These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 929 fasta sequence [AGCAGAATCCCGCNGGTTNAATGTCTCGTTTGTGAGACACTTGCAACTGGTCNTACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCCGGCATGGGTTCACCTTCAATGGGAAGGCGTGCATGCAGGACTACTCGAGCAAAATTCGTGTGCAACCCCTTTGCGAGTGTAGGAAACATTGTTAGGAATGTATCGTTTGTTATGGTGTCGTGTGTTAGTGTGTTGAAACATTCCTTTCCTGAATCATACAGTATGGCAGCTGTATAAACTTGTTGCTGGAACATANCATAATCACATGCACATAGTGACATACAGTGTGCATGGTTGCAACATGCATCGCTTGTNNTTTCTCAACACTGCTTAACTTTNACAAGCTANCTCAAACATTGTTACCCGCGCAAACACTGTTTCACAAACATAAGGCTACGAGCACGTGCAGCGAACAAACGGCACGGGGCGCTATACANAGGGGTGTAGCTTTCACTTACACGTTCCTGTAAGTAACTGCTAGACAGGGGTCGTATCAACATTGCATAAACTTGCATNGTAAGANATACTGCTGGTCACGGTACANCNNATAGGGACCACAGTTCTCCTCAGGAGNGTATAGNNAACCGTCGAGGCCACNGCNCGTACCGTCNCAAAACCAGTTTCTACTTACAGCTTANCTAACGCTGGTAATTCGCGNGGAACNCCATTGACTTTGCCAAACTAGGACGCGAACTCTAAAAAACACGTAATGATTGCATNTGGTGANCANACANCGACTGTCAAGCATCACTTGCTGGGATTACCGGACTACCCAGCACACGGCANGNTCAAGNCACTGTNTTAAAAAATCCCCACGGNNTCAACAAGCGTTTAACAACCCNTCTACCACACATCATACCACCGGGGAGACTAACACAGCGACAAGGATTATGAACAA] [+] EMBL AL929951 [AGCAGAATCCCGCNGGTTNAATGTCTCGTTTGTGAGACACTTGCAACTGGTCNTACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCCGGCATGGGTTCACCTTCAATGGGAAGGCGTGCATGCAGGACTACTCGAGCAAAATTCGTGTGCAACCCCTTTGCGAGTGTAGGAAACATTGTTAGGAATGTATCGTTTGTTATGGTGTCGTGTGTTAGTGTGTTGAAACATTCCTTTCCTGAATCATACAGTATGGCAGCTGTATAAACTTGTTGCTGGAACATANCATAATCACATGCACATAGTGACATACAGTGTGCATGGTTGCAACATGCATCGCTTGTNNTTTCTCAACACTGCTTAACTTTNACAAGCTANCTCAAACATTGTTACCCGCGCAAACACTGTTTCACAAACATAAGGCTACGAGCACGTGCAGCGAACAAACGGCACGGGGCGCTATACANAGGGGTGTAGCTTTCACTTACACGTTCCTGTAAGTAACTGCTAGACAGGGGTCGTATCAACATTGCATAAACTTGCATNGTAAGANATACTGCTGGTCACGGTACANCNNATAGGGACCACAGTTCTCCTCAGGAGNGTATAGNNAACCGTCGAGGCCACNGCNCGTACCGTCNCAAAACCAGTTTCTACTTACAGCTTANCTAACGCTGGTAATTCGCGNGGAACNCCATTGACTTTGCCAAACTAGGACGCGAACTCTAAAAAACACGTAATGATTGCATNTGGTGANCANACANCGACTGTCAAGCATCACTTGCTGGGATTACCGGACTACCCAGCACACGGCANGNTCAAGNCACTGTNTTAAAAAATCCCCACGGNNTCAACAAGCGTTTAACAACCCNTCTACCACACATCATACCACCGGGGAGACTAACACAGCGACAAGGATTATGAACAA] consensusID : consensus_3951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 878 fasta sequence [CCNAGCAGAATTCCCGAGGTTACACTTTTGTCATACTACAATGAAGACGCGCTCGTACGTGCTGCTAATTGCATTTCTGCTGATAGCTGTGCACGTTTCCACAGGCTTTCCCACCGANCGATCATCATTCGTCATTGTGCTGCAAGCAGTGTCTCGTTTGTGAGACCACTTGCAAACTGGTCGACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCGGATGGGTTCACCTTCAATGGGAAGGCGTGCATGCAGGACTANTCGAGCAAAATTCGTGTGCAACCCCCTTTGCGAGTGTAGGGAAACATTGTTAGGGAACTGTTCGTTCTGTTTGGGTGTCGTGTGTTAGGTGTGGTGAAAACCATTTCCTTTCCTGAAATCATACCAAGGTATGGGCCACAGTGGTATAAAACTTGGTTGGCCTCGGGCAAAATTAACATAAATCAACATTGAACCATTAGGTGGAACATTACAAGTGGTGCATTGGGTCTTGCGACAAANTCGATCGGTTGTATCTTAAAAAATGGCCTTAAACTTTTTATACCACAGGCTTAACCTCAAAAACATTGGTTCCCCGNCGAAAAAACCTTCGTTTCCAACCACACATAAAGGGGCTTACCGAANGCCACGTGCAANCCCGAAACAAAACGACAGGGGCCGCTTATTACACACAAGGGGTTGTCGCNTTTACCAACCTTTTACCCACGTTTCCCTGTACAAGGTTAACCGCTAAGGANCAGGGGTTCCGTTCAACATGAATAAACTTGCAATTGTAACGAGTTGTCNTCTGCTGAGTCGGTTGTTCAAGATTATGGGGACCCACAGTCTCTCCCTCAAGAGGGTTGCTTCCCGTTCGGCCAAGCTACAGATCGAAACA] [+] EMBL