cluster # 3964

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Anopheles gambiae
cluster # 3964 cluster # 3964 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3964#0 length = 705 sequences # 1

consensus_3964#1 length = 675 sequences # 2

consensusID : consensus_3964#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [CAGAATCCGCGCACGAGGTGTTTGTTGCGCGCCGATTGGAAAGCAGCTTGTTTACAAAAGATTTAGCAAACCCGAAATAAAGTGCTTCGCCGTGTTCTCAAGGGCCAAATGCATGGACGCGCGTACCCGAATGTATCGCGTCCTTCCACAATCGATTGTACAGAACTGAACTGTAGCTCGTGCGAAGCGTTGTTGTGTAAAGCGAACGGGGCCGGGAGGAGCGAATCGGGACCGNCGGAATGGTGTGGGTGGCAAAGGCGGAAAACACAACAGTCGTTGCCGTGTCCACTATGGAGCCGAAACCGGGTGGAAACCATTTGCTAACAAGGTGGCCGTTGCCGAGGGTGGGGCTTTTGGGCGCGCCCANTTTTTAAACCCGGGGGCCAATTGGGCGGCCCAAGGTTGGGCGGAAAAGCCNAAATTTGGCCGGGGGGCCGTGTGGCCAAGGCCAAAAACCGGGGGGCCGGTTCCGGGGCCAAAATGGGCGGTGGTTTGGGCGCCAAAACAAGGCTTTTAGGGGCCAATTCATCCTGGGCGTAGGGGAGTTGACCGGCCGAGCCAGCCAAGAATGGGCAGCCGGTGGCCAAGCCACCTTGGNGTGGGTTGCCAACGGGCAGGCTTGGGGAAAATTCCAAAAAAGGTTGGTTGCANTTAAACCACCGGGGAAGGCCCGGGGGGGGAAAGCGGCTTAAAGAGGTTTGGGGG]

[+] EMBL AL696864             [CAGAATCCGCGCACGAGGTGTTTGTTGCGCGCCGATTGGAAAGCAGCTTGTTTACAAAAGATTTAGCAAACCCGAAATAAAGTGCTTCGCCGTGTTCTCAAGGGCCAAATGCATGGACGCGCGTACCCGAATGTATCGCGTCCTTCCACAATCGATTGTACAGAACTGAACTGTAGCTCGTGCGAAGCGTTGTTGTGTAAAGCGAACGGGGCCGGGAGGAGCGAATCGGGACCGNCGGAATGGTGTGGGTGGCAAAGGCGGAAAACACAACAGTCGTTGCCGTGTCCACTATGGAGCCGAAACCGGGTGGAAACCATTTGCTAACAAGGTGGCCGTTGCCGAGGGTGGGGCTTTTGGGCGCGCCCANTTTTTAAACCCGGGGGCCAATTGGGCGGCCCAAGGTTGGGCGGAAAAGCCNAAATTTGGCCGGGGGGCCGTGTGGCCAAGGCCAAAAACCGGGGGGCCGGTTCCGGGGCCAAAATGGGCGGTGGTTTGGGCGCCAAAACAAGGCTTTTAGGGGCCAATTCATCCTGGGCGTAGGGGAGTTGACCGGCCGAGCCAGCCAAGAATGGGCAGCCGGTGGCCAAGCCACCTTGGNGTGGGTTGCCAACGGGCAGGCTTGGGGAAAATTCCAAAAAAGGTTGGTTGCANTTAAACCACCGGGGAAGGCCCGGGGGGGGAAAGCGGCTTAAAGAGGTTTGGGGG]




