cluster # 3974

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3974 cluster # 3974 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3974#0 length = 633 sequences # 1

consensus_3974#1 length = 612 sequences # 1
consensus_3974#2 length = 405 sequences # 1

consensusID : consensus_3974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [TTGCGACGGAACAATTCAAAACAGCAGCAGCAACAAAAGCAACAAAATAATAATGAAAGTACAGTGCGCAGGAAAACTTTTTACTCTAGAAATAGTAGCAAAACATGTAAACTAATTATTAGCCGACGAAGCAGCAGCAGAAGCCGAACAGAACAAAACCCAACAAAGTGGGAAAAACAGCAGCAACAAAGTACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAATACACAGAAATGAAACTAGAAACGAATTATAGCCGAGCAGAATCGAACAACAAGCAGAAAGTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTAACATTATTATCCGGGGCTAGTAGTGGCGCCAGTGCGGCGTACCGTTGGGTGGCAAAAAAAACACGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACACCGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTTTCCCAGGCGGGACTGTGCGATCGCTCCCAATTGCCCCGCTCCGCAGTTTGC]

[+] EMBL BX624804             [TTGCGACGGAACAATTCAAAACAGCAGCAGCAACAAAAGCAACAAAATAATAATGAAAGTACAGTGCGCAGGAAAACTTTTTACTCTAGAAATAGTAGCAAAACATGTAAACTAATTATTAGCCGACGAAGCAGCAGCAGAAGCCGAACAGAACAAAACCCAACAAAGTGGGAAAAACAGCAGCAACAAAGTACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAATACACAGAAATGAAACTAGAAACGAATTATAGCCGAGCAGAATCGAACAACAAGCAGAAAGTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTAACATTATTATCCGGGGCTAGTAGTGGCGCCAGTGCGGCGTACCGTTGGGTGGCAAAAAAAACACGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACACCGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTTTCCCAGGCGGGACTGTGCGATCGCTCCCAATTGCCCCGCTCCGCAGTTTGC]




>consensus_3974#0
TTGCGACGGAACAATTCAAAACAGCAGCAGCAACAAAAGCAACAAAATAATAATGAAAGT
ACAGTGCGCAGGAAAACTTTTTACTCTAGAAATAGTAGCAAAACATGTAAACTAATTATT
AGCCGACGAAGCAGCAGCAGAAGCCGAACAGAACAAAACCCAACAAAGTGGGAAAAACAG
CAGCAACAAAGTACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAA
TACACAGAAATGAAACTAGAAACGAATTATAGCCGAGCAGAATCGAACAACAAGCAGAAA
GTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTA
ACATTATTATCCGGGGCTAGTAGTGGCGCCAGTGCGGCGTACCGTTGGGTGGCAAAAAAA
ACACGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGC
AATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACAC
CGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTTTCCCAGGCGGGACTGTGC
GATCGCTCCCAATTGCCCCGCTCCGCAGTTTGC

consensusID : consensus_3974#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence

                              [CCGCACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAACACGCAGAAATGAAACTAGAAACGAATTATAGACGAGCAGAATCGAACAACAAGCAGAAAGTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTAACATTATTATCCGGGGTTAGTGCGGCGTACCGTTGGGTGGCAAAAAAAAAACACGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGGCGGTGACACCGTACCATACACAGCAGCAATCCTGTCTTATGAGCGCATTACCCCAGGCATTAGTCCGGGACTGTGCGATCGCTCCCAATTGACCCGCTCCGCGGTTGCATTAGAATTGTTGTTGCCCCCGTTTGGTGCTAGTGTTATGGCATACCCCTCACGTAACACCGCGCACGTTGCATGTGTATTCTAAATGATGCGACAGATGCGATCCCGTCGTGTATCGTTTTTTGGGCATTTTCCCTCATCTCTGGTATTTTTCAGGTTAGCATTTTTCTA]

