These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3968#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence [AGCAGTTTAATAAAAAAAAAAAATCCGTGCAGCAAAATGCCCGCTGGTGGAGCTGGCCAAGAAGCTGACCGGCCGGAGCGAGTACACGATGGCGTCGATCTACTCGCTCATGGATACGCTGTTGCCGCAGGAAAAGGAGGATGTGATCAAGGAGCTGACGCGTCGCTGCGATCAGGAGCTAACGGAGCTGCTCGGTGACAATGGGGTACTGTTCTACCACAGCACTACGCATGCGGCACCGTACCATTACGGGGCGTTCGTGAACGTGTACAACTTTAGCTACTGGTGTCTGTTTAACGTGCTGCACGTACCGGCCACCCAGGTGCCGCTCGGGCTGGATGGGGATGGGCTACCGCTCGGCATACAGGTCGTGGCCAGTCGTAACCGGGACCGGCACTGCTTGGCGGTGGCGGAAGAGATCGAGCGCGTGTTTAACGGGCGCATTCCACCGTTCATTGTGGATTAGTTGGGGTGTTTCTCAGTTTCTTTTCGCCCTAAGGACAGTCGCACTACGATGTCCAATATTGATCGGTCATGGAGGCAGAGTGAAGTGTAGGTCAGTTGGGTTATATTATTTATTCGTTAGCTTATGCAATGGTCGTGTTTGTTTGTTCTTCTTTAAATTCTTGGTCGTTAAATTAAACTCGTAACAAATAATACACCTCTTCTTCCAATGCGGTCAATTATCGTTGTACATGGCTAGTAAGAGTAGTAAGTCGAGGGAACTTTTTGGGTCATTTTGGGGGTAAAAAAGCACTAAACAAAAGCCTCTCTAAACTGAAC] [+] EMBL BX613505 [AGCAGTTTAATAAAAAAAAAAAATCCGTGCAGCAAAATGCCCGCTGGTGGAGCTGGCCAAGAAGCTGACCGGCCGGAGCGAGTACACGATGGCGTCGATCTACTCGCTCATGGATACGCTGTTGCCGCAGGAAAAGGAGGATGTGATCAAGGAGCTGACGCGTCGCTGCGATCAGGAGCTAACGGAGCTGCTCGGTGACAATGGGGTACTGTTCTACCACAGCACTACGCATGCGGCACCGTACCATTACGGGGCGTTCGTGAACGTGTACAACTTTAGCTACTGGTGTCTGTTTAACGTGCTGCACGTACCGGCCACCCAGGTGCCGCTCGGGCTGGATGGGGATGGGCTACCGCTCGGCATACAGGTCGTGGCCAGTCGTAACCGGGACCGGCACTGCTTGGCGGTGGCGGAAGAGATCGAGCGCGTGTTTAACGGGCGCATTCCACCGTTCATTGTGGATTAGTTGGGGTGTTTCTCAGTTTCTTTTCGCCCTAAGGACAGTCGCACTACGATGTCCAATATTGATCGGTCATGGAGGCAGAGTGAAGTGTAGGTCAGTTGGGTTATATTATTTATTCGTTAGCTTATGCAATGGTCGTGTTTGTTTGTTCTTCTTTAAATTCTTGGTCGTTAAATTAAACTCGTAACAAATAATACACCTCTTCTTCCAATGCGGTCAATTATCGTTGTACATGGCTAGTAAGAGTAGTAAGTCGAGGGAACTTTTTGGGTCATTTTGGGGGTAAAAAAGCACTAAACAAAAGCCTCTCTAAACTGAAC] consensusID : consensus_3968#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [ATCTGCTCCCCCTCATGCAGGTACTGGTGGGTCCGGAAAAGTGCACCAGCCTGCGCTTCGACGAACCGGTCGATGTGCGCAAGCTGCGCTACTTCTACATCACTGAATCGGGCGACATTAAGTGCAGTGCGGTGCAACCCTCGCTACAGAAAGCGATGGACCGCGTGGTGCAGCACTTTGGCGAGATTGCACCGGCCGGTGTGCGCAAGGTAACGCTCAGCGGCACCGACCGAACGACCAACATGTGGCGCTACTGGATGACGCAGGAGCCGGCCAACTTTGGCACGCTGCTGGGCAATGGGAAACCGCTCAGCCCGCTGGTGGAGCTGGCCAAGAAGCTGACCGGCCGGAGCGAGTACACGATGGCGTCGATCTACTCGCTCATGGAT] [+] EMBL BX620137 [ATCTGCTCCCCCTCATGCAGGTACTGGTGGGTCCGGAAAAGTGCACCAGCCTGCGCTTCGACGAACCGGTCGATGTGCGCAAGCTGCGCTACTTCTACATCACTGAATCGGGCGACATTAAGTGCAGTGCGGTGCAACCCTCGCTACAGAAAGCGATGGACCGCGTGGTGCAGCACTTTGGCGAGATTGCACCGGCCGGTGTGCGCAAGGTAACGCTCAGCGGCACCGACCGAACGACCAACATGTGGCGCTACTGGATGACGCAGGAGCCGGCCAACTTTGGCACGCTGCTGGGCAATGGGAAACCGCTCAGCCCGCTGGTGGAGCTGGCCAAGAAGCTGACCGGCCGGAGCGAGTACACGATGGCGTCGATCTACTCGCTCATGGAT] consensusID : consensus_3968#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [GCTGACGCGTCGCTGCCGATCAGGAGCTAACGGAGCTGCTCGGTGACGATGGGGTACTGTTCTACCACAGGACTAACCACGCGGCACCGTACCATTACGGGGCCGTTCGTGAACGTGTACAACTTTAGCTACTGGTGTCTGTTTAACGTGCTGCACGTACCAGCAACCAGGTGCCGTCGGGCTGGATGGGGATGGGCTACCGCTCGGCATACACGGTTGTGGCGAGCCGTAACCGGGACCGGCACTGCTTGGCGGTGGCGGAAAGACGATCGAGCGCGTGTTTAACCGGGCGCATTCCACCGTTCATTGTGGATTAGTNNGNGGGTGTATACATTAGTTAT] [+] EMBL AL696985 [GCTGACGCGTCGCTGCCGATCAGGAGCTAACGGAGCTGCTCGGTGACGATGGGGTACTGTTCTACCACAGGACTAACCACGCGGCACCGTACCATTACGGGGCCGTTCGTGAACGTGTACAACTTTAGCTACTGGTGTCTGTTTAACGTGCTGCACGTACCAGCAACCAGGTGCCGTCGGGCTGGATGGGGATGGGCTACCGCTCGGCATACACGGTTGTGGCGAGCCGTAACCGGGACCGGCACTGCTTGGCGGTGGCGGAAAGACGATCGAGCGCGTGTTTAACCGGGCGCATTCCACCGTTCATTGTGGATTAGTNNGNGGGTGTATACATTAGTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3968#0 AGCAGTTTAATAAAAAAAAAAAATCCGTGCAGCAAAATGCCCGCTGGTGGAGCTGGCCAA 60 consensus_3968#2 ------------------------------------------------------------ consensus_3968#1 ------------------------------------------------------------ consensus_3968#0 GAAGCTGACCGGCCGGAGCGAGTACACGATGGCGTCGATCTACTCGCTCATGGATACGCT 120 consensus_3968#2 ------------------------------------------------------------ consensus_3968#1 ------------------------------------------------------------ consensus_3968#0 GTTGCCGCAGGAAAAGGAGGATGTGATCAAGGAGCTGACGCGTCGCTGC-GATCAGGAGC 179 consensus_3968#2 ---------------------------------GCTGACGCGTCGCTGCCGATCAGGAGC 27 consensus_3968#1 --ATCTGCTCCCCCTCATGCAGGTACTGGTGGGTCCGGAAAAGTGCACCAGCCTGCGCTT 58 * * ** * * * consensus_3968#0 TAACGGAGCTGCTCGGTGACAATGGGGTACTGTTCTACCACAGCACT-ACGCATGCGGCA 238 consensus_3968#2 TAACGGAGCTGCTCGGTGACGATGGGGTACTGTTCTACCACAGGACT-AACCACGCGGCA 86 consensus_3968#1 CGACGAA-CCGGTCGATGTGCGCAAGCTGCGCTACTTCTACATCACTGAATCGGGCGACA 117 *** * * * *** ** * * * * ** * *** *** * * *** ** consensus_3968#0 CCGTAC-CATTACGGGGC-GTTCGTGAACGTGTACAACTTTAGCTAC-TGGTGT--CTGT 293 consensus_3968#2 CCGTAC-CATTACGGGGCCGTTCGTGAACGTGTACAACTTTAGCTAC-TGGTGT--CTGT 142 consensus_3968#1 