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Anopheles gambiae
cluster # 3943 cluster # 3943       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3943#0 length = 1031 sequences # 2  
consensus_3943#1 length = 649 sequences # 1  

consensusID : consensus_3943#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1031
fasta sequence
                              [CCGATCGCCAGCGTCACCACTGAAGTCGCCGAGCAAGATACCGGGACTAGCCAGAAGGCCGGAAAACATTTCGTCCGAAAGCCGATCGCGGAGCACCTCGAAGCAGCGCGCCAACGCGAAAACACCGGAAACGCCCTCCGACCAGCCGCTAATCAAAAAAGTACCAATGAACAAAATACAGGTCGGTGGGGCACCATCTCCGAATCTGAAGGTCGTGAAGTCAAAGATCGGCTCGCTGGAAAATGCCAGCCACAAGCCGGGCGGTGGCAATGTGAAGATTGAAACGAAGAAGATCGACATCAAGGCGGCCCCACGAATCGAAGCGAAGAATGATGCGTACATACCGAAGGGTGGCGACAAGAAGATCATCAGCACAAAGCTGCAGTGGAATGCAAAGCCCAAGATTGGGTCGTTGGATAATGCTAGCCACAAACCGGGCGGCGGGGACAAGCGCATCGAGTCGATCAAGACGGACTTTAAGGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACGTACAAACCCGGCGGTGGTGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCACTGGACAACCTCAAACACAAGCCGGGCGGCGGTGATAAAGAAGATCTTCGACGACAAGGAGTATCTGAAGAACATTGAACATCCGATCACGCCCAGTCCTTCCTCGCAGGAGTATCTGTACAAATTCTATTAGTATTAAACCTCCCCTGAAACCGTCTGACCAAACCGCAGCAGCAGCAGCAGCAGCAGCACCTTCATCATCCCAGCCTTCCACCAAACTCTGCATGGCCGTGACGCGCGTACGCTGCCAGCTTTGCTACTCCCAAAACGGGCTCCTCGATCTTCGTTTCTCTTCCGCTAGATCTAGTTCGTGCTCTTCCAGTGTTTGTTGTGTTGTCTAGCAACAGCGTTCTTGCTCGCCCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTTCGTTTCATTGTTATCCAATTATCG]

[+] EMBL BM644979             [CCGATCGCCAGCGTCACCACTGAAGTCGCCGAGCAAGATACCGGGACTAGCCAGAAGGCCGGAAAACATTTCGTCCGAAAGCCGATCGCGGAGCACCTCGAAGCAGCGCGCCAACGCGAAAACACCGGAAACGCCCTCCGACCAGCCGCTAATCAAAAAAGTACCAATGAACAAAATACAGGTCGGTGGGGCACCATCTCCGAATCTGAAGGTCGTGAAGTCAAAGATCGGCTCGCTGGAAAATGCCAGCCACAAGCCGGGCGGTGGCAATGTGAAGATTGAAACGAAGAAGATCGACATCAAGGCGGCCCCACGAATCGAAGCGAAGAATGATGCGTACATACCGAAGGGTGGCGACAAGAAGATCATCAGCACAAAGCTGCAGTGGAATGCAAAGCCCAAGATTGGGTCGTTGGATAATGCTAGCCACAAACCGGGCGGCGGGGACAAGCGCATCGAGTCGATCAAGACGGACTTTAAGGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACGTACAAACCCGGCGGTGGTGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCACTGGACAACCTCAAACACAAGCCGGGCGGCGGTGATAAAGAAGATCTTCGACGACAAGGAGTATCTGAAGAACATTGAACATCCGATCACGCCCAGTCCTTCC                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM599729             [                                                                                                                                                                                                                                                                                                                                                                                                    ccgGCAAAGCCCAAGATTGGGTCGTTGGATAATGCTAGCCACAAACCGGGCGGCGGAGACAAGCGCATCGAGTCGATCAAGACGGACTTTAAGGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACATACAAACCCGGCGGTGGTGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCACTGGACAACCTCAAACACAAGCCGGGCGGCGGTGAT AAGAAGATCTTCGACGACAAGGAGTATCTGAAGAACATTGAGCATCCGATCACGCCCAGTCCTTCCTCGCAGGAGTATCTGTACAAATTCTATTAGTATTAAACCTCCCCTGAAACCGTCTGACCAAACCGCAGCAGCAGCAGCAGCAGCAGCACCTTCATCATCCCAGCCTTCCACCAAACTCTGCATGGCCGTGACGCGCGTACGCTGCCAGCTTTGCTACTCCCAAAACGGGCTCCTCGATCTTCGTTTCTCTTCCGCTAGATCTAGTTCGTGCTCTTCCAGTGTTTGTTGTGTTGTCTAGCAACAGCGTTCTTGCTCGCCCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTTCGTTTCATTGTTATCCAATTATCG]


