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Anopheles gambiae
cluster # 3947 cluster # 3947       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3947#0 length = 969 sequences # 1  
consensus_3947#1 length = 746 sequences # 2  

consensusID : consensus_3947#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 969
fasta sequence
                              [AGCAGAATTGCCCGAGGTAAACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGCCCGCTGGCTAGACGATCCGGTAGTCATGACGCTCCCGAACGTGGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTTGACGCTTCCGGCGTTGAAAGAAAAGNTGCAACGGAAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCTGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGTGCAGATTTACCGTGCGTTGGACCGTACGGCAAGGATGGGGACGTGGACCGGCCCTGTCCAGCCAGCCGATAGAGCCGTGACCAGTGGATCAGAGCTGTACGCCGCATCAGGAGTATAGTGGTGTGCGTTGCAGCTGAATACGAGCTGGGGAGGCGTATCGAGCTCGCTCAAACATTACACTGTCACCAAGNTCACCCAAGGGCAAGGGACAGANGGGGCCTGAGTTCCCATAANCGCACGGCCAACCAAGACGGANGNCAANACTGGNTGGGCGNGNCTCAGACAACGGGCCTGAGGTNCTAAACCCGGCAGGACCACCGAACAAAGTAACNTCCAAANCANAAGGNGTGCNATATACAATNGCNACCCNNNCGANGCAAATAAACAGAACGGTAGNNCACTAAANAAACCACAGTGNANACCNATGACAAACACGAACAGGGATAAAAANAAAGAGGATCGNAACTAAACAANNAAAAACGACANACAGAGANAAANNGGTNGGCCACCAACAGCCAGGCNANGGACAAACAGAATGGCAANTAGAGAAAAGCACAATNNAAACAGAAANACGGNACAGGGGGAACNCNGNGG]

[+] EMBL AL696457             [AGCAGAATTGCCCGAGGTAAACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGCCCGCTGGCTAGACGATCCGGTAGTCATGACGCTCCCGAACGTGGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTTGACGCTTCCGGCGTTGAAAGAAAAGNTGCAACGGAAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCTGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGTGCAGATTTACCGTGCGTTGGACCGTACGGCAAGGATGGGGACGTGGACCGGCCCTGTCCAGCCAGCCGATAGAGCCGTGACCAGTGGATCAGAGCTGTACGCCGCATCAGGAGTATAGTGGTGTGCGTTGCAGCTGAATACGAGCTGGGGAGGCGTATCGAGCTCGCTCAAACATTACACTGTCACCAAGNTCACCCAAGGGCAAGGGACAGANGGGGCCTGAGTTCCCATAANCGCACGGCCAACCAAGACGGANGNCAANACTGGNTGGGCGNGNCTCAGACAACGGGCCTGAGGTNCTAAACCCGGCAGGACCACCGAACAAAGTAACNTCCAAANCANAAGGNGTGCNATATACAATNGCNACCCNNNCGANGCAAATAAACAGAACGGTAGNNCACTAAANAAACCACAGTGNANACCNATGACAAACACGAACAGGGATAAAAANAAAGAGGATCGNAACTAAACAANNAAAAACGACANACAGAGANAAANNGGTNGGCCACCAACAGCCAGGCNANGGACAAACAGAATGGCAANTAGAGAAAAGCACAATNNAAACAGAAANACGGNACAGGGGGAACNCNGNGG]


>consensus_3947#0 AGCAGAATTGCCCGAGGTAAACACCAAGTCGGTACTCGATCAATCAATACGAATACTACA GGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCA GCTGATGCAGTGCATCATCCAGGCCCGCTGGCTAGACGATCCGGTAGTCATGACGCTCCC GAACGTGGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCT TGACGCTTCCGGCGTTGAAAGAAAAGNTGCAACGGAAAGTACGAGAATTTGGCCGCGACG TTAAGGCAGGAGTTTGAGGAGCCTGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCT GCCGTCGCTGAACGTGCAGATTTACCGTGCGTTGGACCGTACGGCAAGGATGGGGACGTG GACCGGCCCTGTCCAGCCAGCCGATAGAGCCGTGACCAGTGGATCAGAGCTGTACGCCGC ATCAGGAGTATAGTGGTGTGCGTTGCAGCTGAATACGAGCTGGGGAGGCGTATCGAGCTC GCTCAAACATTACACTGTCACCAAGNTCACCCAAGGGCAAGGGACAGANGGGGCCTGAGT TCCCATAANCGCACGGCCAACCAAGACGGANGNCAANACTGGNTGGGCGNGNCTCAGACA ACGGGCCTGAGGTNCTAAACCCGGCAGGACCACCGAACAAAGTAACNTCCAAANCANAAG GNGTGCNATATACAATNGCNACCCNNNCGANGCAAATAAACAGAACGGTAGNNCACTAAA NAAACCACAGTGNANACCNATGACAAACACGAACAGGGATAAAAANAAAGAGGATCGNAA CTAAACAANNAAAAACGACANACAGAGANAAANNGGTNGGCCACCAACAGCCAGGCNANG GACAAACAGAATGGCAANTAGAGAAAAGCACAATNNAAACAGAAANACGGNACAGGGGGA ACNCNGNGG