>consensus_3964#0
CAGAATCCGCGCACGAGGTGTTTGTTGCGCGCCGATTGGAAAGCAGCTTGTTTACAAAAG
ATTTAGCAAACCCGAAATAAAGTGCTTCGCCGTGTTCTCAAGGGCCAAATGCATGGACGC
GCGTACCCGAATGTATCGCGTCCTTCCACAATCGATTGTACAGAACTGAACTGTAGCTCG
TGCGAAGCGTTGTTGTGTAAAGCGAACGGGGCCGGGAGGAGCGAATCGGGACCGNCGGAA
TGGTGTGGGTGGCAAAGGCGGAAAACACAACAGTCGTTGCCGTGTCCACTATGGAGCCGA
AACCGGGTGGAAACCATTTGCTAACAAGGTGGCCGTTGCCGAGGGTGGGGCTTTTGGGCG
CGCCCANTTTTTAAACCCGGGGGCCAATTGGGCGGCCCAAGGTTGGGCGGAAAAGCCNAA
ATTTGGCCGGGGGGCCGTGTGGCCAAGGCCAAAAACCGGGGGGCCGGTTCCGGGGCCAAA
ATGGGCGGTGGTTTGGGCGCCAAAACAAGGCTTTTAGGGGCCAATTCATCCTGGGCGTAG
GGGAGTTGACCGGCCGAGCCAGCCAAGAATGGGCAGCCGGTGGCCAAGCCACCTTGGNGT
GGGTTGCCAACGGGCAGGCTTGGGGAAAATTCCAAAAAAGGTTGGTTGCANTTAAACCAC
CGGGGAAGGCCCGGGGGGGGAAAGCGGCTTAAAGAGGTTTGGGGG

consensusID : consensus_3964#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 675
fasta sequence

                              [CCGGTTTTGCTGCGCGCCCGATTGGAAAGCAGCTTGTTTACAAAAGGTTTAGCAAACCCGAAATAAAGTGCTTCGCCGTGTTATCAGGGGCCAATGCATGGACGCGCGTACTCGAATGTATCGCGTCCTTCCTCAATCGATTGTACAGAACTGAACTATAGCTCGTGCGAAGCGTTGTTGTGTAAGCAAACGGGCGGGAGGAGCAAATCGGGACCGCGAATGGTGTGGTGGCCAAGGCGAAACACACAGTCGTGCGTGTCACTATGAGCGAACGGTGGAACATTGCTAACAGTGCGTTGCGAGGTGGCTTGGGCATTAACGGCATGGGCAGTGGAAGCAATGCGGGCGGCAGCAACGGCGTCGGCAATGGTGTTGGCAACAGCTTAGGGCATCATCCTGGCGTGGGAGTGACGGCGGCAGCAGATGGCGGCGGTGGCAGCATTGGTGGTGCAGGAGCTGGAATCAAAGTGGGCATACACGGTGCGGGAGGTAGCGGCACCATCACCACCTCCACTACCACCACGTTCAGTGCGGCAAACGGAGAGTCGGGAATACTGCGCCGTACCGGGGCATTATCACCACCACGGCGGCACACCGGACAACTTTGACGATCTGCTAGTGTTCGGGTACTCGTGCAAAGTCTTCCGCGACGACGAGCGAGCACGCTTCATCGAT]

