cluster # 3976

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Anopheles gambiae
cluster # 3976 cluster # 3976 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3976#0 length = 673 sequences # 1

consensus_3976#1 length = 659 sequences # 1
consensus_3976#2 length = 442 sequences # 1

consensusID : consensus_3976#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [CCGTGTTCCCTTCGTCCTGTGGCGATAAGTTTACCTTCTCGAAGTGTTTCGCCGTGCTGTTGAGCATTTCCGGCGCGGTAATGGTTTCGATGTCGGAAATCGATCAGCCGAAAATGTCACGCGGCATCGTGCTCGCCCTGTTGAGTGCATTCTTCTACGCGTCCTATCTGGTGCTAGTCAAGCGTAAAAGCGACACGGAAGAAAAGATTAGCATTCCCCTGTTCTTTGGCTTTGTGGGGCTGTGGAATTTGCTGCTGCTGTGGCCGCTGCTTTTTGTGCTAAACTTTTCCCAGCTCGAAGTGTTCGAGCTACCCTCCCGGCGACAGTTTATTGTTCTGTTTCTGAACGGGCTCATCGGCACGGTACTGTCCGAGGCACTGTGGCTATGGGGCTGCTTTCTAACGTCATCCCTTATCGGCACGGTCGCCATATCGCTACAGATACCGCTGGCGATGCTGTTCGACATGGTGCTGCACGGTAAAACCTACCCGCTACTGTTCTATCTCGGCTCACTGCCCATGTTCCTTTCGCTGGTGCTGGTGGCCTTTTCTGGTGAAGTTTGATGACTGTGATCCCCTGCTAAAGTTCGGCAAGCTAATGTACCGGCGGCTGTGGAACTGCCGGAAAGCGAACGTTGTGCGAATACCGGATCTGGAGGAGCAGCACGAGTCCC]

[+] EMBL BM584249             [CCGTGTTCCCTTCGTCCTGTGGCGATAAGTTTACCTTCTCGAAGTGTTTCGCCGTGCTGTTGAGCATTTCCGGCGCGGTAATGGTTTCGATGTCGGAAATCGATCAGCCGAAAATGTCACGCGGCATCGTGCTCGCCCTGTTGAGTGCATTCTTCTACGCGTCCTATCTGGTGCTAGTCAAGCGTAAAAGCGACACGGAAGAAAAGATTAGCATTCCCCTGTTCTTTGGCTTTGTGGGGCTGTGGAATTTGCTGCTGCTGTGGCCGCTGCTTTTTGTGCTAAACTTTTCCCAGCTCGAAGTGTTCGAGCTACCCTCCCGGCGACAGTTTATTGTTCTGTTTCTGAACGGGCTCATCGGCACGGTACTGTCCGAGGCACTGTGGCTATGGGGCTGCTTTCTAACGTCATCCCTTATCGGCACGGTCGCCATATCGCTACAGATACCGCTGGCGATGCTGTTCGACATGGTGCTGCACGGTAAAACCTACCCGCTACTGTTCTATCTCGGCTCACTGCCCATGTTCCTTTCGCTGGTGCTGGTGGCCTTTTCTGGTGAAGTTTGATGACTGTGATCCCCTGCTAAAGTTCGGCAAGCTAATGTACCGGCGGCTGTGGAACTGCCGGAAAGCGAACGTTGTGCGAATACCGGATCTGGAGGAGCAGCACGAGTCCC]




>consensus_3976#0
CCGTGTTCCCTTCGTCCTGTGGCGATAAGTTTACCTTCTCGAAGTGTTTCGCCGTGCTGT
TGAGCATTTCCGGCGCGGTAATGGTTTCGATGTCGGAAATCGATCAGCCGAAAATGTCAC
GCGGCATCGTGCTCGCCCTGTTGAGTGCATTCTTCTACGCGTCCTATCTGGTGCTAGTCA
AGCGTAAAAGCGACACGGAAGAAAAGATTAGCATTCCCCTGTTCTTTGGCTTTGTGGGGC
TGTGGAATTTGCTGCTGCTGTGGCCGCTGCTTTTTGTGCTAAACTTTTCCCAGCTCGAAG
TGTTCGAGCTACCCTCCCGGCGACAGTTTATTGTTCTGTTTCTGAACGGGCTCATCGGCA
CGGTACTGTCCGAGGCACTGTGGCTATGGGGCTGCTTTCTAACGTCATCCCTTATCGGCA
CGGTCGCCATATCGCTACAGATACCGCTGGCGATGCTGTTCGACATGGTGCTGCACGGTA
AAACCTACCCGCTACTGTTCTATCTCGGCTCACTGCCCATGTTCCTTTCGCTGGTGCTGG
TGGCCTTTTCTGGTGAAGTTTGATGACTGTGATCCCCTGCTAAAGTTCGGCAAGCTAATG
TACCGGCGGCTGTGGAACTGCCGGAAAGCGAACGTTGTGCGAATACCGGATCTGGAGGAG
CAGCACGAGTCCC