AL696523 [CCNAGCAGAATTCCCGAGGTTACACTTTTGTCATACTACAATGAAGACGCGCTCGTACGTGCTGCTAATTGCATTTCTGCTGATAGCTGTGCACGTTTCCACAGGCTTTCCCACCGANCGATCATCATTCGTCATTGTGCTGCAAGCAGTGTCTCGTTTGTGAGACCACTTGCAAACTGGTCGACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCGGATGGGTTCACCTTCAATGGGAAGGCGTGCATGCAGGACTANTCGAGCAAAATTCGTGTGCAACCCCCTTTGCGAGTGTAGGGAAACATTGTTAGGGAACTGTTCGTTCTGTTTGGGTGTCGTGTGTTAGGTGTGGTGAAAACCATTTCCTTTCCTGAAATCATACCAAGGTATGGGCCACAGTGGTATAAAACTTGGTTGGCCTCGGGCAAAATTAACATAAATCAACATTGAACCATTAGGTGGAACATTACAAGTGGTGCATTGGGTCTTGCGACAAANTCGATCGGTTGTATCTTAAAAAATGGCCTTAAACTTTTTATACCACAGGCTTAACCTCAAAAACATTGGTTCCCCGNCGAAAAAACCTTCGTTTCCAACCACACATAAAGGGGCTTACCGAANGCCACGTGCAANCCCGAAACAAAACGACAGGGGCCGCTTATTACACACAAGGGGTTGTCGCNTTTACCAACCTTTTACCCACGTTTCCCTGTACAAGGTTAACCGCTAAGGANCAGGGGTTCCGTTCAACATGAATAAACTTGCAATTGTAACGAGTTGTCNTCTGCTGAGTCGGTTGTTCAAGATTATGGGGACCCACAGTCTCTCCCTCAAGAGGGTTGCTTCCCGTTCGGCCAAGCTACAGATCGAAACA] consensusID : consensus_3951#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [TTATTAAAAAGGAACAACTTTTGTCATACTACAATGAAGACGCGCTCGTACGTGCTGCTAATTGCATTTCTGCTGATAGCTGTGCACGTTTCCACAGGCTTTCCCACCACCGATCATCATTCGTCATTGTGCTGCAAGCAGTGTCTCGTTTGTGAGACCACTTGCAAACTGGTCGACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCCGGATGGGTTCACCTTCAATGGGAAGGCGTGCATGCAGGACTACTCGAGCAAAATTCGTGTGCAACCCCTTTGCGAGTGTAGGAAACATTGTTAGGAATGTTCGTTTGTTTGGTGTCGTGTGTTAGTGTGTTGAAACATTCCTTTCCTGAATCATACAGTTGGCAGTGTATAAACTTGTTGCTGGAAATAAATAATCACATGACATAGTGACATACAGTGTGCATGGTTGCAAATGATCGTTGTTTTTAAAATGCTTAACTTTTACAAGCTACCTCAAACATTGTTCCGCGAAAACTGTTTCAAAAATAAGGCTACGAGCACGTGCAGCCGAACAACGACGGGCGCTATAAAAGGGTGTGCTTTCACTTACACGTTCCTGTAAGTAACGCTAGACAGGGGTCGTTCAACATGAATAACTTGCATGTAGTTTTTCTGCTGGTCGTGTTAGTTATGGGACCACAGCTCTCCTCAGG] [+] EMBL BX628999 [TTATTAAAAAGGAACAACTTTTGTCATACTACAATGAAGACGCGCTCGTACGTGCTGCTAATTGCATTTCTGCTGATAGCTGTGCACGTTTCCACAGGCTTTCCCACCACCGATCATCATTCGTCATTGTGCTGCAAGCAGTGTCTCGTTTGTGAGACCACTTGCAAACTGGTCGACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCCGGATGGGTTCACCTTCAATGGGAAGGCGTGCATGCAGGACTACTCGAGCAAAATTCGTGTGCAACCCCTTTGCGAGTGTAGGAAACATTGTTAGGAATGTTCGTTTGTTTGGTGTCGTGTGTTAGTGTGTTGAAACATTCCTTTCCTGAATCATACAGTTGGCAGTGTATAAACTTGTTGCTGGAAATAAATAATCACATGACATAGTGACATACAGTGTGCATGGTTGCAAATGATCGTTGTTTTTAAAATGCTTAACTTTTACAAGCTACCTCAAACATTGTTCCGCGAAAACTGTTTCAAAAATAAGGCTACGAGCACGTGCAGCCGAACAACGACGGGCGCTATAAAAGGGTGTGCTTTCACTTACACGTTCCTGTAAGTAACGCTAGACAGGGGTCGTTCAACATGAATAACTTGCATGTAGTTTTTCTGCTGGTCGTGTTAGTTATGGGACCACAGCTCTCCTCAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3951#1 