>consensus_3943#0 CCGATCGCCAGCGTCACCACTGAAGTCGCCGAGCAAGATACCGGGACTAGCCAGAAGGCC GGAAAACATTTCGTCCGAAAGCCGATCGCGGAGCACCTCGAAGCAGCGCGCCAACGCGAA AACACCGGAAACGCCCTCCGACCAGCCGCTAATCAAAAAAGTACCAATGAACAAAATACA GGTCGGTGGGGCACCATCTCCGAATCTGAAGGTCGTGAAGTCAAAGATCGGCTCGCTGGA AAATGCCAGCCACAAGCCGGGCGGTGGCAATGTGAAGATTGAAACGAAGAAGATCGACAT CAAGGCGGCCCCACGAATCGAAGCGAAGAATGATGCGTACATACCGAAGGGTGGCGACAA GAAGATCATCAGCACAAAGCTGCAGTGGAATGCAAAGCCCAAGATTGGGTCGTTGGATAA TGCTAGCCACAAACCGGGCGGCGGGGACAAGCGCATCGAGTCGATCAAGACGGACTTTAA GGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACGTACAAACCCGGCGGTGG TGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCACT GGACAACCTCAAACACAAGCCGGGCGGCGGTGATAAAGAAGATCTTCGACGACAAGGAGT ATCTGAAGAACATTGAACATCCGATCACGCCCAGTCCTTCCTCGCAGGAGTATCTGTACA AATTCTATTAGTATTAAACCTCCCCTGAAACCGTCTGACCAAACCGCAGCAGCAGCAGCA GCAGCAGCACCTTCATCATCCCAGCCTTCCACCAAACTCTGCATGGCCGTGACGCGCGTA CGCTGCCAGCTTTGCTACTCCCAAAACGGGCTCCTCGATCTTCGTTTCTCTTCCGCTAGA TCTAGTTCGTGCTCTTCCAGTGTTTGTTGTGTTGTCTAGCAACAGCGTTCTTGCTCGCCC CAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTTCGTTTCATTGTTA TCCAATTATCG



consensusID : consensus_3943#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence
                              [CCGCGTGAATGTGTTTCTGGATCAATTTCACAGCTCGATGGAACGGAAGAATGCAGCTACAGTAGCAACGCCGCCGAAGCCGAGCTGGAGTAGAGAGCTTTGCTAAATCATAATACTGGCTTATATCTACACACAATCACATACACACACACACACTACTCTTGATCTGCTTGCTGTAGCTCGATGTGCACGCCGCCCGCCACTGTCCAACGCCACCGGTAGTGAATTCTACCCCCGCAGAGAAAGAGTGTCGTTTGGGCAGAGCAGTCGATCGCTATTGCTGCACACATAGTACTCTGCACCATCGTACAACATCGATTTGTTCGTTTCATTTCGAATTGTAGGTGGCTCTGCTCAACCGTTGTTCTAGAAGAGGAAAAGAATGTTGTTTGCGCGTGTCTTTATATGTTTGTGTGATGTGATGTTTGTTTTGTGTGGTTGTTTGTTTTCGCGTTCTAAAATTAAAATTTACCCCAAATTTGTATATTTTCTCCCTTTATTTTCGATTGGATTTCTTGTTCTATTTCCTTTTGTTGTTTGTACTTTATAGGTTAATTTTGGTTTCTTTGTTTCTTTCTTTACTTCTTTTCTTTTTTTACAGCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTT]