consensusID : consensus_3976#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [CCGCCCACGCGTCCGGGCACTGTGGCTATGGGGCTGCTTTCTAACGTCGTCCCTTATCGGCACGGTCGCCATATCGCTACAGATACCGCTGGCGATGCTGTTCGACATGGTGCTGCACGGTAAAACCTACCCGCTACTGTTCTATCTCGGCTCACTGCCCATGTTCCTTTCACTGGTGCTGGTGGCCTTTCTGGTGAAGTTTGATGACTGTGATCCGCTGCTAAAGTTCGGCAAGCTAATGTACCGGCGGCTGTGGAACTGCCGGAAAGCGAACGTTGTACGAATACCGGATCTGGAGGAGCAGCACGAGTCCCTCATCGACGGTAGTCATGAAAACTAGAGCGGGAATGAACCGTACGTGGCGTCTGTTTTGCTCTCGGGTTAGTTACACACAAACACATCACAGTAGTTCTATCCGGTGCTCAGCGGTTTTGTATCGTTTCTCGGATCACTATCCTTTGGTCGGGGATCATCAGCACAGTGATGCGCCACAGAAGTCGTCATCAGCTTTTGGCCATTTTATTGGATTTTCATAACTTTAACTGGCAGAGTGCAATTCGCTAAGGAACAAGGCGTTCAACAGCGATCGTTTTTTTTTTTAGTCTAATTTTGACGATTCCTGATCAATTTCTCGTGATTTTGTTTAAGTAGAAATTTTT]

[+] EMBL BM639584             [CCGCCCACGCGTCCGGGCACTGTGGCTATGGGGCTGCTTTCTAACGTCGTCCCTTATCGGCACGGTCGCCATATCGCTACAGATACCGCTGGCGATGCTGTTCGACATGGTGCTGCACGGTAAAACCTACCCGCTACTGTTCTATCTCGGCTCACTGCCCATGTTCCTTTCACTGGTGCTGGTGGCCTTTCTGGTGAAGTTTGATGACTGTGATCCGCTGCTAAAGTTCGGCAAGCTAATGTACCGGCGGCTGTGGAACTGCCGGAAAGCGAACGTTGTACGAATACCGGATCTGGAGGAGCAGCACGAGTCCCTCATCGACGGTAGTCATGAAAACTAGAGCGGGAATGAACCGTACGTGGCGTCTGTTTTGCTCTCGGGTTAGTTACACACAAACACATCACAGTAGTTCTATCCGGTGCTCAGCGGTTTTGTATCGTTTCTCGGATCACTATCCTTTGGTCGGGGATCATCAGCACAGTGATGCGCCACAGAAGTCGTCATCAGCTTTTGGCCATTTTATTGGATTTTCATAACTTTAACTGGCAGAGTGCAATTCGCTAAGGAACAAGGCGTTCAACAGCGATCGTTTTTTTTTTTAGTCTAATTTTGACGATTCCTGATCAATTTCTCGTGATTTTGTTTAAGTAGAAATTTTT]




>consensus_3976#1
CCGCCCACGCGTCCGGGCACTGTGGCTATGGGGCTGCTTTCTAACGTCGTCCCTTATCGG
CACGGTCGCCATATCGCTACAGATACCGCTGGCGATGCTGTTCGACATGGTGCTGCACGG
TAAAACCTACCCGCTACTGTTCTATCTCGGCTCACTGCCCATGTTCCTTTCACTGGTGCT
GGTGGCCTTTCTGGTGAAGTTTGATGACTGTGATCCGCTGCTAAAGTTCGGCAAGCTAAT
GTACCGGCGGCTGTGGAACTGCCGGAAAGCGAACGTTGTACGAATACCGGATCTGGAGGA
GCAGCACGAGTCCCTCATCGACGGTAGTCATGAAAACTAGAGCGGGAATGAACCGTACGT
GGCGTCTGTTTTGCTCTCGGGTTAGTTACACACAAACACATCACAGTAGTTCTATCCGGT
GCTCAGCGGTTTTGTATCGTTTCTCGGATCACTATCCTTTGGTCGGGGATCATCAGCACA
GTGATGCGCCACAGAAGTCGTCATCAGCTTTTGGCCATTTTATTGGATTTTCATAACTTT
AACTGGCAGAGTGCAATTCGCTAAGGAACAAGGCGTTCAACAGCGATCGTTTTTTTTTTT
AGTCTAATTTTGACGATTCCTGATCAATTTCTCGTGATTTTGTTTAAGTAGAAATTTTT