TTAAGTGCAGTGCGGTGCAACCCTCGCTACAGAAAGCGATGGACCGCGTGGTGCAGCACT 177 ** * *** ** * * * * * * * ***** * * consensus_3968#0 TTAACGTG-CTGCACGTACCGGCCACCC--AGGTGCCGCTCGGGCTGGATGGG--GATGG 348 consensus_3968#2 TTAACGTG-CTGCACGTACCAGCAACC---AGGTGCCG-TCGGGCTGGATGGG--GATGG 195 consensus_3968#1 TTGGCGAGATTGCACCGGCCGGTGTGCGCAAGGTAACGCTCAG-CGGCACCGACCGAACG 236 ** ** * ***** ** * * **** ** ** * * * * * ** * consensus_3968#0 GCTACCGCTCGGCATACA-GGTCGTGGCCAGTCGTAACCGGGACCGGCACTGCTTGGCGG 407 consensus_3968#2 GCTACCGCTCGGCATACACGGTTGTGGCGAGCCGTAACCGGGACCGGCACTGCTTGGCGG 255 consensus_3968#1 ACCAACATGTGGCGCTACTGGATGACGCAGGAGCCGGCCAACTTTGGCAC-GCTGCTGGG 295 * * * *** ** * ** * ** ***** *** ** consensus_3968#0 TGGCGGAAGA--GATCGAGC-GCGTGTTTAAC-GGGC--GCATTCCACCGTTCATTGTGG 461 consensus_3968#2 TGGCGGAAAGACGATCGAGC-GCGTGTTTAACCGGGC--GCATTCCACCGTTCATTGTGG 312 consensus_3968#1 CAATGGGAAACCGCTCAGCCCGCTGGTGGAGCTGGCCAAGAAGCTGACCGGCCGGAGCGA 355 ** * * ** * ** ** * * ** * * * **** * * * consensus_3968#0 ATTAGTTGGGGTGTTTCTCAGTTTCTTTTCGCCCTAAGGACAGTCGCACTACGATGTCCA 521 consensus_3968#2 ATTAGTNNGNGGGTGTATACATTAGTTAT------------------------------- 341 consensus_3968#1 GTACACGATGGCGTCGATCTACTCGCTCATGGAT-------------------------- 389 * * ** * * * consensus_3968#0 ATATTGATCGGTCATGGAGGCAGAGTGAAGTGTAGGTCAGTTGGGTTATATTATTTATTC 581 consensus_3968#2 ------------------------------------------------------------ consensus_3968#1 ------------------------------------------------------------ consensus_3968#0 GTTAGCTTATGCAATGGTCGTGTTTGTTTGTTCTTCTTTAAATTCTTGGTCGTTAAATTA 641 consensus_3968#2 ------------------------------------------------------------ consensus_3968#1 ------------------------------------------------------------ consensus_3968#0 AACTCGTAACAAATAATACACCTCTTCTTCCAATGCGGTCAATTATCGTTGTACATGGCT 701 consensus_3968#2 ------------------------------------------------------------ consensus_3968#1 ------------------------------------------------------------ consensus_3968#0 AGTAAGAGTAGTAAGTCGAGGGAACTTTTTGGGTCATTTTGGGGGTAAAAAAGCACTAAA 761 consensus_3968#2 ------------------------------------------------------------ consensus_3968#1 ------------------------------------------------------------ consensus_3968#0 CAAAAGCCTCTCTAAACTGAAC 783 consensus_3968#2 ---------------------- consensus_3968#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||