[+] EMBL BM604963             [CCGCGTGAATGTGTTTCTGGATCAATTTCACAGCTCGATGGAACGGAAGAATGCAGCTACAGTAGCAACGCCGCCGAAGCCGAGCTGGAGTAGAGAGCTTTGCTAAATCATAATACTGGCTTATATCTACACACAATCACATACACACACACACACTACTCTTGATCTGCTTGCTGTAGCTCGATGTGCACGCCGCCCGCCACTGTCCAACGCCACCGGTAGTGAATTCTACCCCCGCAGAGAAAGAGTGTCGTTTGGGCAGAGCAGTCGATCGCTATTGCTGCACACATAGTACTCTGCACCATCGTACAACATCGATTTGTTCGTTTCATTTCGAATTGTAGGTGGCTCTGCTCAACCGTTGTTCTAGAAGAGGAAAAGAATGTTGTTTGCGCGTGTCTTTATATGTTTGTGTGATGTGATGTTTGTTTTGTGTGGTTGTTTGTTTTCGCGTTCTAAAATTAAAATTTACCCCAAATTTGTATATTTTCTCCCTTTATTTTCGATTGGATTTCTTGTTCTATTTCCTTTTGTTGTTTGTACTTTATAGGTTAATTTTGGTTTCTTTGTTTCTTTCTTTACTTCTTTTCTTTTTTTACAGCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTT]


>consensus_3943#1 CCGCGTGAATGTGTTTCTGGATCAATTTCACAGCTCGATGGAACGGAAGAATGCAGCTAC AGTAGCAACGCCGCCGAAGCCGAGCTGGAGTAGAGAGCTTTGCTAAATCATAATACTGGC TTATATCTACACACAATCACATACACACACACACACTACTCTTGATCTGCTTGCTGTAGC TCGATGTGCACGCCGCCCGCCACTGTCCAACGCCACCGGTAGTGAATTCTACCCCCGCAG AGAAAGAGTGTCGTTTGGGCAGAGCAGTCGATCGCTATTGCTGCACACATAGTACTCTGC ACCATCGTACAACATCGATTTGTTCGTTTCATTTCGAATTGTAGGTGGCTCTGCTCAACC GTTGTTCTAGAAGAGGAAAAGAATGTTGTTTGCGCGTGTCTTTATATGTTTGTGTGATGT GATGTTTGTTTTGTGTGGTTGTTTGTTTTCGCGTTCTAAAATTAAAATTTACCCCAAATT TGTATATTTTCTCCCTTTATTTTCGATTGGATTTCTTGTTCTATTTCCTTTTGTTGTTTG TACTTTATAGGTTAATTTTGGTTTCTTTGTTTCTTTCTTTACTTCTTTTCTTTTTTTACA GCCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3943#0      CCGATCGCCAGCGTCACCACTGAAGTCGCCGAGCAAGATACCGGGACTAGCCAGAAGGCC 60
consensus_3943#1      ------------------------------------------------------------
                                                                                  

consensus_3943#0      GGAAAACATTTCGTCCGAAAGCCGATCGCGGAGCACCTCGAAGCAGCGCGCCAACGCGAA 120
consensus_3943#1      ------------------------------------------------------------
                                                                                  

consensus_3943#0      AACACCGGAAACGCCCTCCGACCAGCCGCTAATCAAAAAAGTACCAATGAACAAAATACA 180
consensus_3943#1      ------------------------------------------------------------
                                                                                  

consensus_3943#0      GGTCGGTGGGGCACCATCTCCGAATCTGAAGGTCGTGAAGTCAAAGATCGGCTCGCTGGA 240
consensus_3943#1      ------------------------------------------------------------
                                                                                  

consensus_3943#0      AAATGCCAGCCACAAGCCGGGCGGTGGCAATGTGAAGATTGAAACGAAGAAGATCGACAT 300
consensus_3943#1      ------------------------------------------------------CCGCGT 6
                                                                            *  * *

consensus_3943#0      CAAGGCGGCCCCACGAATCGAAGCGA-AGAATGATGCGTACATACCGAAGGGTGGCGACA 359
consensus_3943#1      GAATGTGTTTC--TGGATCAATTTCACAGCTCGATG-GAACGGA--AGAATGCAGCTACA 61
                       ** * *   *   * *** *    * **   **** * **  *    *  *  ** ***

