cluster # 3955

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Anopheles gambiae
cluster # 3955 cluster # 3955 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3955#0 length = 581 sequences # 1

consensus_3955#1 length = 572 sequences # 2

consensusID : consensus_3955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [CCGCCCACGCGTCCGGGAAAAGTAAAAGCTTTTAAAGAAATTCGATTCTCTTCCCATTCTGGTACATCATGCCGCAAGGAAGGCGTAAGGTAGCGTTCAGTGGAAAACAAAAAAAGCAACAGCTGCTAGCAAAAAAACAGGCGAAAAGTAGCACATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGTGACATCAGCGAGGACAGCGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGATCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACTGCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGAGCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGAGATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAAGCTGGAGAAGGATCATTACGACGACATGAAATCGCTGAGCTTCTGTGAGTTGAATTTAGAAACCTGG]

[+] EMBL BM652498             [CCGCCCACGCGTCCGGGAAAAGTAAAAGCTTTTAAAGAAATTCGATTCTCTTCCCATTCTGGTACATCATGCCGCAAGGAAGGCGTAAGGTAGCGTTCAGTGGAAAACAAAAAAAGCAACAGCTGCTAGCAAAAAAACAGGCGAAAAGTAGCACATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGTGACATCAGCGAGGACAGCGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGATCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACTGCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGAGCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGAGATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAAGCTGGAGAAGGATCATTACGACGACATGAAATCGCTGAGCTTCTGTGAGTTGAATTTAGAAACCTGG]




>consensus_3955#0
CCGCCCACGCGTCCGGGAAAAGTAAAAGCTTTTAAAGAAATTCGATTCTCTTCCCATTCT
GGTACATCATGCCGCAAGGAAGGCGTAAGGTAGCGTTCAGTGGAAAACAAAAAAAGCAAC
AGCTGCTAGCAAAAAAACAGGCGAAAAGTAGCACATCGCACAACTTAATACGAAACCTGA
AGGATGAGGAGTCGAGTGACATCAGCGAGGACAGCGATATGCCGAGAACGTTCGGGCAGA
ACATTGAAAAGATCAACCTGCAACCGTTGAAGGATCCGCGCAGCAAAACGAACCGATACG
TGCTGCAGTTCCACCGGGAAACGGCGAAGGAACTGCGGGAGATGAAGGAGGAAGCCCGGA
AGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGAGCTGGGGGACAACTACTTCCAGCAGT
ACGATTTCCCCACGCGGCCCAAGTGGACGTACGAGATGTCGAAGGAGCAGCTGGATGGCA
ACGAGAATCGGTACTTCTTTAAGTACGTTACAAAGCTGGAGAAGGATCATTACGACGACA
TGAAATCGCTGAGCTTCTGTGAGTTGAATTTAGAAACCTGG

consensusID : consensus_3955#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 572
fasta sequence

                              [CCGGAAACGCCGTACAGCAAACACCGGATGCGCAAATACAAGGAAAAGTAAAAGCTATTAAAGAAATTCGATTCTCTTCCCATTCTGGTGCATCATGCCGCAAGGAAGGCGTAAGGTAGCGTTCAGTGGAAAACAGAAAAAGCAACAGCTGCTAGCGAAAAAACAGGCGAAAAGTAGCACATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGCGACATCAGCGAGGACAGCGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGATCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACTGCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGAGCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGAGATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAAACTGGAGAAGGATCATTACGACGACATGAAAT]

[+] EMBL BM648439             [CCGGAAACGCCGTACAGCAAACACCGGATGCGCAAATACAAGGAAAAGTAAAAGCTATTAAAGAAATTCGATTCTCTTCCCATTCTGGTGCATCATGCCGCAAGGAAGGCGTAAGGTAGCGTTCAGTGGAAAACAGAAAAAGCAACAGCTGCTAGCGAAAAAACAGGCGAAAAGTAGCACATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGCGACATCAGCGAGGACAGCGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGATCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACTGCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGAGCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGAGATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAAACTGGAGAAGGATCATTACGACGACATGAAAT]
[+] EMBL BM599437             [                                                                     GATTCTCTTCCCATTCTGGTGCATCATGCCGCAAGGAAGGCGTAAGGTATCGTTCATTGGAAAACAGAAAAAGCAACAGCTGCTACCGAAAAAACAGGCGAAAAGTACCACATCGCACAACTTAATACGAAACCTGAATGATGATGAGTCAAGCGACATCAGCGAGGACAGCGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGATCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACTGCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCATGAGATGGAGCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGAGATGTCGAAGGAGCAGCTGGATGGCAACG                                                               ]