consensusID : consensus_3947#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 746
fasta sequence
                              [ACTACTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAAGCTGATTCGGGCCGGGTGTGTCTTGCTGGAGGAAGATAACAGATCGCTGATGGCGACATCGATGGGGCGCATTTCCTCGTACTATTACCTATCCCACATCACCATGCGTCACTTTGCTGATACGCTACGGCACGACATGAGCATGGAAGAGTTGCTGCGCGCGATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGCGCCACAATGAAGATTTGTATAATGCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATCCACTATCGGTGGACAATCCGCACACTTATCGCGCTTGCCGCTACCGAACTCTGATTACNCGCACAGACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGNNCGCTGNGCTAGACGATCCGGTAGTCATGACGCTCCCGNNCGTGGGAAGCCTATNATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGGCGTTGAAAGAAAAATGCAACCGGAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGTGCAGATTTCCGTGCGTGGACCGTACN]

[+] EMBL BX619429             [ACTACTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAAGCTGATTCGGGCCGGGTGTGTCTTGCTGGAGGAAGATAACAGATCGCTGATGGCGACATCGATGGGGCGCATTTCCTCGTACTATTACCTATCCCACATCACCATGCGTCACTTTGCTGATACGCTACGGCACGACATGAGCATGGAAGAGTTGCTGCGCGCGATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGCGCCACAATGAAGATTTGTATAATGCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATCCACTATCGGTGGACAATCCGCACACTTATCGCGCTTGCCGCTACCGAACTCTGATTACNCGCACAGACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGNNCGCTGNGCTAGACGATCCGGTAGTCATGACGCTCCCGNNCGTGGGAAGCCTATNATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGG                                                                                                                                                   ]
[+] EMBL BX621138             [    CTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAAGCTGATTCGGGCCGGGTGTGTCTTGCTGGAGGAAGATAACAGATCGCTGATGGCGACATCGATGGGGCGCATTTCCTCGTACTATTACCTATCCCACATCACCATGCGTCACTTTGCTGATACGCTACGGCACGACATGAGCATGGAAGAGTTGCTGCGCGCGATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGCGCCACAATGAAGATTTGTATAATGCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATCCACTATCGGTGGACAATCCGCACACTTATCGCGCTTGCCGCTACCGAACTCTGATTAC GGCACAGACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGCCCGCTG GCTAGACGATCCGGTAGTCATGACGCTCCCGAACGT GGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGGCGTTGAAAGAAAAATGCAACCGGAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGTGCAGATTTCCGTGCGTGGACCGTACN]


>consensus_3947#1 ACTACTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAAGCTGATTCGGGCCGGGTGTG TCTTGCTGGAGGAAGATAACAGATCGCTGATGGCGACATCGATGGGGCGCATTTCCTCGT ACTATTACCTATCCCACATCACCATGCGTCACTTTGCTGATACGCTACGGCACGACATGA GCATGGAAGAGTTGCTGCGCGCGATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGC GCCACAATGAAGATTTGTATAATGCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATC CACTATCGGTGGACAATCCGCACACTTATCGCGCTTGCCGCTACCGAACTCTGATTACNC GCACAGACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACA TTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCA TCATCCAGGNNCGCTGNGCTAGACGATCCGGTAGTCATGACGCTCCCGNNCGTGGGAAGC CTATNATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGGC GTTGAAAGAAAAATGCAACCGGAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTT TGAGGAGCCGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGT GCAGATTTCCGTGCGTGGACCGTACN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3947#0      AGCAGAATTGCCCGAGGTAAACACCAAGTCGGTACTCGATCAATCAATACGAATACTACA 60
consensus_3947#1      ------------------------------------------------------------
                                                                                  

consensus_3947#0      GGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCA 120
consensus_3947#1      ------------------------------------------------------------
                                                                                  

consensus_3947#0      GCTGATGCAGTGCATCATCCAGGCCCGCTGGCTAGACGATCCGGTAGTCATGACGCTCCC 180
consensus_3947#1      ------------------------------------------------------------
                                                                                  

