cluster # 3978

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Anopheles gambiae
cluster # 3978 cluster # 3978 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3978#0 length = 765 sequences # 1

consensus_3978#1 length = 502 sequences # 1
consensus_3978#2 length = 390 sequences # 1

consensusID : consensus_3978#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence

                              [GCCAAGAATCGGCACGAGGCGCACGGCACACTTGTAGTTCCTAATCATGACGCGCCGTTCTCTGCTCTGGTTTGCCCTATCGTTGGCAGTGCTTGCCATCAACGTGAGTGAACAGTAATGGTGTCGAGGCTGCCAGATTAGTGCATCTTGTTTGATCTCTCTCTCTATCGTGATCTTTCCTTTTCAAATTCACTTCCAGCTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCAACAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGGTGAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGAGTTCCTCGGAAACGATCACCCAGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTGCTCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGCGAGTCGAGCTCGTCGGCATCGATCACGGTGTCCGCCAGCTTCTCGTCCCGTTGGGACGTGTATGAACACCAAAATGCAGCGTCCGTCAGTGCGACGTTCAGCGCATTCAGGCACCGGGCACAGGTCNACAGGTACGTTTTAGCATTCCATTCACCAGGCTCGTCCGTCCCCCGGTCTCCCTGTTCAACCATTGCCGGTTTCAGAGGGGTTCTCGAAACAACGGGCCCCAAGGACCTCGGGTCAACNCCAGGGCGGGGAGAATCAGNTTCCAAGGAACTGGGTTGAANAGAGCGAAAAAACAAGAGCA]

[+] EMBL BX469863             [GCCAAGAATCGGCACGAGGCGCACGGCACACTTGTAGTTCCTAATCATGACGCGCCGTTCTCTGCTCTGGTTTGCCCTATCGTTGGCAGTGCTTGCCATCAACGTGAGTGAACAGTAATGGTGTCGAGGCTGCCAGATTAGTGCATCTTGTTTGATCTCTCTCTCTATCGTGATCTTTCCTTTTCAAATTCACTTCCAGCTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCAACAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGGTGAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGAGTTCCTCGGAAACGATCACCCAGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTGCTCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGCGAGTCGAGCTCGTCGGCATCGATCACGGTGTCCGCCAGCTTCTCGTCCCGTTGGGACGTGTATGAACACCAAAATGCAGCGTCCGTCAGTGCGACGTTCAGCGCATTCAGGCACCGGGCACAGGTCNACAGGTACGTTTTAGCATTCCATTCACCAGGCTCGTCCGTCCCCCGGTCTCCCTGTTCAACCATTGCCGGTTTCAGAGGGGTTCTCGAAACAACGGGCCCCAAGGACCTCGGGTCAACNCCAGGGCGGGGAGAATCAGNTTCCAAGGAACTGGGTTGAANAGAGCGAAAAAACAAGAGCA]




>consensus_3978#0
GCCAAGAATCGGCACGAGGCGCACGGCACACTTGTAGTTCCTAATCATGACGCGCCGTTC
TCTGCTCTGGTTTGCCCTATCGTTGGCAGTGCTTGCCATCAACGTGAGTGAACAGTAATG
GTGTCGAGGCTGCCAGATTAGTGCATCTTGTTTGATCTCTCTCTCTATCGTGATCTTTCC
TTTTCAAATTCACTTCCAGCTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCAA
CAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGGT
GAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGAG
TTCCTCGGAAACGATCACCCAGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTGCT
CGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGCGAGTCGAGCTCGTCGGCATCGA
TCACGGTGTCCGCCAGCTTCTCGTCCCGTTGGGACGTGTATGAACACCAAAATGCAGCGT
CCGTCAGTGCGACGTTCAGCGCATTCAGGCACCGGGCACAGGTCNACAGGTACGTTTTAG
CATTCCATTCACCAGGCTCGTCCGTCCCCCGGTCTCCCTGTTCAACCATTGCCGGTTTCA
GAGGGGTTCTCGAAACAACGGGCCCCAAGGACCTCGGGTCAACNCCAGGGCGGGGAGAAT
CAGNTTCCAAGGAACTGGGTTGAANAGAGCGAAAAAACAAGAGCA

consensusID : consensus_3978#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [GCAAGAATCGCCGACGGGNTTTTATAATCATTTCGACCGAAGAGGATACTATTACGCACGGGACACTGGGTAGTTCCTAATCATGACGCGCCGNTCTCTGCTCTGGTTTGCCCTATCGTTGGCAGTGCTTGCCATCAAACTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCAACAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGGTGAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGAGTTCCTCGGAAACGATCACCCCAGTTCTGACGAGCGAAAGCATCAGCCAGAATGCACTGCTCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGCAGTCGAGCTCGTCGGCATCGATCACGGTGTCCGCCAGCTTCTCGTCCGTTGGGACGTGTATGAACACCAAAATGCAAGCGTCCGTCAGTGCGACGTTCAGCGCA]