>consensus_3955#1
CCGGAAACGCCGTACAGCAAACACCGGATGCGCAAATACAAGGAAAAGTAAAAGCTATTA
AAGAAATTCGATTCTCTTCCCATTCTGGTGCATCATGCCGCAAGGAAGGCGTAAGGTAGC
GTTCAGTGGAAAACAGAAAAAGCAACAGCTGCTAGCGAAAAAACAGGCGAAAAGTAGCAC
ATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGCGACATCAGCGAGGACAG
CGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGA
TCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACT
GCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGA
GCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGA
GATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAA
ACTGGAGAAGGATCATTACGACGACATGAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3955#0      -----------------------CCGCCCACGCGT---CCGGGAAAAGTAAAAGCTTTTA 34
consensus_3955#1      CCGGAAACGCCGTACAGCAAACACCGGATGCGCAAATACAAGGAAAAGTAAAAGCTATTA 60
                                             ***    ***     *  *************** ***

consensus_3955#0      AAGAAATTCGATTCTCTTCCCATTCTGGTACATCATGCCGCAAGGAAGGCGTAAGGTAGC 94
consensus_3955#1      AAGAAATTCGATTCTCTTCCCATTCTGGTGCATCATGCCGCAAGGAAGGCGTAAGGTAGC 120
                      ***************************** ******************************

consensus_3955#0      GTTCAGTGGAAAACAAAAAAAGCAACAGCTGCTAGCAAAAAAACAGGCGAAAAGTAGCAC 154
consensus_3955#1      GTTCAGTGGAAAACAGAAAAAGCAACAGCTGCTAGCGAAAAAACAGGCGAAAAGTAGCAC 180
                      *************** ******************** ***********************

consensus_3955#0      ATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGTGACATCAGCGAGGACAG 214
consensus_3955#1      ATCGCACAACTTAATACGAAACCTGAAGGATGAGGAGTCGAGCGACATCAGCGAGGACAG 240
                      ****************************************** *****************

consensus_3955#0      CGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGA 274
consensus_3955#1      CGATATGCCGAGAACGTTCGGGCAGAACATTGAAAAGATCAACCTGCAACCGTTGAAGGA 300
                      ************************************************************

consensus_3955#0      TCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACT 334
consensus_3955#1      TCCGCGCAGCAAAACGAACCGATACGTGCTGCAGTTCCACCGGGAAACGGCGAAGGAACT 360
                      ************************************************************

consensus_3955#0      GCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGA 394
consensus_3955#1      GCGGGAGATGAAGGAGGAAGCCCGGAAGGGGCTGGTGTATCGCAGCGAGCAGGAGATGGA 420
                      ************************************************************

consensus_3955#0      GCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGA 454
consensus_3955#1      GCTGGGGGACAACTACTTCCAGCAGTACGATTTCCCCACGCGGCCCAAGTGGACGTACGA 480
                      ************************************************************

consensus_3955#0      GATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAA 514
consensus_3955#1      GATGTCGAAGGAGCAGCTGGATGGCAACGAGAATCGGTACTTCTTTAAGTACGTTACAAA 540
                      ************************************************************

consensus_3955#0      GCTGGAGAAGGATCATTACGACGACATGAAATCGCTGAGCTTCTGTGAGTTGAATTTAGA 574
consensus_3955#1      ACTGGAGAAGGATCATTACGACGACATGAAAT---------------------------- 572
                       *******************************                            

consensus_3955#0      AACCTGG 581
consensus_3955#1      -------