These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 771 fasta sequence [CCGCCCACGCGTCCGCGAAGCAGATGAGCTTCAAGTCGCTGGCGGAGGCGGAGAATGCGCCCGAGTTCATCATGACCGATTTTGCGAAGTGGGACCATCCGGCCAACACGCAGATCGCGTTCACCGTGCTCGGCCGCTACCAGGAGCAGCACGGCCGGCTGCCGCGCCCCTGGAACGTGGAGGATGCGGCCGAGTTCGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGATGCTGACCAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGGTGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCAGTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTGTGCTCCGACCGGGTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGACGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGCGCCGGTGCGATCGGCTGCGAGCTGCTGAAGAACTTTGCGATGATTGGCGTCGCGTCCAAGGGCGACGGTGAAATCATCGTCACCGATATGGATCTGATCGAGAAGAGCAACCTGAACCGGCAGTTCCTGTTCCGGCCGCACGATGTGCAGCAGCCGAAGTCGCGCGTCGCCGCCCAGGCCGTGAAGCGCATGAACGGCGACATTTAAGGTGACGTCGCACGAGAACCGCGTCGGGCCGGAA] [+] EMBL BM614977 [CCGCCCACGCGTCCGCGAAGCAGATGAGCTTCAAGTCGCTGGCGGAGGCGGAGAATGCGCCCGAGTTCATCATGACCGATTTTGCGAAGTGGGACCATCCGGCCAACACGCAGATCGCGTTCACCGTGCTCGGCCGCTACCAGGAGCAGCACGGCCGGCTGCCGCGCCCCTGGAACGTGGAGGATGCGGCCGAGTTCGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGATGCTGACCAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGGTGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCAGTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTGTGCTCCGACCGGGTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGACGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGCGCCGGTGCGATCGGCTGCGAGCTGCTGAAGAACTTTGCGATGATTGGCGTCGCGTCCAAGGGCGACGGTGAAA ] [+] EMBL BM609728 [ ccgGGCCGAGTTCGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGATGCTGACCAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGGTGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCAGTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTGTGCTCCGACCGGGTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGACGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGCGCCGGTGCGATCGGCTGCGAGCTGCTGAAGAACTTTGCGATGATTGGCGTCGCGTCCAAGGGCGACGGTGAAATCATCGTCACCGATATGGATCTGATCGAGAAGAGCAACCTGAACCGGCAGTTCCTGTTCCGGCCGCACGATGTGCAGCAGCCGAAGTCGCGCGTCGCCGCCCAGGCCGTGAAGCGCATGAACGGCGACATTTAAGGTGACGTCGCACGAGAACCGCGTCGGGCCGGAA] consensusID : consensus_3927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGCGCGGTGGCATCGCGACCCAGGTGAAGATGTCGAAGCAGATGAGCTTCAAGTCGCTGGCCGAGGCGGAGAATGCGCCCGAGTTCATCATGACCGACTTTGCGAAGTGGGACCATCCGGCTAACACGCAGATCGCGTTCACCGTGCTCGGCCGCTACCAGGAGCAGCACGGCCGGCTGCCACGTCCCTGGAACGTGGAGGATGCGGCCGAGTTCGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGATGCTGACGAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGGTGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCAGTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTGTGCCCCGACCGGTTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGACGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGGGGCCGGT] [+] EMBL BM600190 [CCGCGGACGCGTGGGCGGACGCGTGGGGCGCGGTGGCATCGCGACCCAGGTGAAGATGTCGAAGCAGATGAGCTTCAAGTCGCTGGCCGAGGCGGAGAATGCGCCCGAGTTCATCATGACCGACTTTGCGAAGTGGGACCATCCGGCTAACACGCAGATCGCGTTCACCGTGCTCGGCCGCTACCAGGAGCAGCACGGCCGGCTGCCACGTCCCTGGAACGTGGAGGATGCGGCCGAGTTCGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGATGCTGACGAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGGTGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCAGTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTGTGCCCCGACCGGTTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGACGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGGGGCCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3927#0 -----------------------------------------CCGCCCACGCGTCCG---C 16 consensus_3927#1 CCGCGGACGCGTGGGCGGACGCGTGGGGCGCGGTGGCATCGCGACCCAGGTGAAGATGTC 60 * **** * * * consensus_3927#0 GAAGCAGATGAGCTTCAAGTCGCTGGCGGAGGCGGAGAATGCGCCCGAGTTCATCATGAC 76 consensus_3927#1 GAAGCAGATGAGCTTCAAGTCGCTGGCCGAGGCGGAGAATGCGCCCGAGTTCATCATGAC 120 *************************** ******************************** consensus_3927#0 CGATTTTGCGAAGTGGGACCATCCGGCCAACACGCAGATCGCGTTCACCGTGCTCGGCCG 136 consensus_3927#1 CGACTTTGCGAAGTGGGACCATCCGGCTAACACGCAGATCGCGTTCACCGTGCTCGGCCG 180 *** *********************** ******************************** consensus_3927#0 CTACCAGGAGCAGCACGGCCGGCTGCCGCGCCCCTGGAACGTGGAGGATGCGGCCGAGTT 196 consensus_3927#1 CTACCAGGAGCAGCACGGCCGGCTGCCACGTCCCTGGAACGTGGAGGATGCGGCCGAGTT 240 *************************** ** ***************************** consensus_3927#0 CGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGAT 256 consensus_3927#1 CGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGAT 300 ************************************************************ consensus_3927#0 GCTGACCAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGG 316 consensus_3927#1 GCTGACGAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGG 360 ****** ***************************************************** consensus_3927#0 TGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCA 376 consensus_3927#1 TGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCA 420 ************************************************************ consensus_3927#0 GTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTG 436 consensus_3927#1 GTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTG 480 ************************************************************ consensus_3927#0 TGCTCCGACCGGGTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGA 496 consensus_3927#1 TGCCCCGACCGGTTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGA 540 *** ******** *********************************************** consensus_3927#0 CGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGCG-CCGGTGCGATCGGCTGCGAGCTGC 555 consensus_3927#1 CGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGGGGCCGGT------------------- 581 ********************************* * ***** consensus_3927#0 TGAAGAACTTTGCGATGATTGGCGTCGCGTCCAAGGGCGACGGTGAAATCATCGTCACCG 615 consensus_3927#1 ------------------------------------------------------------ consensus_3927#0 ATATGGATCTGATCGAGAAGAGCAACCTGAACCGGCAGTTCCTGTTCCGGCCGCACGATG 675 consensus_3927#1 ------------------------------------------------------------ consensus_3927#0 TGCAGCAGCCGAAGTCGCGCGTCGCCGCCCAGGCCGTGAAGCGCATGAACGGCGACATTT 735 consensus_3927#1 ------------------------------------------------------------ consensus_3927#0 AAGGTGACGTCGCACGAGAACCGCGTCGGGCCGGAA 771 consensus_3927#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||