[+] EMBL AL929726             [GCAAGAATCGCCGACGGGNTTTTATAATCATTTCGACCGAAGAGGATACTATTACGCACGGGACACTGGGTAGTTCCTAATCATGACGCGCCGNTCTCTGCTCTGGTTTGCCCTATCGTTGGCAGTGCTTGCCATCAAACTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCAACAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGGTGAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGAGTTCCTCGGAAACGATCACCCCAGTTCTGACGAGCGAAAGCATCAGCCAGAATGCACTGCTCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGCAGTCGAGCTCGTCGGCATCGATCACGGTGTCCGCCAGCTTCTCGTCCGTTGGGACGTGTATGAACACCAAAATGCAAGCGTCCGTCAGTGCGACGTTCAGCGCA]




>consensus_3978#1
GCAAGAATCGCCGACGGGNTTTTATAATCATTTCGACCGAAGAGGATACTATTACGCACG
GGACACTGGGTAGTTCCTAATCATGACGCGCCGNTCTCTGCTCTGGTTTGCCCTATCGTT
GGCAGTGCTTGCCATCAAACTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCAA
CAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGGT
GAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGAG
TTCCTCGGAAACGATCACCCCAGTTCTGACGAGCGAAAGCATCAGCCAGAATGCACTGCT
CGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGCAGTCGAGCTCGTCGGCATCGAT
CACGGTGTCCGCCAGCTTCTCGTCCGTTGGGACGTGTATGAACACCAAAATGCAAGCGTC
CGTCAGTGCGACGTTCAGCGCA

consensusID : consensus_3978#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [GGNCAGATTCGCGCNGAGGTAATACTGTCAGCCTGCGCAACGATATGTCGTTCATCTGATAGAGTCCTCGGAAACGATCACCAGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTGTCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGGNGTCGAGCTCGCTCGGGATCTGATCACAGGGTGTCCGGCAGACTTCTCGTCCGTTGGGACGTGTATGAACACCAAAATGCAAGCGTCCGTCAGTGCGACGTTCAGCGCATTCAGCACGGCACAGTCACAGTACTTTAGCATCATCACCAGCTCGTCCTCCCCGTTCCTGTCCACCTGCCGTTCGCGGTTCTCGAACACGGCCAGGACTCGGTCAACCAGGCGGGGCGATCG]

[+] EMBL AL697077             [GGNCAGATTCGCGCNGAGGTAATACTGTCAGCCTGCGCAACGATATGTCGTTCATCTGATAGAGTCCTCGGAAACGATCACCAGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTGTCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGGNGTCGAGCTCGCTCGGGATCTGATCACAGGGTGTCCGGCAGACTTCTCGTCCGTTGGGACGTGTATGAACACCAAAATGCAAGCGTCCGTCAGTGCGACGTTCAGCGCATTCAGCACGGCACAGTCACAGTACTTTAGCATCATCACCAGCTCGTCCTCCCCGTTCCTGTCCACCTGCCGTTCGCGGTTCTCGAACACGGCCAGGACTCGGTCAACCAGGCGGGGCGATCG]




>consensus_3978#2
GGNCAGATTCGCGCNGAGGTAATACTGTCAGCCTGCGCAACGATATGTCGTTCATCTGAT
AGAGTCCTCGGAAACGATCACCAGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTG
TCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGGNGTCGAGCTCGCTCGGGATCT
GATCACAGGGTGTCCGGCAGACTTCTCGTCCGTTGGGACGTGTATGAACACCAAAATGCA
AGCGTCCGTCAGTGCGACGTTCAGCGCATTCAGCACGGCACAGTCACAGTACTTTAGCAT
CATCACCAGCTCGTCCTCCCCGTTCCTGTCCACCTGCCGTTCGCGGTTCTCGAACACGGC
CAGGACTCGGTCAACCAGGCGGGGCGATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3978#0      GCCAAGAATCGGCACGAGGCGCACGGCACACTTGTAGTTCCTAATCATGACGCGCCGTTC 60
consensus_3978#1      --------------------------------------------GCAAGAATCGCCGA-- 14
consensus_3978#2      ------------------------------------------------------------
                                                                                  