consensus_3947#0      GAACGTGGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCT 240
consensus_3947#1      ----------------ACTACTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAA---- 40
                                      * * *  *       ***    * *** *   **    *     

consensus_3947#0      TGACGCTTCCGGCGTTGAAAGAAAAGNTGCAACGGAAAGTACGAGAAT-TTGGCCGCGAC 299
consensus_3947#1      -GCTGATTCGGGCCGGGTGTGTCTTGCTGGA--GGAAGATAACAGATCGCTGATGGCGAC 97
                       *  * *** ***   *   *    * ** *  ****  **  ***    **   *****

consensus_3947#0      GTTAAGGCAGGAGTTTGAGGAGCCTGGAAATTGAGCAGATTTACAAGGTGATATGTGAGC 359
consensus_3947#1      ATCGATGGGGCGCATTTC----CTCGTACTATTACCTATCCCACATCACCATGCGTCA-- 151
                       *  * *  *    **      *  * *   * * *      ***     **  ** *  

consensus_3947#0      TGCCGTCGCTGA-ACGTGCAGATTTACCGTGCGTTGGACCGTACGGCAAGGATGGGGACG 418
consensus_3947#1      ---CTTTGCTGATACGCTACGGCACGACATGAGCATGGAAGAGTTGC-----TGCGCGCG 203
                         * * ***** ***    *      * ** *   *   *    **     ** *  **

consensus_3947#0      TGGACCGGCCCTGTCCAGCCAGCCGATAGAGCCGTGACCAGTGGATCAGAGCTGTACGCC 478
consensus_3947#1      ATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGCGCCACAATGAAGATTTGTATAAT 263
                        * * *   * * * **   *  **     * ***  *        ***  ****    

consensus_3947#0      GCATCAGGAGTATAGTGGTGTGCGTTGCAGCTGAATACGAGCTGGGGAGGCGTATCGAGC 538
consensus_3947#1      GCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATCCACTATCGGTGGACAATCCGCAC 323
                      **      **   *   **** *  ** ** *  ** *    * **  * *    **  *

consensus_3947#0      TCGC-TCAAACATTACACTGTC--ACCAAGNTCACCCAAGGGCAAGGGACAGANGGGGCC 595
consensus_3947#1      ACTTATCGCGCTTGCCGCTACCGAACTCTGATTACNC--GCACAGACACCAAGTCGGTAC 381
                       *   **   * *  * **  *  **   * * ** *  *  **     **    **  *

consensus_3947#0      TGAGTT--CCCATAANCGCACGGCCAACCAAGACGGANGNCAANACTGGNTGGGCGNGNC 653
consensus_3947#1      TCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGC 441
                      *   *    * ***     **  *   *** *   **    *   * *   ***   * *

consensus_3947#0      TCAGACAACGGGCCTGAGGTNCTAAACCCGGCAGGACCACCGAACAAAGTAACNTCCAAA 713
consensus_3947#1      TT--GCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGNNCG-CTGNG 498
                      *    ****   **** **    *    * *  * *   *   *   **   *  *    

consensus_3947#0      NCANAAGGNGTGCNATATACAATNGCNACCCNNNCGANGCAAATAAACAGAACGGTAGNN 773
consensus_3947#1      CTAGACGATCCGGTAGTCATGACG--CTCCCGNNCGTGGGAAGCCTATNATGCGGCT-AT 555
                        * * *    *  *   *  *      *** ****  * **    *     ***     

consensus_3947#0      CACTAAANAAACCACAGTGNANAC-CNATGACAAACACGAACAGGGATAAAAANAAAGAG 832
consensus_3947#1      CTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGGCGTTGAAAGAAAAATG 615
                      *   *   * *  * *    *    * **  *  ** *   * * * * ***  ***  *

consensus_3947#0      -GATCGNAACTAAACAANNAAAAACGACANACAGAGANAAANNGGTNGGCCACCAACAGC 891
consensus_3947#1      CAACCGGAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCGGAAAT 675
                        * ** ** **    *       **  *     **  *      *  *   **   *  

consensus_3947#0      CAGGCNANGGACAAACAGAATGGCAANTAGAGAAAAGCACAATNNAAACAGAAANACGGN 951
consensus_3947#1      TGAGCA---GATTTACAAGGTGATATGT---GAGCTGCCGTCGCTGAACGTGCAGATTTC 729
                         **    **   ***   **  *  *   **   **        ***    * *    

consensus_3947#0      ACAGGGGGAACNCNGNGG 969
consensus_3947#1      CGTGCGTGGACCGTACN- 746
                         * * * **       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)