[+] EMBL BM582141             [CCGGTTTTGCTGCGCGCCCGATTGGAAAGCAGCTTGTTTACAAAAGGTTTAGCAAACCCGAAATAAAGTGCTTCGCCGTGTTATCAGGGGCCAATGCATGGACGCGCGTACTCGAATGTATCGCGTCCTTCCTCAATCGATTGTACAGAACTGAACTATAGCTCGTGCGAAGCGTTGTTGTGTAAGCAAACGGGCGGGAGGAGCAAATCGGGACCGCGAATGGTGTGGTGGCCAAGGCGAAACACACAGTCGTGCGTGTCACTATGAGCGAACGGTGGAACATTGCTAACAGTGCGTTGCGAGGTGGCTTGGGCATTAACGGCATGGGCAGTGGAAGCAATGCGGGCGGCAGCAACGGCGTCGGCAATGGTGTTGGCAACAGCTTAGGGCATCATCCTGGCGTGGGAGTGACGGCGGCAGCAGATGGCGGCGGTGGCAGCATTGGTGGTGCAGGAGCTGGAATCAAAGTGGGCATACACGGTGCGGGAGGTAGCGGCACCATCACCACCTCCACTACCACCACGTTCAGTGCGGCAAACGGAGAGTCGGGAATACTGCGCCGTACCGGGGCATTATCACCACCACGGCGGCACACCGGACAACTTTGACGATC                                                              ]
[+] EMBL BM650553             [                   ccgTGGAAAGCAGCTTGTTTACAAAAGGTTTAGCAAACCCGAAATAAAGTGCTTCGCCGTGTTATCAGGGGCCAATGCATGGACGCGCGTACTCGAATGTATCGCGTCCTTCCTCAATCGATTGTACAGAACTGAACTATAGCTCGTGCGAAGCGTTGTTGTGTAAGCAAACGGGCGGGAGGAGCAAATCGGGACCGCGAATGGTGTGGTGGCCAAGGCGAAACACACAGTCGTGCGTGTCACTATGAGCGAACGGTGGAACATTGCTAACAGTGCGTTGCGAGGTGGCTTGGGCATTAACGGCATGGGCAGTGGAAGCAATGCGGGCGGCAGCAACGGCGTCGGCAATGGTGTTGGCAACAGCTTAGGGCATCATCCTGGCGTGGGAGTGACGGCGGCAGCAGATGGCGGCGGTGGCAGCATTGGTGGTGCAGGAGCTGGAATCAAAGTGGGCATACACGGTGCGGGAGGTAGCGGCACCATCACCACCTCCACTACCACCACGTTCAGTGCGGCAAACGGAGAGTCGGGAATACTGCGCCGTACC GGGCATTATCACCACCACGGCGGCACACCGGACAACTTTGACGATCTGCTAGTGTTCGGGTACTCGTGCAAAGTCTTCCGCGACGACGAGCGAGCACGCTTCATCGAT]




>consensus_3964#1
CCGGTTTTGCTGCGCGCCCGATTGGAAAGCAGCTTGTTTACAAAAGGTTTAGCAAACCCG
AAATAAAGTGCTTCGCCGTGTTATCAGGGGCCAATGCATGGACGCGCGTACTCGAATGTA
TCGCGTCCTTCCTCAATCGATTGTACAGAACTGAACTATAGCTCGTGCGAAGCGTTGTTG
TGTAAGCAAACGGGCGGGAGGAGCAAATCGGGACCGCGAATGGTGTGGTGGCCAAGGCGA
AACACACAGTCGTGCGTGTCACTATGAGCGAACGGTGGAACATTGCTAACAGTGCGTTGC
GAGGTGGCTTGGGCATTAACGGCATGGGCAGTGGAAGCAATGCGGGCGGCAGCAACGGCG
TCGGCAATGGTGTTGGCAACAGCTTAGGGCATCATCCTGGCGTGGGAGTGACGGCGGCAG
CAGATGGCGGCGGTGGCAGCATTGGTGGTGCAGGAGCTGGAATCAAAGTGGGCATACACG
GTGCGGGAGGTAGCGGCACCATCACCACCTCCACTACCACCACGTTCAGTGCGGCAAACG
GAGAGTCGGGAATACTGCGCCGTACCGGGGCATTATCACCACCACGGCGGCACACCGGAC
AACTTTGACGATCTGCTAGTGTTCGGGTACTCGTGCAAAGTCTTCCGCGACGACGAGCGA
GCACGCTTCATCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3964#0      CAGAATCCGCGCACGAGGTGTTTGTTGCGCGCC-GATTGGAAAGCAGCTTGTTTACAAAA 59
consensus_3964#1      --------------CCGGT-TTTGCTGCGCGCCCGATTGGAAAGCAGCTTGTTTACAAAA 45
                                      *** **** ******** **************************

consensus_3964#0      GATTTAGCAAACCCGAAATAAAGTGCTTCGCCGTGTTCTCAAGGGCCAAATGCATGGACG 119
consensus_3964#1      GGTTTAGCAAACCCGAAATAAAGTGCTTCGCCGTGTTATCAGGGGCCAA-TGCATGGACG 104
                      * *********************************** *** ******* **********