consensus_3978#0      TCTGCTCTGGTTTGCCCTATCGTTGGCAGTGCTTGCCATCAACGTGAGTGAACAGTAATG 120
consensus_3978#1      -CGGGNTTTTATAATCATTTCGACCGAAGAGGATACTATTA-CGCACGGGACACTGGGTA 72
consensus_3978#2      ------------------------------------------------------------
                                                                                  

consensus_3978#0      GTGTCGAGGC-TGCCAGATTAGTGCATCTTGTTTGATCTCTCTCTCTATCGTGATCTTTC 179
consensus_3978#1      GTTCCTAATCATGACGCGCCGNTC--TCTGCTCTGGT---TTGCCCTATCGTTGGCAGTG 127
consensus_3978#2      ------------------------------------------------------------
                                                                                  

consensus_3978#0      CTTTTCAAATTCACTTCCAGCTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCA 239
consensus_3978#1      CTTGCCA--------TCAAACTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCA 179
consensus_3978#2      ------------------------------------------------------------
                                                                                  

consensus_3978#0      ACAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGG 299
consensus_3978#1      ACAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGG 239
consensus_3978#2      ---------------------------------------------------------GGN 3
                                                                                * 

consensus_3978#0      TGAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGA 359
consensus_3978#1      TGAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGA 299
consensus_3978#2      CAGATTCGCGCNGAGGTAATACTGTCAGCCTGCGCAACGATATGTCGTTC-ATCTGATAG 62
                         *      *      **    *************************** ******   

consensus_3978#0      GTTCCTCGGAAACGATCACCCAGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTGC 419
consensus_3978#1      GTTCCTCGGAAACGATCACCCCAGTTCTGACGAGCGAAAGCATCAGCCAGAATGCACTGC 359
consensus_3978#2      AGTCCTCGGAAACGATCACC-AGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTG- 120
                        ******************    * ********************************* 

consensus_3978#0      TCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGCGAGTCGAGCTCG-TCGGCATC 478
consensus_3978#1      TCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGC-AGTCGAGCTCG-TCGGCATC 417
consensus_3978#2      TCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGG-NGTCGAGCTCGCTCGGGATC 179
                      **************************************   ********** **** ***

consensus_3978#0      -GATCAC--GGTGTCCGCCAG-CTTCTCGTCCCGTTGGGACGTGTATGAACACCAAAATG 534
consensus_3978#1      -GATCAC--GGTGTCCGCCAG-CTTCTCGTCC-GTTGGGACGTGTATGAACACCAAAATG 472
consensus_3978#2      TGATCACAGGGTGTCCGGCAGACTTCTCGTCC-GTTGGGACGTGTATGAACACCAAAATG 238
                       ******  ******** *** ********** ***************************

consensus_3978#0      CA-GCGTCCGTCAGTGCGACGTTCAGCGCATTCAGGCACCGGGCACAGGTCNACAGGTAC 593
consensus_3978#1      CAAGCGTCCGTCAGTGCGACGTTCAGCGCA------------------------------ 502
consensus_3978#2      CAAGCGTCCGTCAGTGCGACGTTCAGCGCATTCAGCACGGCACAGTCACAGTACTTTAGC 298
                      ** ***************************                              

consensus_3978#0      GTTTTAGCATTCCATTCACCAGGCTCGTCCGTCCCCCGGTCTCCCTGTTCAACCATTGCC 653
consensus_3978#1      ------------------------------------------------------------
consensus_3978#2      ATCATCACCAGCTCGTCCTCCCCGTTCCTGTCCACCTGCCGTTCGCGGTTCTCGAACACG 358
                                                                                  

consensus_3978#0      GGTTTCAGAGGGGTTCTCGAAACAACGGGCCCCAAGGACCTCGGGTCAACNCCAGGGCGG 713
consensus_3978#1      ------------------------------------------------------------
consensus_3978#2      GCCAGGACTCGGTCAACCAGGCGGGGCGATCG---------------------------- 390
                                                                                  

consensus_3978#0      GGAGAATCAGNTTCCAAGGAACTGGGTTGAANAGAGCGAAAAAACAAGAGCA 765
consensus_3978#1      ----------------------------------------------------
consensus_3978#2      ----------------------------------------------------