CCNAGCAGAATTCCCGAGGTTACACTTTTGTCATACTACAATGAAGACGCGCTCGTACGT 60 consensus_3951#2 -------TTATTAAAAAGGAACAACTTTTGTCATACTACAATGAAGACGCGCTCGTACGT 53 consensus_3951#0 ------------------------------------------------------------ consensus_3951#1 GCTGCTAATTGCATTTCTGCTGATAGCTGTGCACGTTTCCACAGGCTTTCCCACCGANCG 120 consensus_3951#2 GCTGCTAATTGCATTTCTGCTGATAGCTGTGCACGTTTCCACAGGCTTTCCCACC-ACCG 112 consensus_3951#0 ------------------------------------------------------------ consensus_3951#1 ATCATCATTCGTCATTGTGCTGCAAG--CAGTGTCTCGTTTGTGAGACCACTTGCAAACT 178 consensus_3951#2 ATCATCATTCGTCATTGTGCTGCAAG--CAGTGTCTCGTTTGTGAGACCACTTGCAAACT 170 consensus_3951#0 ----------AGCAGAATCCCGCNGGTTNAATGTCTCGTTTGTGAGAC-ACTTGCAA-CT 48 ** * * ** * * ***************** ******** ** consensus_3951#1 GGTCG-ACTGTCCGGTGGAACCCGACACGGAATGCAATTGCC-GG-ATGGGTTCACCTTC 235 consensus_3951#2 GGTCG-ACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCCGG-ATGGGTTCACCTTC 228 consensus_3951#0 GGTCNTACTGTCCGGTGGAACCCGACACGGAATGCAATTGCCCGGCATGGGTTCACCTTC 108 **** ************************************ ** ************** consensus_3951#1 AATGGGAAGGCGTGCATGCAGGACTANTCGAGCAAAATTCGTGTGCAACCCCCTTTGCGA 295 consensus_3951#2 AATGGGAAGGCGTGCATGCAGGACTACTCGAGCAAAATTCGTGTGCAACCCC-TTTGCGA 287 consensus_3951#0 AATGGGAAGGCGTGCATGCAGGACTACTCGAGCAAAATTCGTGTGCAACCCC-TTTGCGA 167 ************************** ************************* ******* consensus_3951#1 GTGTAGGGAAACATTGTTAGGGAACTGTTCGTTCTGTTTGGGTGTCGTGTGTTAGGTGTG 355 consensus_3951#2 GTGTAGG-AAACATTGTTAGGAA--TGTTCGTT-TGTTTGG-TGTCGTGTGTTAG-TGTG 341 consensus_3951#0 GTGTAGG-AAACATTGTTAGGAATGTAT-CGTT-TGTTATGGTGTCGTGTGTTAG-TGTG 223 ******* ************* * * * **** **** * ************* **** consensus_3951#1 GTGAAAACCATTTCCTTTCCTGAAATCATACCAAGGTATGGGCCACAGTGGTATAAAACT 415 consensus_3951#2 TTGAAA--CATT-CCTTTCCTGAA-TCATAC--AGTTG---------GCAGTGTATAAAC 386 consensus_3951#0 TTGAAA--CATT-CCTTTCCTGAA-TCATAC---AGTATGG----CAGCTGTATAAA--C 270 ***** **** *********** ****** * * ** ** * consensus_3951#1 TGGTTGGCCTCGGGCAAAATTAACATAAATCAACATTGAACCATTAGGTGGAACATTACA 475 consensus_3951#2 TTGTTG--CTGGAAATAAATAATCACA---TGACATAGTGACATACAGTG---------- 431 consensus_3951#0 TTGTTG--CTGGAACATANCATAATCACATGCACATAGTGACATACAGTG---------- 318 * **** ** * * * **** * *** *** consensus_3951#1 AGTGGTGCATTGGGTCTTGCGACAAANTCGATCGGTTGTATCTTAAAAAATGGCCTTAAA 535 consensus_3951#2 -----TGCATGG----TTGC-----AAATGATCG-TTGTTTTT---AAAATG--CTTAAC 471 consensus_3951#0 -----TGCATGG----TTGCAAC---ATGCATCGCTTGTNNTTTCTCAACACTGCTTAAC 366 ***** * **** **** **** * ** ***** consensus_3951#1 CTTTTTATACCACAGGCTTAACCTCAAAAACATTGGTTCCCCGNCGAAAAAACCTTCGTT 595 consensus_3951#2 