These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1344 fasta sequence [TGTTGTGGTGTAGCTTAAGACGATTTTGGTATCGTATAGTTGAGTGGAAGCAGATTTGAAATCGTTTTGTCGTACATTTGTCAGAGAACCGGCTCAAAAATGAACTCATACTTTGAACAGACCGGATTCTATGGACATCCTCACCAAGCCGCGGCCGGAATGATGACAACGACAGGAACCCATCATGACCAAACAACGGCTGCAGCAGCCGCGGCTTATAGAGGGTTTCCACTTTCTCTCGGAATGTCCCCGTATACGAACCATCACCTGCACCAAACACGCACAGCCCAAGAGTCACCATATGATGCGAGCATACAGGCCGCGTGTAAACAAATTTACGAGGGCTCCTACAGTTCCAAAGATTGTGGAACGAAAGGCACCAGTGGAAACAACGGCACGGACACAAGTAACGGCTACAAAGATGTGTGGAATGCAAACAGTGGCGCAACTAATGGGGCGACCACTGGTGCCACTGGTAGTAACGTACCTGCCCAACAAAACAGTTCTGTTCCGGTCAGACCTTCCGCATGCACGCCAGATTCGCGCGTTGGGGGCTATATTGACGCATCTGGAGGGAGCCCAGTGAGTCGGGCTGGTTCGGCTGCTGCCGCAGCTGGCGTACCCGGGTCATGGAATACCAATCAATGTTCACTAACTGGGTCAACTGGTGGACAAGCTGCTCCTTCCACTGGACTGCATCAGTCCAATCACACTTTTTATCCCTGGATGGCTATTGCAGGTAAGAGATACTCAGAATCTCTTGCGGGCACTCTTCTACCAGACTGGATAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCAAACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGATTGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCGCCGAATGAAGCTAAAGAAGGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACAGGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAACTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAGAATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTTCTTTATTTCATCATATAATACAGGTAGGCATAATATATCCATTTTGTTTGGTTGTGTAGCCTCAGAGGCACTACAATATTTTTTAAACTGTTGTATAAGTTTTTTGCAATCTTAAAGACTGTTTATCTGTTCCCAGTGTTTATCT] [+] EMBL AF080562 [TGTTGTGGTGTAGCTTAAGACGATTTTGGTATCGTATAGTTGAGTGGAAGCAGATTTGAAATCGTTTTGTCGTACATTTGTCAGAGAACCGGCTCAAAAATGAACTCATACTTTGAACAGACCGGATTCTATGGACATCCTCACCAAGCCGCGGCCGGAATGATGACAACGACAGGAACCCATCATGACCAAACAACGGCTGCAGCAGCCGCGGCTTATAGAGGGTTTCCACTTTCTCTCGGAATGTCCCCGTATACGAACCATCACCTGCACCAAACACGCACAGCCCAAGAGTCACCATATGATGCGAGCATACAGGCCGCGTGTAAACAAATTTACGAGGGCTCCTACAGTTCCAAAGATTGTGGAACGAAAGGCACCAGTGGAAACAACGGCACGGACACAAGTAACGGCTACAAAGATGTGTGGAATGCAAACAGTGGCGCAACTAATGGGGCGACCACTGGTGCCACTGGTAGTAACGTACCTGCCCAACAAAACAGTTCTGTTCCGGTCAGACCTTCCGCATGCACGCCAGATTCGCGCGTTGGGGGCTATATTGACGCATCTGGAGGGAGCCCAGTGAGTCGGGCTGGTTCGGCTGCTGCCGCAGCTGGCGTACCCGGGTCATGGAATACCAATCAATGTTCACTAACTGGGTCAACTGGTGGACAAGCTGCTCCTTCCACTGGACTGCATCAGTCCAATCACACTTTTTATCCCTGGATGGCTATTGCAGGTAAGAGATACTCAGAATCTCTTGCGGGCACTCTTCTACCAGACTGGATAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCAAACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGATTGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCGCCGAATGAAGCTAAAGAAGGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACAGGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAACTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAGAATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTTCTTTATTTCATCATATAATACAGGTAGGCATAATATATCCATTTTGTTTGGTTGTGTAGCCTCAGAGGCACTACAATATTTTTTAAACTGTTGTATAAGTTTTTTGCAATCTTAAAGACTGTTTATCTGTTCCCAGTGTTTATCT] consensusID : consensus_3950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1084 fasta sequence [TTGTCGTACATTTGTCAGAGAACCGGCTCAAAAATGAACTCATACTTTGAACAGACCGGATTCTATGGACATCCTCACCAAGCCGCGGCCGGAATGATGACAACGACAGGAACCCATCATGACCAAACAACGGCTGCAGCAGCCGCGGCTTATAGAGGGTTTCCACTTTCTCTCGGAATGTCCCCGTATACGAACCATCACCTGCACCAAACACGCACAGCCCAAGAGTCACCATATGATGCGAGCATACAGGCCGCGTGTAAACAAATTTACGAGGGCTCCTACAGTTCCAAAGATTGTGGAACGAAAGGCACCAGTGGAAACAACGGCACGGACACAAGTAACGGCTACAAAGATGTGTGGAATGCAAACAGTGGCGCAACTAATGGGGCGACCACTGGTGGCACTGGTAGTAACGTACCTGCCCAACAAAACAGTTCTGTTCCGGTCAGACCTTCCGCATGCACGCCAGATTCGCGCGTTGGGGGCTATATTGACGCATCTGGAGGGAGCCCAGTGAGTCGGGCTGGTTCGGCTGCTGCCGCAACTGGCGTACCCGGGTCATGGAATACCAATCAATGTTCACTAACTGGGTCAACTGGTGGACAAGCTGCTCCTTCCACTGGACTGCATCAGTCCAATCACACTTTTTATCCCTGGATGGCTATTGCAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCAAACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGATTGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCGCCGAATGAAGCTAAAGAAAGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACAGGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAACTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAGAATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTTCT] [+] EMBL AF080563 [TTGTCGTACATTTGTCAGAGAACCGGCTCAAAAATGAACTCATACTTTGAACAGACCGGATTCTATGGACATCCTCACCAAGCCGCGGCCGGAATGATGACAACGACAGGAACCCATCATGACCAAACAACGGCTGCAGCAGCCGCGGCTTATAGAGGGTTTCCACTTTCTCTCGGAATGTCCCCGTATACGAACCATCACCTGCACCAAACACGCACAGCCCAAGAGTCACCATATGATGCGAGCATACAGGCCGCGTGTAAACAAATTTACGAGGGCTCCTACAGTTCCAAAGATTGTGGAACGAAAGGCACCAGTGGAAACAACGGCACGGACACAAGTAACGGCTACAAAGATGTGTGGAATGCAAACAGTGGCGCAACTAATGGGGCGACCACTGGTGGCACTGGTAGTAACGTACCTGCCCAACAAAACAGTTCTGTTCCGGTCAGACCTTCCGCATGCACGCCAGATTCGCGCGTTGGGGGCTATATTGACGCATCTGGAGGGAGCCCAGTGAGTCGGGCTGGTTCGGCTGCTGCCGCAACTGGCGTACCCGGGTCATGGAATACCAATCAATGTTCACTAACTGGGTCAACTGGTGGACAAGCTGCTCCTTCCACTGGACTGCATCAGTCCAATCACACTTTTTATCCCTGGATGGCTATTGCAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCAAACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGATTGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCGCCGAATGAAGCTAAAGAAAGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACAGGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAACTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAGAATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTTCT] consensusID : consensus_3950#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CCGGAAGGCTCGTGGCATTGTCATACTCTCACGGTTTTACGAGTTTTACGACACTTTTATGCGAGATAGAATGGGACATAAAATCACGGGAAGTTTTCATTTGATAGTCGTATCGTGCAGCTTCCTTTTCTGACTGGCCTACCACAGAATCGTCCTCCGAAGACAAAGAGAATCCATAAGCAGTAGTAAACAAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCAAACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGATTGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCGCCGAATGAAGCTAAAGAAGGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACAGGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAACTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAGAATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTTCTTTATTTCATCATATAATACAGGTAGGCATAATATATCCATTTTGTTTGGTTGTGTAGCCTCAGAGGCACTACAATATTTTTTAAA] [+] EMBL BM582893 [CCGGAAGGCTCGTGGCATTGTCATACTCTCACGGTTTTACGAGTTTTACGACACTTTTATGCGAGATAGAATGGGACATAAAATCACGGGAAGTTTTCATTTGATAGTCGTATCGTGCAGCTTCCTTTTCTGACTGGCCTACCACAGAATCGTCCTCCGAAGACAAAGAGAATCCATAAGCAGTAGTAAACAAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCAAACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGATTGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCGCCGAATGAAGCTAAAGAAGGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACAGGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAACTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAGAATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTTCTTTATTTCATCATATAATACAGGTAGGCATAATATATCCATTTTGTTTGGTTGTGTAGCCTCAGAGGCACTACAATATTTTTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3950#0 