[+] EMBL BM585475             [CCGCACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAACACGCAGAAATGAAACTAGAAACGAATTATAGACGAGCAGAATCGAACAACAAGCAGAAAGTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTAACATTATTATCCGGGGTTAGTGCGGCGTACCGTTGGGTGGCAAAAAAAAAACACGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGGCGGTGACACCGTACCATACACAGCAGCAATCCTGTCTTATGAGCGCATTACCCCAGGCATTAGTCCGGGACTGTGCGATCGCTCCCAATTGACCCGCTCCGCGGTTGCATTAGAATTGTTGTTGCCCCCGTTTGGTGCTAGTGTTATGGCATACCCCTCACGTAACACCGCGCACGTTGCATGTGTATTCTAAATGATGCGACAGATGCGATCCCGTCGTGTATCGTTTTTTGGGCATTTTCCCTCATCTCTGGTATTTTTCAGGTTAGCATTTTTCTA]




>consensus_3974#1
CCGCACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAACACGCAGA
AATGAAACTAGAAACGAATTATAGACGAGCAGAATCGAACAACAAGCAGAAAGTGAGAGC
AAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTAACATTATT
ATCCGGGGTTAGTGCGGCGTACCGTTGGGTGGCAAAAAAAAAACACGGTGCGATTAGTTA
CACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGC
GAACGCGTCATTACAGTGTGCATCGGATGACGGCGGTGACACCGTACCATACACAGCAGC
AATCCTGTCTTATGAGCGCATTACCCCAGGCATTAGTCCGGGACTGTGCGATCGCTCCCA
ATTGACCCGCTCCGCGGTTGCATTAGAATTGTTGTTGCCCCCGTTTGGTGCTAGTGTTAT
GGCATACCCCTCACGTAACACCGCGCACGTTGCATGTGTATTCTAAATGATGCGACAGAT
GCGATCCCGTCGTGTATCGTTTTTTGGGCATTTTCCCTCATCTCTGGTATTTTTCAGGTT
AGCATTTTTCTA

consensusID : consensus_3974#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [GCAGAATCGCGCCGAGGNNTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACACCGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTTCCCAGGCGGGACTGTGCGATCGCTCCCAATTGCCCCGCTCCGCAGTTGCGTTAGAATTGTTGTTGCCCCCGGTTTGGTGCTAGTGTATATGTGTGTTATGGCATACCCCTCACGTAACACCGCGCACGTTGCATGTTGCATTCTAAATGATGCGGCAGATGCGATCCCGTCGTGTATCGGTTTTTGGGCATTTTCCCTCATCTCTGGTATTATTCAAGGTTAGCATTTTTCTAGGTACAC]

[+] EMBL AL697055             [GCAGAATCGCGCCGAGGNNTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACACCGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTTCCCAGGCGGGACTGTGCGATCGCTCCCAATTGCCCCGCTCCGCAGTTGCGTTAGAATTGTTGTTGCCCCCGGTTTGGTGCTAGTGTATATGTGTGTTATGGCATACCCCTCACGTAACACCGCGCACGTTGCATGTTGCATTCTAAATGATGCGGCAGATGCGATCCCGTCGTGTATCGGTTTTTGGGCATTTTCCCTCATCTCTGGTATTATTCAAGGTTAGCATTTTTCTAGGTACAC]




>consensus_3974#2
GCAGAATCGCGCCGAGGNNTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTG
TGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGA
CACCGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTTCCCAGGCGGGACTGT
GCGATCGCTCCCAATTGCCCCGCTCCGCAGTTGCGTTAGAATTGTTGTTGCCCCCGGTTT
GGTGCTAGTGTATATGTGTGTTATGGCATACCCCTCACGTAACACCGCGCACGTTGCATG
TTGCATTCTAAATGATGCGGCAGATGCGATCCCGTCGTGTATCGGTTTTTGGGCATTTTC
CCTCATCTCTGGTATTATTCAAGGTTAGCATTTTTCTAGGTACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3974#1      ------------------------------------------------------------
consensus_3974#2      ------------------------------------------------------------
consensus_3974#0      TTGCGACGGAACAATTCAAAACAGCAGCAGCAACAAAAGCAACAAAATAATAATGAAAGT 60
                                                                                  