consensus_3943#0      AGAAGATCATCAGCACAAAGCTGCAGTGGAATGCAAAGCCCAAGATTGGGTCGTTGGATA 419
consensus_3943#1      GTAGCAACGCCGCC--GAAGCCGAGCTGGAGTAGAGAGCTTTG--CTAAATC-----ATA 112
                        *  * *  *  *   **** *   **** *  * ***       *   **     ***

consensus_3943#0      ATGCTAGCCACAAACCGGGCGGCGGGGACAAGCGCATCGAGTCGATCAAGACGGACTTTA 479
consensus_3943#1      ATACTGGCTTATATCTACAC-------ACAATCACATACACACACACACACTACTCTTGA 165
                      ** ** **    * *    *       **** * ***  *  *   **       *** *

consensus_3943#0      AGGAGCGGGCAAAACCGAAAATCGGTTCCAAGGATAACATCACGTACAAACCCGGCGGTG 539
consensus_3943#1      TCTGCTTGCTGTAGCTCGATGTGCACGCCGCCCGCCAC----TGTCCAACGCCACCGGTA 221
                             *    * *   *  *     **       **     ** ***  **  **** 

consensus_3943#0      GTGACGTGAAGATCGTACACCAGAAGCTAGACATCAAGGCGGAAAGTAAGATCGGCTCAC 599
consensus_3943#1      GTGA-------ATTCTACCCCCGCAG--AGAAAGAGTGTCGTTTGGGCAGAGCAG-TCGA 271
                      ****       **  *** ** * **  *** *    * **    *  *** * * **  

consensus_3943#0      TGGACAACCTCAAACACAAGCCGGGCGGCGGTGATAAAGAAGATCTTCGACGACAAGGAG 659
consensus_3943#1      TCGCTATTGCTGCACACATAGTACTCTGCACCATCGTACAACATC--GATTTGTTCGTTT 329
                      * *  *       *****       * **        * ** ***           *   

consensus_3943#0      TATCTGAAGAACATTGAACATCCGATCACGCCCAGTCCTTCCTCGCAGGAGTATCTGTAC 719
consensus_3943#1      CATTTCGA----ATTGTAGGT--GGCTCTGCTCAACCGTTGTTC-TAGAAGAG--GAAAA 380
                       ** *  *    **** *  *  *     ** **  * **  **  ** **       * 

consensus_3943#0      AAATTCTATTAGTATTAAACCTCCCCTGAAACCGTCTGACCAAACCGCAGCAGCAGCAGC 779
consensus_3943#1      GAATGTTGTTTGCGCGTGTCTTTATATGT--TTGTGTGAT---------GTGATGTTTGT 429
                       ***  * ** *       * *    **     ** ***          *        * 

consensus_3943#0      AGCAGCAGCACCTTCATCATCCCAGCCTTCCACCAAACTCTGCATGGCCGTGACGCGCGT 839
consensus_3943#1      TTTGTGTGGTTGTTTGTTTTCGCGTTCTAAAATTAAAATTTAC----CCCAAATTTGTAT 485
                             *    **  *  ** *   **   *  *** * * *    **   *   *  *

consensus_3943#0      ACGCTGCCAGCTTTGCTACTCCCAAAACGGGCTCCTCGATCTTCGTTTCTCTTCCGCTAG 899
consensus_3943#1      AT-TTTCTCCCTTTATTTTCGATTGGATTTCTTGTTCTATTTCCTTTTGTTGTTTGTACT 544
                      *   * *   ****  *         *     *  ** ** * * *** *  *  *    

consensus_3943#0      ATCTAGTTCGTGCTCTTCCAGTGTTTGTTGTGTTGTCTAGCAACAGCGTTCTTGCTCGCC 959
consensus_3943#1      TTATAGGT--TAATTTTGGTTTCTTTGTTTCTTTCTTTA-CTTCTTTTCTTTTTTTACAG 601
                       * *** *  *  * **    * ******   ** * ** *  *     * **  *    

consensus_3943#0      CCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTTCGTTTCATTGTT 1019
consensus_3943#1      CCAACCACTCCTGTACCTTTCTAAATTGGAATCGCGTTTTGTATGTTT------------ 649
                      ************************************************            

consensus_3943#0      ATCCAATTATCG 1031
consensus_3943#1      ------------
                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)