TGTTGTGGTGTAGCTTAAGACGATTTTGGTATCGTATAGTTGAGTGGAAGCAGATTTGAA 60 consensus_3950#1 ------------------------------------------------------------ consensus_3950#2 ------------------------------------------------------------ consensus_3950#0 ATCGTTTTGTCGTACATTTGTCAGAGAACCGGCTCAAAAATGAACTCATACTTTGAACAG 120 consensus_3950#1 ------TTGTCGTACATTTGTCAGAGAACCGGCTCAAAAATGAACTCATACTTTGAACAG 54 consensus_3950#2 ------------------------------------------------------------ consensus_3950#0 ACCGGATTCTATGGACATCCTCACCAAGCCGCGGCCGGAATGATGACAACGACAGGAACC 180 consensus_3950#1 ACCGGATTCTATGGACATCCTCACCAAGCCGCGGCCGGAATGATGACAACGACAGGAACC 114 consensus_3950#2 ------------------------------------------------------------ consensus_3950#0 CATCATGACCAAACAACGGCTGCAGCAGCCGCGGCTTATAGAGGGTTTCCACTTTCTCTC 240 consensus_3950#1 CATCATGACCAAACAACGGCTGCAGCAGCCGCGGCTTATAGAGGGTTTCCACTTTCTCTC 174 consensus_3950#2 ------------------------------------------------------------ consensus_3950#0 GGAATGTCCCCGTATACGAACCATCACCTGCACCAAACACGCACAGCCCAAGAGTCACCA 300 consensus_3950#1 GGAATGTCCCCGTATACGAACCATCACCTGCACCAAACACGCACAGCCCAAGAGTCACCA 234 consensus_3950#2 ------------------------------------------------------------ consensus_3950#0 TATGATGCGAGCATACAGGCCGCGTGTAAACAAATTTACGAGGGCTCCTACAGTTCCAAA 360 consensus_3950#1 TATGATGCGAGCATACAGGCCGCGTGTAAACAAATTTACGAGGGCTCCTACAGTTCCAAA 294 consensus_3950#2 ------------------------------------------------------------ consensus_3950#0 GATTGTGGAACGAAAGGCACCAGTGGAAACAACGGCACGGACACAAGTAACGGCTACAAA 420 consensus_3950#1 GATTGTGGAACGAAAGGCACCAGTGGAAACAACGGCACGGACACAAGTAACGGCTACAAA 354 consensus_3950#2 ------------------------------------------------------------ consensus_3950#0 GATGTGTGGAATGCAAACAGTGGCGCAACTAATGGGGCGACCACTGGTGCCACTGGTAGT 480 consensus_3950#1 GATGTGTGGAATGCAAACAGTGGCGCAACTAATGGGGCGACCACTGGTGGCACTGGTAGT 414 consensus_3950#2 ------------------------------------------------------------ consensus_3950#0 AACGTACCTGCCCAACAAAACAGTTCTGTTCCGGTCAGACCTTCCGCATGCACGCCAGAT 540 consensus_3950#1 AACGTACCTGCCCAACAAAACAGTTCTGTTCCGGTCAGACCTTCCGCATGCACGCCAGAT 474 consensus_3950#2 -----------------------------------------------------------C 1 consensus_3950#0 TCGCGCGTTGGGGGCTATATTGACGCATCTGGAGGGAGCCCAGTGAGTCGGGCTGGTTCG 600 consensus_3950#1 TCGCGCGTTGGGGGCTATATTGACGCATCTGGAGGGAGCCCAGTGAGTCGGGCTGGTTCG 534 consensus_3950#2 CGGAAGGCTCGTGGC---ATTGTCATACTCTCACG--GTTTTACGAGTT----TTACGAC 52 * * * * *** **** * * * * * **** * consensus_3950#0 GCTGCTGCCGCAGCTGGCGTACCCGGGTCATGGAATACCAATCAATGTTCACTAACTGGG 660 consensus_3950#1 GCTGCTGCCGCAACTGGCGTACCCGGGTCATGGAATACCAATCAATGTTCACTAACTGGG 594 consensus_3950#2 ACTTTTATGCGAGATAGAAT----GGGACATAAAATCACGGGAAGTTTTCATTTGATAG- 107 ** * * * * * *** *** *** * * * **** * * * consensus_3950#0 TCAACTGGTGGACAAGCTGCTCCTTCCACTGGACTGCATCAGTCCAATCACACTTTTTAT 720 consensus_3950#1 TCAACTGGTGGACAAGCTGCTCCTTCCACTGGACTGCATCAGTCCAATCACACTTTTTAT 654 consensus_3950#2 