TTTT-------ACAAGCT--ACCTCAAA--CATTGTTCC----GCGAAAA-----CTGTT 511 consensus_3951#0 TTTN-------ACAAGCT--ANCTCAAA--CATTGTTACCCGCGCAAACA-----CTGTT 410 ** *** *** * ****** ***** * * * ** * *** consensus_3951#1 TCCAACCACACATAAAGGGGCTTACCGAANGCCACGTGCAANCCCGAAACAAAACGACAG 655 consensus_3951#2 TCAAA--------AATAAGGCT-----ACGAGCACGTGCAGCC--------GAACAACGA 550 consensus_3951#0 TCACA------AACATAAGGCT-----ACGAGCACGTGCAGCG-----AACAAACGGCAC 454 ** * * **** * ******** *** * consensus_3951#1 GGGCCGCTTATTACACACAAGGGGTTGTCGCNTTTACCAACCTTTTACCCACGTTTCCCT 715 consensus_3951#2 CGGGCGCT--------ATAAAAGGGTGT-GCTTTCACTTAC---------ACGTTCCTGT 592 consensus_3951#0 GGGGCGCT------ATACANAGGGGTGTAGCTTTCACTTAC---------ACGTTCCTGT 499 ** **** * * ** *** ** ** ** ** ***** * * consensus_3951#1 GTACAAG-GTTAACCGCTAAGGANCAGGGGTTCCGTTCAACATGAATAAACTTGCAATTG 774 consensus_3951#2 AAGTAAC-GCTAG----------ACAGGGGT--CGTTCAACATGAATAA-CTTGCA--TG 636 consensus_3951#0 AAGTAACTGCTAG----------ACAGGGGTCGTATCAACATTGCATAAACTTGCA-TNG 548 ** * ** ******* * * ** **** ****** * consensus_3951#1 TAACGAGTTGTCNTCTGCTGAGTCGGTTGTTCAAGATTATGGGGACCCACAGTCTCTCCC 834 consensus_3951#2 TAGT------TTTTCTGCTG-GTCG--TGTT---AGTTATGGGA--CCACAG-CTCTCC- 680 consensus_3951#0 TAAGA-----NATACTGCTG-GTCA--CGGTACANCNNATAGGGA-CCACAGTTCTCCTC 599 ** ****** *** * * ** ** ****** * consensus_3951#1 TCAAGAGGGTTGCTTCCCGTTC-GGCCAAGCTACAGATCGAAACA--------------- 878 consensus_3951#2 TCAGG------------------------------------------------------- 685 consensus_3951#0 AGGAGNGTATAGNNAACCGTCGAGGCCACNGCNCGTACCGTCNCAAAACCAGTTTCTACT 659 * consensus_3951#1 ------------------------------------------------------------ consensus_3951#2 ------------------------------------------------------------ consensus_3951#0 TACAGCTTANCTAACGCTGGTAATTCGCGNGGAACNCCATTGACTTTGCCAAACTAGGAC 719 consensus_3951#1 ------------------------------------------------------------ consensus_3951#2 ------------------------------------------------------------ consensus_3951#0 GCGAACTCTAAAAAACACGTAATGATTGCATNTGGTGANCANACANCGACTGTCAAGCAT 779 consensus_3951#1 ------------------------------------------------------------ consensus_3951#2 ------------------------------------------------------------ consensus_3951#0 CACTTGCTGGGATTACCGGACTACCCAGCACACGGCANGNTCAAGNCACTGTNTTAAAAA 839 consensus_3951#1 ------------------------------------------------------------ consensus_3951#2 ------------------------------------------------------------ consensus_3951#0 ATCCCCACGGNNTCAACAAGCGTTTAACAACCCNTCTACCACACATCATACCACCGGGGA 899 consensus_3951#1 ------------------------------ consensus_3951#2 ------------------------------ consensus_3951#0 GACTAACACAGCGACAAGGATTATGAACAA 929 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||