These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [GATCGCAGCAGGTTAAGCACTGTTGTGGAGCAGACGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGAAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCAAATCTGAGGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAACGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGANACAAGGCCAAGGAACAGAGCTGCAAGCAAGGGTNATGCATACACCTCGAAACTGCATCTATGTATCAACGCAGAAGCAACTCGGAGCCGTGCCCTGAACGATCGTTCANNAGCGACGTCTACAATCCAAAAGCACTAGTNGCTGGAGCCAGAGCCAAAACTTCCCAACTACTCG] [+] EMBL AL696224 [GATCGCAGCAGGTTAAGCACTGTTGTGGAGCAGACGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGAAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCAAATCTGAGGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAACGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGANACAAGGCCAAGGAACAGAGCTGCAAGCAAGGGTNATGCATACACCTCGAAACTGCATCTATGTATCAACGCAGAAGCAACTCGGAGCCGTGCCCTGAACGATCGTTCANNAGCGACGTCTACAATCCAAAAGCACTAGTNGCTGGAGCCAGAGCCAAAACTTCCCAACTACTCG] consensusID : consensus_3929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [AAGAGGAGTNTACCACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGNAAGAGTCCGAAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGAATGGAGCGTGCTCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTANGAAGCGTGGNTCACCCTGAGACGTGCAACAAATACATCCTCCTGCTACAAGAACAAGGCCAAGGAACNGAGCTGCAAGAAGGGNTATGCATACACCTCGAAACCTGCNTCTATGTATCCAAGCAGAAGAATGGGAGCGGTGCCCCTGAACNATGTTCAAGAGG] [+] EMBL BX626127 [AAGAGGAGTNTACCACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGNAAGAGTCCGAAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGAATGGAGCGTGCTCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTANGAAGCGTGGNTCACCCTGAGACGTGCAACAAATACATCCTCCTGCTACAAGAACAAGGCCAAGGAACNGAGCTGCAAGAAGGGNTATGCATACACCTCGAAACCTGCNTCTATGTATCCAAGCAGAAGAATGGGAGCGGTGCCCCTGAACNATGTTCAAGAGG] consensusID : consensus_3929#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [ATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAACTCTGGAACGTACGATTATCTGTGTGTCAATGCTATTCAAGGTAGCGTGCCCCATCCCGACTCCTGCACGAAATACATCGTCTGTTCCAATAGTAAGGCGAATGAAGAAAGCTGCAAGAATGGATACTACTTCTCGGTCTACCTGAAGTCATGCATCAAAGGAAACAGCGAAACTTGCGCTGAAATCAATGGAAACGATGGTAC] [+] EMBL BX627606 [ATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGCTACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTGCATCTATGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACAACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACTGGAGAGGATTCCTCGGAGAACTCTGGAACGTACGATTATCTGTGTGTCAATGCTATTCAAGGTAGCGTGCCCCATCCCGACTCCTGCACGAAATACATCGTCTGTTCCAATAGTAAGGCGAATGAAGAAAGCTGCAAGAATGGATACTACTTCTCGGTCTACCTGAAGTCATGCATCAAAGGAAACAGCGAAACTTGCGCTGAAATCAATGGAAACGATGGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3929#0 -----GATCGCAGCAGGTTAAGCACTGTTGTGGAGCAGACGCCAACCTTCCCAACTACTG 55 consensus_3929#1 AAGAGGAGTNTACCACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTG 60 consensus_3929#2 ------------------------------------------------------------ consensus_3929#0 AA-GAGTCCGGAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGT 114 consensus_3929#1 NAAGAGTCCGAAACTGGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGT 120 consensus_3929#2 ----------------------ATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGT 38 ************************************** consensus_3929#0 GCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGC 174 consensus_3929#1 GCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGC 180 consensus_3929#2 GCCAAGACTCTTGTAGGAAGCGTGGCTCACCCTGAGACGTGCAACAAATACATCTCCTGC 98 ************************************************************ consensus_3929#0 TACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTG 234 consensus_3929#1 TACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTG 240 consensus_3929#2 TACAAGAACAAGGCCAAGGAACAGAGCTGCAAGAAGGGTTATGCATACACCTCGAAACTG 158 ************************************************************ consensus_3929#0 CATCTATGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACA 294 consensus_3929#1 CATCTATGTATCAAGCAGAAGAATGGAGCGTGCTCTGACGATGTTCAAGAGGAGTCTACA 300 consensus_3929#2 CATCTATGTATCAAGCAGAAGAATGGAGCGTGCCCTGACGATGTTCAAGAGGAGTCTACA 218 ********************************* ************************** consensus_3929#0 ACCCAAAGCACTGTTGTGAAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCAAATCT 354 consensus_3929#1 ACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACT 360 consensus_3929#2 ACCCAAAGCACTGTTGTGGAGCCAGAGCCAACCTTCCCAACTACTGAAGAGTCCGGAACT 278 ****************** *********************************** * ** consensus_3929#0 GAGGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTA 414 consensus_3929#1 GGAGAGGATTCCTCGGAGAGCTCTGGAACGTACGATTATCTGTGTGCCAAGACTCTTGTA 420 consensus_3929#2 GGAGAGGATTCCTCGGAGAACTCTGGAACGTACGATTATCTGTGTGTCAATGCTATTCAA 338 * **************** ************************** *** ** ** * consensus_3929#0 GGAACGCGTGGCTCACCCTGAGACGTGCAACAAATACATC-TCCTGCTACAAGANACAAG 473 consensus_3929#1 NGAA-GCGTGGNTCACCCTGAGACGTGCAACAAATACATCCTCCTGCTACAAGAA-CAAG 478 consensus_3929#2 GGTA-GCGTGCCCCATCCCGACTCCTGCACGAAATACATC-GTCTGTTCCAATAG-TAAG 395 * * ***** ** ** ** * **** ********* *** * *** * *** consensus_3929#0 GCCAAGGAACAGAGCTGCAAGCAAGGGTNATGCATACACCTCGAA--AC-TGCATCTATG 530 consensus_3929#1 GCCAAGGAACNGAGCTGCAAG-AAGGGNTATGCATACACCTCGAA--ACCTGCNTCTATG 535 consensus_3929#2 GCGAATGAAGAAAGCTGCAAG-AATGGATAC---TACTTCTCGGTCTACCTGAAGTCATG 451 ** ** *** ********* ** ** * *** **** ** ** *** consensus_3929#0 TATCAACGCAGAAGCAACTCGGAGCCGTGCCC-TGAACGATCGTTCANNAGCGACGTCTA 589 consensus_3929#1 TATCCAAGCAGAAGAA--TGGGAGCGGTGCCCCTGAACNAT-GTTCAAGAGG-------- 584 consensus_3929#2 CATCAAAG--GAAACA---GCGAAACTTGCGCTGAAATCAATGGAAACGATGGTAC---- 502 *** * * *** * ** *** * ** * * * * consensus_3929#0 CAATCCAAAAGCACTAGTNGCTGGAGCCAGAGCCAAAACTTCCCAACTACTCG 642 consensus_3929#1 ----------------------------------------------------- consensus_3929#2 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||