These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1031 fasta sequence [CCGATCGCCAGCGTCACCACTGAAGTCGCCGAGCAAGATACCGGGACTAGCCAGAAGGCCGGAAAACATTTCGTCCGAAAGCCGATCGCGGAGCACCTCGAAGCAGCGCGCCAACGCGAAAACACCGGAAACGCCCTCCGACCAGCCGCTAATCAAAAAAGTACCAATGAACAAAATACAGGTCGGTGGGGCACCATCTCCGAATCTGAAGGTCGTGAAGTCAAAGATCGGCTCGCTGGAAAATGCCAGCCACAAGCCGGGCGGTGGCAATGTGAAGATTGAAACGAAGAAGATCGACATCAAGGCGGCCCCACGAATCGAAGCGAAGAATGATGCGTACATACCGAAGGGTGGCGACAAGAAGATCATCAGCACAAAGCTGCAGTGGAATGCAAAGCCCAAGATTGGGTCGTTGGATAATGCTAGCCACAAACCGGGCGGCGGGGACAAGCGCATCGAGTCGATCAAGACGGACTTTAAGGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACGTACAAACCCGGCGGTGGTGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCACTGGACAACCTCAAACACAAGCCGGGCGGCGGTGATAAAGAAGATCTTCGACGACAAGGAGTATCTGAAGAACATTGAACATCCGATCACGCCCAGTCCTTCCTCGCAGGAGTATCTGTACAAATTCTATTAGTATTAAACCTCCCCTGAAACCGTCTGACCAAACCGCAGCAGCAGCAGCAGCAGCAGCACCTTCATCATCCCAGCCTTCCACCAAACTCTGCATGGCCGTGACGCGCGTACGCTGCCAGCTTTGCTACTCCCAAAACGGGCTCCTCGATCTTCGTTTCTCTTCCGCTAGATCTAGTTCGTGCTCTTCCAGTGTTTGTTGTGTTGTCTAGCAACAGCGTTCTTGCTCGCCCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTTCGTTTCATTGTTATCCAATTATCG] [+] EMBL BM644979 [CCGATCGCCAGCGTCACCACTGAAGTCGCCGAGCAAGATACCGGGACTAGCCAGAAGGCCGGAAAACATTTCGTCCGAAAGCCGATCGCGGAGCACCTCGAAGCAGCGCGCCAACGCGAAAACACCGGAAACGCCCTCCGACCAGCCGCTAATCAAAAAAGTACCAATGAACAAAATACAGGTCGGTGGGGCACCATCTCCGAATCTGAAGGTCGTGAAGTCAAAGATCGGCTCGCTGGAAAATGCCAGCCACAAGCCGGGCGGTGGCAATGTGAAGATTGAAACGAAGAAGATCGACATCAAGGCGGCCCCACGAATCGAAGCGAAGAATGATGCGTACATACCGAAGGGTGGCGACAAGAAGATCATCAGCACAAAGCTGCAGTGGAATGCAAAGCCCAAGATTGGGTCGTTGGATAATGCTAGCCACAAACCGGGCGGCGGGGACAAGCGCATCGAGTCGATCAAGACGGACTTTAAGGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACGTACAAACCCGGCGGTGGTGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCACTGGACAACCTCAAACACAAGCCGGGCGGCGGTGATAAAGAAGATCTTCGACGACAAGGAGTATCTGAAGAACATTGAACATCCGATCACGCCCAGTCCTTCC ] [+] EMBL BM599729 [ ccgGCAAAGCCCAAGATTGGGTCGTTGGATAATGCTAGCCACAAACCGGGCGGCGGAGACAAGCGCATCGAGTCGATCAAGACGGACTTTAAGGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACATACAAACCCGGCGGTGGTGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCACTGGACAACCTCAAACACAAGCCGGGCGGCGGTGAT AAGAAGATCTTCGACGACAAGGAGTATCTGAAGAACATTGAGCATCCGATCACGCCCAGTCCTTCCTCGCAGGAGTATCTGTACAAATTCTATTAGTATTAAACCTCCCCTGAAACCGTCTGACCAAACCGCAGCAGCAGCAGCAGCAGCAGCACCTTCATCATCCCAGCCTTCCACCAAACTCTGCATGGCCGTGACGCGCGTACGCTGCCAGCTTTGCTACTCCCAAAACGGGCTCCTCGATCTTCGTTTCTCTTCCGCTAGATCTAGTTCGTGCTCTTCCAGTGTTTGTTGTGTTGTCTAGCAACAGCGTTCTTGCTCGCCCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTTCGTTTCATTGTTATCCAATTATCG] consensusID : consensus_3943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CCGCGTGAATGTGTTTCTGGATCAATTTCACAGCTCGATGGAACGGAAGAATGCAGCTACAGTAGCAACGCCGCCGAAGCCGAGCTGGAGTAGAGAGCTTTGCTAAATCATAATACTGGCTTATATCTACACACAATCACATACACACACACACACTACTCTTGATCTGCTTGCTGTAGCTCGATGTGCACGCCGCCCGCCACTGTCCAACGCCACCGGTAGTGAATTCTACCCCCGCAGAGAAAGAGTGTCGTTTGGGCAGAGCAGTCGATCGCTATTGCTGCACACATAGTACTCTGCACCATCGTACAACATCGATTTGTTCGTTTCATTTCGAATTGTAGGTGGCTCTGCTCAACCGTTGTTCTAGAAGAGGAAAAGAATGTTGTTTGCGCGTGTCTTTATATGTTTGTGTGATGTGATGTTTGTTTTGTGTGGTTGTTTGTTTTCGCGTTCTAAAATTAAAATTTACCCCAAATTTGTATATTTTCTCCCTTTATTTTCGATTGGATTTCTTGTTCTATTTCCTTTTGTTGTTTGTACTTTATAGGTTAATTTTGGTTTCTTTGTTTCTTTCTTTACTTCTTTTCTTTTTTTACAGCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTT] [+] EMBL BM604963 [CCGCGTGAATGTGTTTCTGGATCAATTTCACAGCTCGATGGAACGGAAGAATGCAGCTACAGTAGCAACGCCGCCGAAGCCGAGCTGGAGTAGAGAGCTTTGCTAAATCATAATACTGGCTTATATCTACACACAATCACATACACACACACACACTACTCTTGATCTGCTTGCTGTAGCTCGATGTGCACGCCGCCCGCCACTGTCCAACGCCACCGGTAGTGAATTCTACCCCCGCAGAGAAAGAGTGTCGTTTGGGCAGAGCAGTCGATCGCTATTGCTGCACACATAGTACTCTGCACCATCGTACAACATCGATTTGTTCGTTTCATTTCGAATTGTAGGTGGCTCTGCTCAACCGTTGTTCTAGAAGAGGAAAAGAATGTTGTTTGCGCGTGTCTTTATATGTTTGTGTGATGTGATGTTTGTTTTGTGTGGTTGTTTGTTTTCGCGTTCTAAAATTAAAATTTACCCCAAATTTGTATATTTTCTCCCTTTATTTTCGATTGGATTTCTTGTTCTATTTCCTTTTGTTGTTTGTACTTTATAGGTTAATTTTGGTTTCTTTGTTTCTTTCTTTACTTCTTTTCTTTTTTTACAGCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3943#0 CCGATCGCCAGCGTCACCACTGAAGTCGCCGAGCAAGATACCGGGACTAGCCAGAAGGCC 60 consensus_3943#1 ------------------------------------------------------------ consensus_3943#0 GGAAAACATTTCGTCCGAAAGCCGATCGCGGAGCACCTCGAAGCAGCGCGCCAACGCGAA 120 consensus_3943#1 ------------------------------------------------------------ consensus_3943#0 AACACCGGAAACGCCCTCCGACCAGCCGCTAATCAAAAAAGTACCAATGAACAAAATACA 180 consensus_3943#1 ------------------------------------------------------------ consensus_3943#0 GGTCGGTGGGGCACCATCTCCGAATCTGAAGGTCGTGAAGTCAAAGATCGGCTCGCTGGA 240 consensus_3943#1 ------------------------------------------------------------ consensus_3943#0 AAATGCCAGCCACAAGCCGGGCGGTGGCAATGTGAAGATTGAAACGAAGAAGATCGACAT 300 consensus_3943#1 ------------------------------------------------------CCGCGT 6 * * * consensus_3943#0 CAAGGCGGCCCCACGAATCGAAGCGA-AGAATGATGCGTACATACCGAAGGGTGGCGACA 359 consensus_3943#1 