#0      AATCCATTATCAAGCACTTCCGACACAACACGAACAGCGGGTGTCAACACACAA------ 513
consensus_3926#2      AATCCATTATCAAGCACTTCCGACACAACACGAACAGCGGGTGTCAACACACAA------ 321
consensus_3926#1      AATTCAAATCCCATTTAATTCAA-AGANCTTGGGCATTGGGTTCTCCGNGATTGGGTTCC 507
                      *** **    * *     * * * * * *  *  **  ****        *         

consensus_3926#0      AAAAACATCTTTAGAGCAACT-TTGTATGCTAGGTCTTTCCCCTACAGCAACAACACCCC 572
consensus_3926#2      AAAAACATCTTTAGAGCAACT-TTGTATGCTAGGTCTTTCCCCTACAGCAACAACACCCC 380
consensus_3926#1      AAACGGGTCNACAAATTGGCGGTTGCCGGANTGCTCGGGGCACGGATTGACCCACNCCCC 567
                      ***    **   * *    *  ***   *   * **    * *      * * ** ****

consensus_3926#0      -CGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCGT-GCGGTGCGGCAGATGCC 630
consensus_3926#2      -CGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCGT-GCGGTGCGGCAGATGC- 437
consensus_3926#1      TCTCGTGCAGGCANATTTCANGAATTNTGCCGGGAGGCATTCCGCGATCTAGCTT-CGCA 626
                       *  *  * ****   ***  * **  *   ** *        *** *   **    ** 

consensus_3926#0      ACCTCGGAGATTAGAATTGCGGAGATCGATTAGCTGAAGCAGCAGCGGTAGTAGC--- 685
consensus_3926#2      ----------------------------------------------------------
consensus_3926#1      AACGGCCCAGCCAGAGNGGCGGCTAGGTTAAAGNACAAGGGANCCTATCCAACGCATA 684