These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3961#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 737 fasta sequence [CAGAATCGCACGAGGTGNNAGCTGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCCGAATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATCAAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCGGCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGAAGGTACCAACAGGGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACGTTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCAGTGAGGATCACTCCGATTGCGATTGTTCTATTAGTTACTAGTTAAGGCCCGGTAAAATCTACCGGATGTCCTCAAATTTAGAATTATTTTCAAACTCTACACGTTCAGTGGCAACAACCATAACTCAAACACCTATTTGTTCTTATTTGTTCTTACAACTGTGTTAACCTTGTAACTTCCTGGTTTTTACAGTTCTTACTGTACATTGCAGAACCGTTAAATATCGATGAGGCTACTTTTGAGCCATACTGATGTAAATCTTAAATTTTAAATAACCATAAAAAACCAAGTCACGCAATTTTGTAATTTTTTTAACTGGTGTTCAAAAAATAANGGTTATTTGTTACGCACGTAAAGTACCAATGAATCTTATTTAC] [+] EMBL AL696681 [CAGAATCGCACGAGGTGNNAGCTGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCCGAATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATCAAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCGGCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGAAGGTACCAACAGGGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACGTTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCAGTGAGGATCACTCCGATTGCGATTGTTCTATTAGTTACTAGTTAAGGCCCGGTAAAATCTACCGGATGTCCTCAAATTTAGAATTATTTTCAAACTCTACACGTTCAGTGGCAACAACCATAACTCAAACACCTATTTGTTCTTATTTGTTCTTACAACTGTGTTAACCTTGTAACTTCCTGGTTTTTACAGTTCTTACTGTACATTGCAG ] [+] EMBL BX620854 [ ACCGCCTGAGCCCACTCCGAATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATCAAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCGGCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGAAGGTACCAACA GGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACGTTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCAGTGAGGATCACTCCGATTGCGATTGTT TATTAGTTACTAGTTAAGGCCCGGTAAAATCTACCGGATGTCCTCAAATTTAGAATTATTTTCAAACTCTACACGTCCAGTGGCAACAACCATAACTCAAACACCTATTTGTTCTTATTTGTTCTTACAACTGTGTTAACCTTGTAACTTCCTGGTTTTTACAGTTCTTACTGTACATTGCAGAACCGTTAAATATCGATGAGGCTACTTTTGAGCCATACTGATGTAAATCTTAAATTTTAAATAACCATAAAAAACCAAGTCACGCAATTTTGTAATTTTTTTAACTGGTGTTCAAAAAATAANGGTTATTTGTTACGCACGTAAAGTACCAATGAATCTTATTTAC] consensusID : consensus_3961#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CCGCCCACGCGTCCGGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCCGGATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATCAAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCGGCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGAAGGTACCAACAGGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACGTTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCAGTGAGGATCACTCCGATTGCGATTGTTTATTAGTTATGCTAATGACCCATGGAGACGATGACGTTTTGTATGCGTACGATGGACCTTACAGTGTAGACAAATTATGGGAGAGTTTTATGGGCAACGCATGCACTACGCTACTTGGCAAGCCGAAGCTGTTTTTCGTCCAAGCCTGCCGTGGAAGCACATTCGATAAAGGGGTGAAGTTGGGCTGTCGCGATTTGGACAGTGACCATTTCTCATCGCACAAGTATGTGATTCCGACTACGGCCGATTTGTTGGTGATGTACTCTTCATATAAGGGCCATGTGTCATGGAGAA] [+] EMBL BM599894 [CCGCCCACGCGTCCGGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCCGGATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATCAAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCGGCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGAAGGTACCAACAGGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACGTTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCAGTGAGGATCACTCCGATTGCGATTGTTTATTAGTTATGCTAATGACCCATGGAGACGATGACGTTTTGTATGCGTACGATGGACCTTACAGTGTAGACAAATTATGGGAGAGTTTTATGGGCAACGCATGCACTACGCTACTTGGCAAGCCGAAGCTGTTTTTCGTCCAAGCCTGCCGTGGAAGCACATTCGATAAAGGGGTGAAGTTGGGCTGTCGCGATTTGGACAGTGACCATTTCTCATCGCACAAGTATGTGATTCCGACTACGGCCGATTTGTTGGTGATGTACTCTTCATATAAGGGCCATGTGTCATGGAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3961#0 CAGAATCGCACGAGGTGNNAGCTGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCC 60 consensus_3961#1 -----CCGCCC---ACGCGTCCGGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCC 52 *** * * * ************************************* consensus_3961#0 GAATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATC 120 consensus_3961#1 GGATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATC 112 * ********************************************************** consensus_3961#0 AAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCG 180 consensus_3961#1 AAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCG 172 ************************************************************ consensus_3961#0 GCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGA 240 consensus_3961#1 GCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGA 232 ************************************************************ consensus_3961#0 AGGTACCAACAGGGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACG 300 consensus_3961#1 AGGTACCAACAGGG-ATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACG 291 ************** ********************************************* consensus_3961#0 TTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCA 360 consensus_3961#1 TTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCA 351 ************************************************************ consensus_3961#0 GTGAGGATCACTCCGATTGCGATTGTTCTATTAGTTACTAGTTAAGGCCCGGTAAAATCT 420 consensus_3961#1 GTGAGGATCACTCCGATTGCGATTGTT-TATTAGTTAT--GCTAATGACCCATGGAGACG 408 *************************** ********* * *** * ** * * * consensus_3961#0 ACCGGATGTCCT-CAAATTTAGAATTATTTTCAAACTCTACACGTTCAGTGGCAACAACC 479 consensus_3961#1 AT--GACGTTTTGTATGCGTACGATGGACCTTACAGTGTAGACAAATTATGGGAG-AGTT 465 * ** ** * * ** ** * * * * ** ** *** * * consensus_3961#0 ATAACTCAAACACCTATTTGTTCTTATTTGTTCTTACAACTGTGTTAACCTTGTAACTTC 539 consensus_3961#1 TTATGGGCAACGCATGCACTACGCTACTTG-------------GCAAGCC--GAAGCTGT 510 ** *** * * ** *** * * ** * * ** consensus_3961#0 CTGGTTTTTACAGTTCTTACTGTACATTGCAGAACCGTTAAATATCGATGAGGCTACTTT 599 consensus_3961#1 TT--TTCGTCCAAG-CCTGCCGTGGAA-GCACATTCGATAAAGG--GGTGAAGTTGGGCT 564 * ** * ** * * * ** * *** * ** **** * *** * * * consensus_3961#0 TGAGCCATACTGAT-GTAAATCTTAAATTTTAAATAACCATAAAAAACCAAGTCACGCAA 658 consensus_3961#1 GTCGCGATTTGGACAGTGACCATTTCTCATCGCACAAGTATGTGATTCCGACTACGGCCG 624 ** ** ** ** * ** * * ** ** * ** * * ** consensus_3961#0 TTTTGTAATTTTTTTAACTGGTGTTCAAAAAATAANGGTTATTTGTTACGCACGTAAAGT 718 consensus_3961#1 ATTTGTTGGTGAT-------GTACTCTTCATATAAGGGCCATGTGTCATGGAGAA----- 672 ***** * * ** ** * **** ** ** *** * * * consensus_3961#0 ACCAATGAATCTTATTTAC 737 consensus_3961#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||