These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [CCGCCCACGCGTCCGGGAAAAGTAAAAGCTTTTAAAGAAATTCGATTCTCTTCCCATTCTGGTACATCATGCCGCAAGGAAGGCGTAAGGTAGCGTTCAGTGGAAAACAAAAAAAGCAACAGCTGCTAGCAAAAAAACAGGCGAAAAGTAGCACATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGTGACATCAGCGAGGACAGCGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGATCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACTGCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGAGCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGAGATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAAGCTGGAGAAGGATCATTACGACGACATGAAATCGCTGAGCTTCTGTGAGTTGAATTTAGAAACCTGG] [+] EMBL BM652498 [CCGCCCACGCGTCCGGGAAAAGTAAAAGCTTTTAAAGAAATTCGATTCTCTTCCCATTCTGGTACATCATGCCGCAAGGAAGGCGTAAGGTAGCGTTCAGTGGAAAACAAAAAAAGCAACAGCTGCTAGCAAAAAAACAGGCGAAAAGTAGCACATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGTGACATCAGCGAGGACAGCGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGATCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACTGCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGAGCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGAGATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAAGCTGGAGAAGGATCATTACGACGACATGAAATCGCTGAGCTTCTGTGAGTTGAATTTAGAAACCTGG] consensusID : consensus_3955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 572 fasta sequence [CCGGAAACGCCGTACAGCAAACACCGGATGCGCAAATACAAGGAAAAGTAAAAGCTATTAAAGAAATTCGATTCTCTTCCCATTCTGGTGCATCATGCCGCAAGGAAGGCGTAAGGTAGCGTTCAGTGGAAAACAGAAAAAGCAACAGCTGCTAGCGAAAAAACAGGCGAAAAGTAGCACATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGCGACATCAGCGAGGACAGCGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGATCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACTGCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGAGCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGAGATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAAACTGGAGAAGGATCATTACGACGACATGAAAT] [+] EMBL BM648439 [CCGGAAACGCCGTACAGCAAACACCGGATGCGCAAATACAAGGAAAAGTAAAAGCTATTAAAGAAATTCGATTCTCTTCCCATTCTGGTGCATCATGCCGCAAGGAAGGCGTAAGGTAGCGTTCAGTGGAAAACAGAAAAAGCAACAGCTGCTAGCGAAAAAACAGGCGAAAAGTAGCACATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGCGACATCAGCGAGGACAGCGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGATCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACTGCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGAGCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGAGATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAAACTGGAGAAGGATCATTACGACGACATGAAAT] [+] EMBL BM599437 [ GATTCTCTTCCCATTCTGGTGCATCATGCCGCAAGGAAGGCGTAAGGTATCGTTCATTGGAAAACAGAAAAAGCAACAGCTGCTACCGAAAAAACAGGCGAAAAGTACCACATCGCACAACTTAATACGAAACCTGAATGATGATGAGTCAAGCGACATCAGCGAGGACAGCGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGATCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACTGCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCATGAGATGGAGCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGAGATGTCGAAGGAGCAGCTGGATGGCAACG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3955#0 -----------------------CCGCCCACGCGT---CCGGGAAAAGTAAAAGCTTTTA 34 consensus_3955#1 CCGGAAACGCCGTACAGCAAACACCGGATGCGCAAATACAAGGAAAAGTAAAAGCTATTA 60 *** *** * *************** *** consensus_3955#0 AAGAAATTCGATTCTCTTCCCATTCTGGTACATCATGCCGCAAGGAAGGCGTAAGGTAGC 94 consensus_3955#1 AAGAAATTCGATTCTCTTCCCATTCTGGTGCATCATGCCGCAAGGAAGGCGTAAGGTAGC 120 ***************************** ****************************** consensus_3955#0 GTTCAGTGGAAAACAAAAAAAGCAACAGCTGCTAGCAAAAAAACAGGCGAAAAGTAGCAC 154 consensus_3955#1 GTTCAGTGGAAAACAGAAAAAGCAACAGCTGCTAGCGAAAAAACAGGCGAAAAGTAGCAC 180 *************** ******************** *********************** consensus_3955#0 ATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGTGACATCAGCGAGGACAG 214 consensus_3955#1 ATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGCGACATCAGCGAGGACAG 240 ****************************************** ***************** consensus_3955#0 CGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGA 274 consensus_3955#1 CGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGA 300 ************************************************************ consensus_3955#0 TCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACT 334 consensus_3955#1 TCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACT 360 ************************************************************ consensus_3955#0 GCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGA 394 consensus_3955#1 GCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGA 420 ************************************************************ consensus_3955#0 GCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGA 454 consensus_3955#1 GCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGA 480 ************************************************************ consensus_3955#0 GATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAA 514 consensus_3955#1 GATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAA 540 ************************************************************ consensus_3955#0 GCTGGAGAAGGATCATTACGACGACATGAAATCGCTGAGCTTCTGTGAGTTGAATTTAGA 574 consensus_3955#1 ACTGGAGAAGGATCATTACGACGACATGAAAT---------------------------- 572 ******************************* consensus_3955#0 AACCTGG 581 consensus_3955#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||