These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 711 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGCGTGTCGAGCATCTCGCTGCAGTAGCGCTCCGGTAGGACACGGACATCCCTGCGTATATGTGTGTAGTTGTCTCTGTGTGTGCGTTTGTGTGGTTGCAAAATTGAGAAGAAGCAGCAGCCTCAGCCTCAATGCAGCGCGTGTGCAGCACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCAGCCGTGTGAGGAGTCTGCGTGAAAGAAGATTGATTCCGTCAGTGCGTGAAGGATAGCACCGCACCCCACGACGGTGGGTGGCCGGTAGTGGTGGAGGAGGAAACAAGGGGTTTGTCAAACCCCGCCTCCCCTCTCTTCCCTCCCCCCCCCGCCCCTCGTTGTCTCGTTTGTTTGCTACAACCGCAAAAGGGGGACAGCCGGCGGTAGCAAAACAACAACAACAACAACAACAACAACCCAGAAAGAAAGAAAAACGCAAAGTGAAGCACGAACGCCGCTCGCGCACGCTGCAAGGGAGGAGGAGGGCCAACCCCGAAAGGACCGAGCACCGGAGCCCCCGAAACAAGATGAAAATACAGCACCAGCGGGTACGGTTTACGAGCAGCGTATTGTACGATCACAACTTTCACGACATTCAACACCAGCAGCAGCAGACGCGCAAGCAGACGGACGCGAGCAGCCACGACGGAG] [+] EMBL BM630994 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGCGTGTCGAGCATCTCGCTGCAGTAGCGCTCCGGTAGGACACGGACATCCCTGCGTATATGTGTGTAGTTGTCTCTGTGTGTGCGTTTGTGTGGTTGCAAAATTGAGAAGAAGCAGCAGCCTCAGCCTCAATGCAGCGCGTGTGCAGCACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCAGCCGTGTGAGGAGTCTGCGTGAAAGAAGATTGATTCCGTCAGTGCGTGAAGGATAGCACCGCACCCCACGACGGTGGGTGGCCGGTAGTGGTGGAGGAGGAAACAAGGGGTTTGTCAAACCCCGCCTCCCCTCTCTTCCCTCCCCCCCCCGCCCCTCGTTGTCTCGTTTGTTTGCTACAACCGCAAAAGGGGGACAGCCGGCGGTAGCAAAACAACAACAACAACAACAACAACAACCCAGAAAGAAAGAAAAACGCAAAGTGAAGCA ] [+] EMBL BM598882 [ CCGGAAAAGCGTGTCGAGCATCTCGCTGCAGTAGCGCTCCGGTAGGACACGGACATCCCTGCGTATATGTGTGTAGTTGTCTCTGTGTGTGCGTTTGTGTGGTTGCAAAATTGAGAAGAAGCAGCAGCCTCAGCCTCAATGCAGCGCGTGTGCAGCACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCAGCCGTGTGAGGAGTCTGCGTGAAAGAAGATTGATTCCGTCAGTGCGTGAAGGATAGCACCGCACCCCACGACGGTGGGTGGCCGGTAGTGGTGGAGGAGGAAACAAGGGGTTTGTCAAACCCCGCCTCCCCTCTCTTCCCTCCCCCCCCCGCCCCTCGTTGTCTCGTTTGTTTGCTACAACCGCAAAAGGGGGACAGCCGGCGGTAGCAAAACAACAACAACAACAACAACAACAACCCAGAAAGAAAGAAAAACGCAAAGTGAAGCACGAACGCCGCTCGCGCACGCTGCAAGGGAGGAGGAGGGCCAACCCCGAAAGGACCGAGCACCGGAGCCCCCGAAACAAGATGAAAATACAGCACCAGCGGGTACGGTTTACGAGCAGCGTATTGTACGATCACAACTTTCACGACATTCAACACCAGCAGCAGCAGACGCGCAAGCAGACGGACGCGAGCAGCCACGACGGAG] consensusID : consensus_3965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [GTGCAGCACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCAGCCGTGTGAGGAGTCTGCGTGAAAGAAGATATACGTTCCAGCCGCGTTGGCGGCAGCGTGTGCAGCGACACTACTCTCCTCGTCGTCGTGCCGCGACCGCGAAGGGCGGCCACATTCGTTAAGAATCTTCTAAACCTCTACAGTACGCAAAGCAAAGGTGTACAAAAAAAAAAAACAACAACGAAGAAGCACCAACCAGCAGAACGCGACAGTGAAG] [+] EMBL BX606539 [GTGCAGCACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCAGCCGTGTGAGGAGTCTGCGTGAAAGAAGATATACGTTCCAGCCGCGTTGGCGGCAGCGTGTGCAGCGACACTACTCTCCTCGTCGTCGTGCCGCGACCGCGAAGGGCGGCCACATTCGTTAAGAATCTTCTAAACCTCTACAGTACGCAAAGCAAAGGTGTACAAAAAAAAAAAACAACAACGAAGAAGCACCAACCAGCAGAACGCGACAGTGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3965#0 CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAGCGTGTCGAGCATCTCGCTGCAGTAGCG 60 consensus_3965#1 ------------------------------------------------------------ consensus_3965#0 CTCCGGTAGGACACGGACATCCCTGCGTATATGTGTGTAGTTGTCTCTGTGTGTGCGTTT 120 consensus_3965#1 ------------------------------------------------------------ consensus_3965#0 GTGTGGTTGCAAAATTGAGAAGAAGCAGCAGCCTCAGCCTCAATGCAGCGCGTGTGCAGC 180 consensus_3965#1 -----------------------------------------------------GTGCAGC 7 ******* consensus_3965#0 ACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCA 240 consensus_3965#1 ACCTCTCTGTTCCGCCCATAGTGCGGCCGTGAATTCACTACGTTGCAGAAGCATGAAGCA 67 ************************************************************ consensus_3965#0 GCCGTGTGAGGAGTCTGCGTGAAAGAAGATTGATTCCGTCAGTGCGTGAAGGATAGCACC 300 consensus_3965#1 GCCGTGTGAGGAGTCTGCGTGAAAGAAGATATACGTTCCAGCCGCGTT---GGCGGCAGC 124 ****************************** * **** * *** * consensus_3965#0 GCACCCCACGACGGTGGGTGGCCGGTAGTGGTGGAGGAGGAAACAAGGGGTTTGTCAAAC 360 consensus_3965#1 GTGTGCAGCGACACTACTCTCCTCGTCGTCGTGCCGCGACCGCGAAGGG---CGGCCACA 181 * * **** * * ** ** *** * ***** * * * consensus_3965#0 CCCGCCTCCCCTCTCTTCCCTCCCCCCCCCGCCCCTCGTTGTCTCGTTTGTTTGCTACAA 420 consensus_3965#1 TTCGTTAAGAATCTTCTAAACCTCTACAGTACGCAAAGCAAAGGTGTACAAAAAAAAAAA 241 ** *** * * * * * * * ** * ** consensus_3965#0 CCGCAAAAGGGGGACAGCCGGCGGTAGCAAAACAACAACAACAACAACAACAACAACCCA 480 consensus_3965#1 ACAACAACGAAGAAGCACCAAC--CAGCAGAACG-CGACAGTGAAG-------------- 284 * ** * * * ** * **** *** * *** * consensus_3965#0 GAAAGAAAGAAAAACGCAAAGTGAAGCACGAACGCCGCTCGCGCACGCTGCAAGGGAGGA 540 consensus_3965#1 ------------------------------------------------------------ consensus_3965#0 GGAGGGCCAACCCCGAAAGGACCGAGCACCGGAGCCCCCGAAACAAGATGAAAATACAGC 600 consensus_3965#1 ------------------------------------------------------------ consensus_3965#0 ACCAGCGGGTACGGTTTACGAGCAGCGTATTGTACGATCACAACTTTCACGACATTCAAC 660 consensus_3965#1 ------------------------------------------------------------ consensus_3965#0 ACCAGCAGCAGCAGACGCGCAAGCAGACGGACGCGAGCAGCCACGACGGAG 711 consensus_3965#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||