TCGTATCGTG--CAGCTTCCTTTTCTGACTGGCCTACCACAG---AATCGTCCTCCGAAG 162 ** * *** ** * ** * ***** ** * *** **** ** * consensus_3950#0 CCCTGGATGG-CTATTGCAGGTAAGAGATACTCAGAATCTCTTGCGGGCACTCTTCTACC 779 consensus_3950#1 CCCTGGATGG-CTATTGCAGGT-------------------------------------- 675 consensus_3950#2 ACAAAGAGAATCCATAAGCAGTAGTAAACA------------------------------ 192 * ** * ** ** consensus_3950#0 AGACTGGATAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCA 839 consensus_3950#1 -------------GCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCA 722 consensus_3950#2 ---------AGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCA 243 *********************************************** consensus_3950#0 AACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGAT 899 consensus_3950#1 AACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGAT 782 consensus_3950#2 AACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGAT 303 ************************************************************ consensus_3950#0 TGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCG 959 consensus_3950#1 TGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCG 842 consensus_3950#2 TGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCG 363 ************************************************************ consensus_3950#0 CCGAATGAAGCTAAAGAAGGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACA 1019 consensus_3950#1 CCGAATGAAGCTAAAGAAAGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACA 902 consensus_3950#2 CCGAATGAAGCTAAAGAAGGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACA 423 ****************** ***************************************** consensus_3950#0 GGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAA 1079 consensus_3950#1 GGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAA 962 consensus_3950#2 GGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAA 483 ************************************************************ consensus_3950#0 CTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAG 1139 consensus_3950#1 CTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAG 1022 consensus_3950#2 CTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAG 543 ************************************************************ consensus_3950#0 AATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTT 1199 consensus_3950#1 AATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTT 1082 consensus_3950#2 AATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTT 603 ************************************************************ consensus_3950#0 CTTTATTTCATCATATAATACAGGTAGGCATAATATATCCATTTTGTTTGGTTGTGTAGC 1259 consensus_3950#1 CT---------------------------------------------------------- 1084 consensus_3950#2 CTTTATTTCATCATATAATACAGGTAGGCATAATATATCCATTTTGTTTGGTTGTGTAGC 663 ** consensus_3950#0 CTCAGAGGCACTACAATATTTTTTAAACTGTTGTATAAGTTTTTTGCAATCTTAAAGACT 1319 consensus_3950#1 ------------------------------------------------------------ consensus_3950#2 CTCAGAGGCACTACAATATTTTTTAAA--------------------------------- 690 consensus_3950#0 GTTTATCTGTTCCCAGTGTTTATCT 1344 consensus_3950#1 ------------------------- consensus_3950#2 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||