These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [CCGCGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTTTCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTATACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCTCACCGTGTCTACACTAACGGGTGCGTGTTTGTGTATACAGTCAGTTTCTTCAGGAATCTTCTCGCACGGCCGGTAGTAGCATTCTCGTCCTCTACACACGGTGCAAAGTGCGTCAGCAGCAGGAGAAATATCTTGAAGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGAAAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTTCCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTCCGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGTCCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGGTGTATTGTTGTGTACAGTGCGTTTTGGGGGGGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAAAA] [+] EMBL BM599585 [CCGCGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTTTCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTATACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCTCACCGTGTCTACACTAACGGGTGCGTGTTTGTGTATACAGTCAGTTTCTTCAGGAATCTTCTCGCACGGCCGGTAGTAGCATTCTCGTCCTCTACACACGGTGCAAAGTGCGTCAGCAGCAGGAGAAATATCTTGAAGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGAAAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTTCCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTCCGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGTCCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGGTGTATTGTTGTGTACAGTGCGTTTTGGGGGGGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAAAA] consensusID : consensus_3948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 640 fasta sequence [CCGCTTACGCGAACGGAACGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTTTCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTATACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCTCACCGTGTCTACACTAACGGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGAAAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTTCCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTCCGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGTCCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGTGTATTGTTGTGTACAGTGCGTTTTGGGGTGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAAAAAAGTTTGAAAAAGCTGTGAATTAAAAGGGTGAAAATTTTGGTGTTGTTTTGTCCCCACCGAAGCGTGAAAATAGTAAGCGTGTGAAAAACATCCCCGG] [+] EMBL BM641880 [CCGCTTACGCGAACGGAACGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTTTCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTATACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCTCACCGTGTCTACACTAACGGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGAAAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTTCCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTCCGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGTCCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGTGTATTGTTGTGTACAGTGCGTTTTGGGGTGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAAAAAAGTTTGAAAAAGCTGTGAATTAAAAGGGTGAAAATTTTGGTGTTGTTTTGTCCCCACCGAAGCGTGAAAATAGTAAGCGTGTGAAAAACATCCCCGG] [+] EMBL BM641473 [ cCGGAACGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTTTCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTATACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCTCACCGTGTCTACACTAACGGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGAAAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTTCCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTCCGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGTCCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGTGTATTGTTGTGTACAGTGCGTTTTGGGGTGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAAAAAAGTTTGAAAAAGCTGTGAATTAAAAGGGTGAAAA TTTGGTGTTGTTTTGTCCCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3948#0 ---------------CCGCGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTT 45 consensus_3948#1 CCGCTTACGCGAACGGAACGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTT 60 ****************************************** consensus_3948#0 TCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTAT 105 consensus_3948#1 TCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTAT 120 ************************************************************ consensus_3948#0 ACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCT 165 consensus_3948#1 ACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCT 180 ************************************************************ consensus_3948#0 CACCGTGTCTACACTAACGGGTGCGTGTTTGTGTATACAGTCAGTTTCTTCAGGAATCTT 225 consensus_3948#1 CACCGTGTCTACACTAACGG---------------------------------------- 200 ******************** consensus_3948#0 CTCGCACGGCCGGTAGTAGCATTCTCGTCCTCTACACACGGTGCAAAGTGCGTCAGCAGC 285 consensus_3948#1 ------------------------------------------------------------ consensus_3948#0 AGGAGAAATATCTTGAAGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGA 345 consensus_3948#1 ------------------CATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGA 242 ****************************************** consensus_3948#0 AAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTT 405 consensus_3948#1 AAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTT 302 ************************************************************ consensus_3948#0 CCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTC 465 consensus_3948#1 CCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTC 362 ************************************************************ consensus_3948#0 CGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGT 525 consensus_3948#1 CGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGT 422 ************************************************************ consensus_3948#0 CCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGGTGTATTGT 585 consensus_3948#1 CCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAG-TGTATTGT 481 *************************************************** ******** consensus_3948#0 TGTGTACAGTGCGTTTTGGGGGGGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAA 645 consensus_3948#1 TGTGTACAGTGCGTTTTGGGGTGG-TGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAA 540 ********************* ** *********************************** consensus_3948#0 AA---------------------------------------------------------- 647 consensus_3948#1 AAAAGTTTGAAAAAGCTGTGAATTAAAAGGGTGAAAATTTTGGTGTTGTTTTGTCCCCAC 600 ** consensus_3948#0 ---------------------------------------- consensus_3948#1 CGAAGCGTGAAAATAGTAAGCGTGTGAAAAACATCCCCGG 640 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||