consensus_3974#1      ------------------------------------------------------------
consensus_3974#2      ------------------------------------------------------------
consensus_3974#0      ACAGTGCGCAGGAAAACTTTTTACTCTAGAAATAGTAGCAAAACATGTAAACTAATTATT 120
                                                                                  

consensus_3974#1      ------------------------------------------------------------
consensus_3974#2      ------------------------------------------------------------
consensus_3974#0      AGCCGACGAAGCAGCAGCAGAAGCCGAACAGAACAAAACCCAACAAAGTGGGAAAAACAG 180
                                                                                  

consensus_3974#1      --------CCGCACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAA 52
consensus_3974#2      ------------------------------------------------------------
consensus_3974#0      CAGCAACAAAGTACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAA 240
                                                                                  

consensus_3974#1      CACGCAGAAATGAAACTAGAAACGAATTATAGACGAGCAGAATCGAACAACAAGCAGAAA 112
consensus_3974#2      ------------------------------------------------------------
consensus_3974#0      TACACAGAAATGAAACTAGAAACGAATTATAGCCGAGCAGAATCGAACAACAAGCAGAAA 300
                                                                                  

consensus_3974#1      GTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTA 172
consensus_3974#2      ------------------------------------------------------------
consensus_3974#0      GTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTA 360
                                                                                  

consensus_3974#1      ACATTATTATCCGGGGTTAGT----GCGGCGTACCGTTGGGTGGCAAAAAAAAAACA--- 225
consensus_3974#2      ---------------------------------------------------GCAGAA--- 6
consensus_3974#0      ACATTATTATCCGGGGCTAGTAGTGGCGCCAGTGCGGCGTACCGTTGGGTGGCAAAAAAA 420
                                                                           *  *   

consensus_3974#1      ---CGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGC 282
consensus_3974#2      ---TCGCGCCGAGGNNTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGC 63
consensus_3974#0      ACACGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGC 480
                           * **       ********************************************

consensus_3974#1      AATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGGCGGTGACAC 342
consensus_3974#2      AATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACAC 123
consensus_3974#0      AATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACAC 540
                      **************************************************  ********

consensus_3974#1      CGTACCATACACAGCAGCAATCCTGTCTTATGAGCGCATTAC-CCCAGGCATTAGTCCGG 401
consensus_3974#2      CGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTT-CCCAGGC--------GG 174
consensus_3974#0      CGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTTTCCCAGGC--------GG 592
                      ********************* ******************   *******        **

consensus_3974#1      GACTGTGCGATCGCTCCCAATTGACCCGCTCCGCGGTT-GCATTAGAATTGTTGTTGCCC 460
consensus_3974#2      GACTGTGCGATCGCTCCCAATTGCCCCGCTCCGCAGTT-GCGTTAGAATTGTTGTTGCCC 233
consensus_3974#0      GACTGTGCGATCGCTCCCAATTGCCCCGCTCCGCAGTTTGC------------------- 633
                      *********************** ********** *** **                   

consensus_3974#1      CCG-TTTGGTGCTAGTGT----------TATGGCATACCCCTCACGTAACACCGCGCACG 509
consensus_3974#2      CCGGTTTGGTGCTAGTGTATATGTGTGTTATGGCATACCCCTCACGTAACACCGCGCACG 293
consensus_3974#0      ------------------------------------------------------------
                                                                                  

consensus_3974#1      TTGCATGT-GTATTCTAAATGATGCGACAGATGCGATCCCGTCGTGTATCGTTTTTTGGG 568
consensus_3974#2      TTGCATGTTGCATTCTAAATGATGCGGCAGATGCGATCCCGTCGTGTATCGGTTTTTGGG 353
consensus_3974#0      ------------------------------------------------------------
                                                                                  

consensus_3974#1      CATTTTCCCTCATCTCTGGTATTTTTCA-GGTTAGCATTTTTCTA------- 612
consensus_3974#2      CATTTTCCCTCATCTCTGGTATTATTCAAGGTTAGCATTTTTCTAGGTACAC 405
consensus_3974#0      ----------------------------------------------------