consensusID : consensus_3976#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [CAGATCGCCCGAGGTTATAAATACAATAATTCGTCGAAGCTCGCACTATCGCCCGGTTTTTTAGGTGTTTTATCGTTCGCACAAGTGTCCCAGTGAATTGTTTTAGGATAAATTGTGCTCGAAGGGGGAATACAGGACCCGAATAACAAGCTAACAATACGCAGGGATTTAAATCACATACACACACACACTCATCAGCTTTTGGCCATTTTATTGGACTTTCATAACTTTAACTGGCAGAGTGCAATTCGCTAAGGAACAATGCGTTCAACAGCGATCGTTTTTTTAGTCTAATTTTGACGATTCCTGATCAATTTCTCGTGATTTTGTTTTAGTGGAAATTTTTGGAGATTAATTTACATCACCAAAGTGTTCTTGCTGATACGAGGTGTATTTTCGGACCGTGCTTTCATTCGTGATGCGGTTTTAGCGGGCAAGGTGC]

[+] EMBL AL697060             [CAGATCGCCCGAGGTTATAAATACAATAATTCGTCGAAGCTCGCACTATCGCCCGGTTTTTTAGGTGTTTTATCGTTCGCACAAGTGTCCCAGTGAATTGTTTTAGGATAAATTGTGCTCGAAGGGGGAATACAGGACCCGAATAACAAGCTAACAATACGCAGGGATTTAAATCACATACACACACACACTCATCAGCTTTTGGCCATTTTATTGGACTTTCATAACTTTAACTGGCAGAGTGCAATTCGCTAAGGAACAATGCGTTCAACAGCGATCGTTTTTTTAGTCTAATTTTGACGATTCCTGATCAATTTCTCGTGATTTTGTTTTAGTGGAAATTTTTGGAGATTAATTTACATCACCAAAGTGTTCTTGCTGATACGAGGTGTATTTTCGGACCGTGCTTTCATTCGTGATGCGGTTTTAGCGGGCAAGGTGC]




>consensus_3976#2
CAGATCGCCCGAGGTTATAAATACAATAATTCGTCGAAGCTCGCACTATCGCCCGGTTTT
TTAGGTGTTTTATCGTTCGCACAAGTGTCCCAGTGAATTGTTTTAGGATAAATTGTGCTC
GAAGGGGGAATACAGGACCCGAATAACAAGCTAACAATACGCAGGGATTTAAATCACATA
CACACACACACTCATCAGCTTTTGGCCATTTTATTGGACTTTCATAACTTTAACTGGCAG
AGTGCAATTCGCTAAGGAACAATGCGTTCAACAGCGATCGTTTTTTTAGTCTAATTTTGA
CGATTCCTGATCAATTTCTCGTGATTTTGTTTTAGTGGAAATTTTTGGAGATTAATTTAC
ATCACCAAAGTGTTCTTGCTGATACGAGGTGTATTTTCGGACCGTGCTTTCATTCGTGAT
GCGGTTTTAGCGGGCAAGGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3976#0      CCGTGTTCCCTTC---GTCCTGTGGCGATAAGTTTACCTTCTCGAAGTGTTTCGCCGTGC 57
consensus_3976#1      CCGCCCACGCGTCCGGGCACTGTGGCTATGGGGCTGCTTTCT---AACGTCGTCCCTTAT 57
consensus_3976#2      ------------------------------------------------------------
                                                                                  

consensus_3976#0      TGTTGAGCATTTCCGGCGCGGTAATGGTTTCGATGTCGGAAATCGATCAGCCGAAAATGT 117
consensus_3976#1      CGGCACG-GTCGCCATATCGCTACAGATACCGCTGGCG-ATGCTGTTCGAC--ATGGTGC 113
consensus_3976#2      ------------------------------------------------------------
                                                                                  

consensus_3976#0      CACGCGGCATCGTGCTCGCCCTGTTGAGTGCATTCTTCTACGCGTCCTATCTGGTGCTAG 177
consensus_3976#1      TGCACGGTAAAACCTACCCGCTACTGT-TCTATCTCGGCTCACTGCCCATGTTCCTTTCA 172
consensus_3976#2      ------------------------------------------------------------
                                                                                  