GAATGTGTTTC--TGGATCAATTTCACAGCTCGATG-GAACGGA--AGAATGCAGCTACA 61 ** * * * * *** * * ** **** * ** * * * ** *** consensus_3943#0 AGAAGATCATCAGCACAAAGCTGCAGTGGAATGCAAAGCCCAAGATTGGGTCGTTGGATA 419 consensus_3943#1 GTAGCAACGCCGCC--GAAGCCGAGCTGGAGTAGAGAGCTTTG--CTAAATC-----ATA 112 * * * * * **** * **** * * *** * ** *** consensus_3943#0 ATGCTAGCCACAAACCGGGCGGCGGGGACAAGCGCATCGAGTCGATCAAGACGGACTTTA 479 consensus_3943#1 ATACTGGCTTATATCTACAC-------ACAATCACATACACACACACACACTACTCTTGA 165 ** ** ** * * * **** * *** * * ** *** * consensus_3943#0 AGGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACGTACAAACCCGGCGGTG 539 consensus_3943#1 TCTGCTTGCTGTAGCTCGATGTGCACGCCGCCCGCCAC----TGTCCAACGCCACCGGTA 221 * * * * * ** ** ** *** ** **** consensus_3943#0 GTGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCAC 599 consensus_3943#1 GTGA-------ATTCTACCCCCGCAG--AGAAAGAGTGTCGTTTGGGCAGAGCAG-TCGA 271 **** ** *** ** * ** *** * * ** * *** * * ** consensus_3943#0 TGGACAACCTCAAACACAAGCCGGGCGGCGGTGATAAAGAAGATCTTCGACGACAAGGAG 659 consensus_3943#1 TCGCTATTGCTGCACACATAGTACTCTGCACCATCGTACAACATC--GATTTGTTCGTTT 329 * * * ***** * ** * ** *** * consensus_3943#0 TATCTGAAGAACATTGAACATCCGATCACGCCCAGTCCTTCCTCGCAGGAGTATCTGTAC 719 consensus_3943#1 CATTTCGA----ATTGTAGGT--GGCTCTGCTCAACCGTTGTTC-TAGAAGAG--GAAAA 380 ** * * **** * * * ** ** * ** ** ** ** * consensus_3943#0 AAATTCTATTAGTATTAAACCTCCCCTGAAACCGTCTGACCAAACCGCAGCAGCAGCAGC 779 consensus_3943#1 GAATGTTGTTTGCGCGTGTCTTTATATGT--TTGTGTGAT---------GTGATGTTTGT 429 *** * ** * * * ** ** *** * * consensus_3943#0 AGCAGCAGCACCTTCATCATCCCAGCCTTCCACCAAACTCTGCATGGCCGTGACGCGCGT 839 consensus_3943#1 TTTGTGTGGTTGTTTGTTTTCGCGTTCTAAAATTAAAATTTAC----CCCAAATTTGTAT 485 * ** * ** * ** * *** * * * ** * * * consensus_3943#0 ACGCTGCCAGCTTTGCTACTCCCAAAACGGGCTCCTCGATCTTCGTTTCTCTTCCGCTAG 899 consensus_3943#1 AT-TTTCTCCCTTTATTTTCGATTGGATTTCTTGTTCTATTTCCTTTTGTTGTTTGTACT 544 * * * **** * * * ** ** * * *** * * * consensus_3943#0 ATCTAGTTCGTGCTCTTCCAGTGTTTGTTGTGTTGTCTAGCAACAGCGTTCTTGCTCGCC 959 consensus_3943#1 TTATAGGT--TAATTTTGGTTTCTTTGTTTCTTTCTTTA-CTTCTTTTCTTTTTTTACAG 601 * *** * * * ** * ****** ** * ** * * * ** * consensus_3943#0 CCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTTCGTTTCATTGTT 1019 consensus_3943#1 CCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTT------------ 649 ************************************************ consensus_3943#0 ATCCAATTATCG 1031 consensus_3943#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||