consensus_3964#0      CGCGTACCCGAATGTATCGCGTCCTTCCACAATCGATTGTACAGAACTGAACTGTAGCTC 179
consensus_3964#1      CGCGTACTCGAATGTATCGCGTCCTTCCTCAATCGATTGTACAGAACTGAACTATAGCTC 164
                      ******* ******************** ************************ ******

consensus_3964#0      GTGCGAAGCGTTGTTGTGTAAAGCGAACGGGGCCGGGAGGAGCGAATCGGGACCGNCGGA 239
consensus_3964#1      GTGCGAAGCGTTGTTGTGTAA-GCAAACGGG--CGGGAGGAGCAAATCGGGACCGC--GA 219
                      ********************* ** ******  ********** ***********   **

consensus_3964#0      ATGGTGTGGGTGGCAAAGGCGGAAAACACAACAGTCGTTGCCGTGTCCACTATGGAGCCG 299
consensus_3964#1      ATGGTGTGG-TGGCCAAGGCGAAACACACA---GTCGTGCGTGTCACTATGAGCGAACGG 275
                      ********* **** ****** ** *****   *****    **  * *  *  ** * *

consensus_3964#0      AAACCGGGTGGAAACCATTTGCTAACAAGGTGGCC--GTTGCCGAGGGTGGGGCTTTTGG 357
consensus_3964#1      TGGAACATTGCTAACAGTGCGTTG-CGAGGTGGCTTGGGCATTAACGGCATGGGCAGTGG 334
                              **  ***  *  * *  * *******   *      * **   **    ***

consensus_3964#0      GCGCGCC-CANTTTTTAAACCCGGGGGC--CAATTGGGCGGCCCAAGGTTGGGCGGAAAA 414
consensus_3964#1      AAGCAATGCGGGCGGCAGCAACGGCGTCGGCAATGGTGTTGGCAACAGCTTAGGGCATCA 394
                        **    *       *    *** * *  **** * *  * * *  * *  * * *  *

consensus_3964#0      GCCNAAATTTGGCCGGGGGGCCGT-GTGGCCAAGGCCAAAAACCGGGGGGCCGGTTCCGG 473
consensus_3964#1      TCCTGGCGTGGGAGTGACGGCGGCAGCAGATGGCGGCGGTGGCAGCATTGGTGGTGCAGG 454
                       **     * **   *  *** *  *  *     * *     * *    *  *** * **

consensus_3964#0      GGCCAAAATGGGCGGTGGTTTGGGCGCCAAAACAAGGCTTTTAGGGGCCAATTCATCCTG 533
consensus_3964#1      AGCTGGAATCAAAGTGGGCATACACGGTGCGGGAGG-----TAGCGGCACCATCACCACC 509
                       **   ***    *  **  *   **       * *     *** ***    *** *   

consensus_3964#0      GGCGTAGGGGAGTTGACCGGCCGAGCCAGCCAAGAATGGGCAGCCGGTGGCCAAGCCACC 593
consensus_3964#1      TCCACTACCACCACGTTCAGTGCGGCAAACGGAGAGTCGGGAAT-----ACTGCGCCGTA 564
                        *           *  * *    ** * *  *** * ** *        *   ***   

consensus_3964#0      TTGGNGTGG-GTTGCCAACGGGCAGGCTTGG-GGAAAATTCCAAAAAAGGTTGGTTGCAN 651
consensus_3964#1      CCGGGGCATTATCACCACCACGGCGGCACACCGGACAACTTTGACGA--TCTGCTAGTGT 622
                        ** *     *  *** *  *  ***     *** ** *   *  *    ** * *   

consensus_3964#0      TTAAACCACCGGGGAAGGCCCGGGGGGGGAAAGCGGCTTAAAGAGGTTTGGGGG- 705
consensus_3964#1      TCGGGTACTCGTGCAAAGTCTTCCGCGACGA--CGAGCGAGCACGCTTCATCGAT 675
                      *        ** * ** * *    * *   *  **    *    * **    *