consensus_3976#0      TCAAGCGTAAAAGCGACACGGAAGAAAAG-ATTAGCATTCCCCTGTTCTTTGGCTTTGTG 236
consensus_3976#1      CTGGTGCTGGTGGCCTTTCTGGTGAAGTTTGATGACTGTGATCCGCTGCTAAAGTTCGGC 232
consensus_3976#2      ---------------------------------CAGATCGCCCGAGGTTATAAATACAAT 27
                                                                *           *     

consensus_3976#0      GGGCTGTGGAATTTGCTGCTGCTGTGGCCGCTGCTTTTTG--TGCTAAACTTTTCCCAGC 294
consensus_3976#1      AAGCTAATGTACCGGCGGCTG-TGGAACTGCCGGAAAGCGAACGTTGTACGAATACCGGA 291
consensus_3976#2      AATTCGTCGAA---GCTCGCACTATCGCC-CGGTTTTTTAGGTGTTTTATCGTTCGCAC- 82
                              * *   **      *    *  * *          * *  *    *  *   

consensus_3976#0      TC-GAAGTGTTCGAGCTACCCTCCCGGCGACAGTTTATTGTTCTGTTTCTGAACGGGCTC 353
consensus_3976#1      TCTGGAGGAGCAGCACGAGTCCCTCATCGACGGTA-GTCATGAAAACTAGAGCGGGAATG 350
consensus_3976#2      ----AAGTGTCCCAGTGAATTGTTTTAGGATAAATTGT-GCTCGAAGGGGGAATACAG-G 136
                           **          *          **       *                      

consensus_3976#0      ATCGGCACGGTACTGTCCGAGGCACTGTGGCTATGGGGCTGCTTTCTAACGTCATCCCTT 413
consensus_3976#1      AACCGTACG-TGGCGTCTG------TTTTGCTCTCGGGTTAGTTAC--ACACAAACACAT 401
consensus_3976#2      ACCCGAATAACAA-GCTAACAATACGCAGGGATTTAAATCACATACACACACACACTCAT 195
                      * * * *       *              *   *         * *  **     * * *

consensus_3976#0      ATCGGCACGGTCGCCATATC-GCTACAGATACCGCTGGC-GATGCTGTTCGACATGGTGC 471
consensus_3976#1      -----CACAGTAGTTCTATCCGGTGCTCAGCGGTTTTGT-ATCGTTTCTCGGATCACTAT 455
consensus_3976#2      CAGCTTTTGGCCATTTTATTGGACTTTCATAACTTTAACTGGCAGAGTGCAATTCGCTAA 255
                               *      ***  *      *      *             *       *  

consensus_3976#0      TGCACGGTAAAACCTACCCGCTACTGTTCTATCTCGGCTCACTGCCCATGTTCCTTTCGC 531
consensus_3976#1      CCTTTGGTCGGGGATCATCAGCACAGTGATGCGCCACAGAAGTCGTCATCAGCTTTTGGC 515
consensus_3976#2      GGAACAAT-GCGTTCAACAGCGATCGTTTT--TTTAGTCTAATTTTGACGATTCCTGATC 312
                             *              *  **  *          * *    *       *   *

consensus_3976#0      TGGTGCTGGTGGCCTT-TTCTGG-TGAAGTTTGATGACTGTGATCCCC--TGCTAAAGTT 587
consensus_3976#1      CATT-TTATTGGATTT-TCATAACTTTAACTGGCAGAGTGCAATTC-----GCTAAGGAA 568
consensus_3976#2      AATTTCTCGTGATTTTGTTTTAGTGGAAATTTTTGGAGATTAATTTACATCACCAAAGTG 372
                         *  *  **   ** *  *      *  *    **     **        * ** *  

consensus_3976#0      CGGCAAGCTAATGTACCGGCGGCTGTGGAACTGCCGGAAAGCGAACGTTGTGCGAATACC 647
consensus_3976#1      CAAGGCGTTCAACAGCGATCGTTTTTTTTTTTAGTCTAATTTTGACGATTCCTGATCAAT 628
consensus_3976#2      TT-CTTGCTGATACGAGGTGTATTTTCGGACCGTGCTTTCATTCGTGATGCGGTTTTAGC 431
                            * * *            * *                    * *        *  

consensus_3976#0      GGATCTGGA----GGAGCAGCACGAGTCCC- 673
consensus_3976#1      TTCTCGTGATTTTGTTTAAGTAGAAATTTTT 659
consensus_3976#2      GGGCAAGGTGC-------------------- 442
                             *