These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3980#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence [CCGCGGCTGGTGACATGTCCGGCCCCGTGCCGATGGATACGTCCGAAGAGGGCAGTGGGATGGGAGCGGACAGTCCTTCCTCGTCCCCGGAAAAGAAAGGCGATGACGTTTCGAGTGCTTCGGAGTACTTCGATCCAAAGGAACGGTCAAAGGAGCGCAAAAGACGGTCGAGATGAACCGCACGGACGACAAGCGCAGCAACGCGATGGCAATGCTGAAGGCGAAGCGCGAGGGCAAGGCGAAACGGGAGGAGGAGGAAGCGAAGCGCGAGGCACAGCGAAAGCAGGACGCCAGCCAGCAGGAGGACAAGGAGGAGCTGGCCGACGTGCCCGGCGGCAAGTCGCAGATGAAGCTCAAGGCGTCCGACATCTATTCCGACGATTCGGGCAGCTCGGAGAGCGTCCAGTGTGTCAGTGGGCTTGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCATTCCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCGAGCGTTCATCTTTACTGCTGAAATTAAAGAATCACAGCTCTTGCACGCACACACGCATACACGCACACACCTTAGCAAACACATACAGTCACAGGCAGCACAGCAACAACAAAGATGGTGAAACGCAAACCACAGGCTATGATCGATTCGGAAAGCAGCAGTGATTCGGATTCCCGGTTCCGATCTCGATT] [+] EMBL BM621855 [CCGCGGCTGGTGACATGTCCGGCCCCGTGCCGATGGATACGTCCGAAGAGGGCAGTGGGATGGGAGCGGACAGTCCTTCCTCGTCCCCGGAAAAGAAAGGCGATGACGTTTCGAGTGCTTCGGAGTACTTCGATCCAAAGGAACGGTCAAAGGAGCGCAAAAGACGGTCGAGATGAACCGCACGGACGACAAGCGCAGCAACGCGATGGCAATGCTGAAGGCGAAGCGCGAGGGCAAGGCGAAACGGGAGGAGGAGGAAGCGAAGCGCGAGGCACAGCGAAAGCAGGACGCCAGCCAGCAGGAGGACAAGGAGGAGCTGGCCGACGTGCCCGGCGGCAAGTCGCAGATGAAGCTCAAGGCGTCCGACATCTATTCCGACGATTCGGGCAGCTCGGAGAGCGTCCAGTGTGTCAGTGGGCTTGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCATTCCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCGAGCGTTCATCTTTACTGCTGAAATTAAAGAATCACAGCTCTTGCACGCACACACGCATACACGCACACACCTTAGCAAACACATACAGTCACAGGCAGCACAGCAACAACAAAGATGGTGAAACGCAAACCACAGGCTATGATCGATTCGGAAAGCAGCAGTGATTCGGATTCCCGGTTCCGATCTCGATT] consensusID : consensus_3980#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [GGCCGGGCTGGGGCTTGGCAAGAGCGAATCGCGTAACCATCACAGCAACGCCAGCAATTTTAGCCGGAAAGTGATCAACCCGCAACGGACAGAAAGCTTCCGTGCTGGGGGCAGGTAAATTGTTGACCGTCGGACCGTCTAGAACACCGGATAAAAGCGGTCCCAGCTGCCGCATTCCCCCCGTAACCATCACCGCCGTCGGAGAGCGTCCAGTGTGTCAGTGGGCTTGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCATTCCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCGAGCGTTCATCTTTACTGCTGAAATTCAAGAATCACAGCTCTTGCACGC] [+] EMBL BX602708 [GGCCGGGCTGGGGCTTGGCAAGAGCGAATCGCGTAACCATCACAGCAACGCCAGCAATTTTAGCCGGAAAGTGATCAACCCGCAACGGACAGAAAGCTTCCGTGCTGGGGGCAGGTAAATTGTTGACCGTCGGACCGTCTAGAACACCGGATAAAAGCGGTCCCAGCTGCCGCATTCCCCCCGTAACCATCACCGCCGTCGGAGAGCGTCCAGTGTGTCAGTGGGCTTGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCATTCCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCGAGCGTTCATCTTTACTGCTGAAATTCAAGAATCACAGCTCTTGCACGC] consensusID : consensus_3980#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [AGCAGATTCGCCCGANGGANANCGTTCGTTGAAGGTCACACGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCCGAGCGTTCATCTTTACTGGCTGAAATTAAAGAATCACAGCTCTTGCACGCACACACGCATACACGCACACACCTTAGCAAACACATACAGCTCACAGGCAGCACAGCAAACAACAAAGATGGTGAAAACGCAAAACCACAGGCTATGATCCGATTCGGAAAGCAGCAGTGATTTCGGGATTCCGGGTTTCCGATCTCGGATTCGGGAACTGCTTTTCATTTGGCCAAGAAAGGAAGAAGACCAAACCCGTTTGGGCGTCCGGCTCG] [+] EMBL AL697155 [AGCAGATTCGCCCGANGGANANCGTTCGTTGAAGGTCACACGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTTTTCCCGAGCGTTCATCTTTACTGGCTGAAATTAAAGAATCACAGCTCTTGCACGCACACACGCATACACGCACACACCTTAGCAAACACATACAGCTCACAGGCAGCACAGCAAACAACAAAGATGGTGAAAACGCAAAACCACAGGCTATGATCCGATTCGGAAAGCAGCAGTGATTTCGGGATTCCGGGTTTCCGATCTCGGATTCGGGAACTGCTTTTCATTTGGCCAAGAAAGGAAGAAGACCAAACCCGTTTGGGCGTCCGGCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3980#0 CCGCGGCTGGTGACATGTCCGGCCCCGTGCCGATGGATACGTCCGAAGAGGGCAGTGGGA 60 consensus_3980#2 ------------------------------------------------------------ consensus_3980#1 ------------------------------------------------------------ consensus_3980#0 TGGGAGCGGACAGTCCTTCCTCGTCCCCGGAAAAGAAAGGCGATGACGTTTCGAGTGCTT 120 consensus_3980#2 ------------------------------------------------------------ consensus_3980#1 ------------------------------------------------------------ consensus_3980#0 CGGAGTACTTCGATCCAAAGGAACGGTCAAAGGAGCGCAAAAGACGGTCGAGATGAACCG 180 consensus_3980#2 ------------------------------------------------------------ consensus_3980#1 ------------------------------------------------------------ consensus_3980#0 CACGGACGACAAGCGCAGCAACGCGATGGCAATGCTGAAGGCGAAGCGCGAGGGCAAGGC 240 consensus_3980#2 ------------------------------------------------------------ consensus_3980#1 --------------GGCCGGGCTGGGGCTTGGCAAGAGCGAATCGCGTAACCATCACAGC 46 consensus_3980#0 GAAACGGGAGGAGGAGGAAGCGAAGCGCGAGGCACAGCGAAAGCAGGACGCCAGCCAGCA 300 consensus_3980#2 ------------------------------------------------------------ consensus_3980#1 AACGCCAGCAATTTTAGCCGGAAAGTGATCAACCCGCAACGGACAGAAAGCTTCCGTGCT 106 consensus_3980#0 GGAGGACAAGGAGGAGCTGGCCGACGTGCCCGGCGGCAAGTCGCAGATGAA-GCTCAAGG 359 consensus_3980#2 ------------------------------------------------------------ consensus_3980#1 GGGGGCAGGTAAATTGTTGACCGTCGGACCGTCTAGAACACCGGATAAAAGCGGTCCCAG 166 consensus_3980#0 CGTCCGACATCTATTCCGACGATTCGGGCAGCTCGGAGAGCGTCCAGTGTGTCAGTGGGC 419 consensus_3980#2 ------------------------------------------------------------ consensus_3980#1 CTGCCGCATTCCCCCCGTAACCATCACCGCCGTCGGAGAGCGTCCAGTGTGTCAGTGGGC 226 consensus_3980#0 TTGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCAT 479 consensus_3980#2 -------------------------------------AGCAGATTCGCCCG---ANGGAN 20 consensus_3980#1 TTGCAAGGGAAGTAGCGTGTTACCCAGCGTAAAGGCGAGCGCGCGCGCTTGTGTGTGCAT 286 *** *** * * * consensus_3980#0 TCCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTT 539 consensus_3980#2 ANCGTTCGTTGAA-GGTCACAC-GAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTT 78 consensus_3980#1 TCCGTTCGTTGAAAGGTCACACCGAATTGCGAATCAGAGAAAAAGCGGACCGCAGCAGTT 346 *********** ******** ************************************* consensus_3980#0 TTCC-GAGCGTTCATCTTTACTG-CTGAAATTAAAGAATCACAGCTCTTGCACGCACACA 597 consensus_3980#2 TTCCCGAGCGTTCATCTTTACTGGCTGAAATTAAAGAATCACAGCTCTTGCACGCACACA 138 consensus_3980#1 TTCC-GAGCGTTCATCTTTACTG-CTGAAATTCAAGAATCACAGCTCTTGCACGC----- 399 **** ****************** ******** ********************** consensus_3980#0 CGCATACACGCACACACCTTAGCAAACACATACAG-TCACAGGCAGCACAGCAA-CAACA 655 consensus_3980#2 CGCATACACGCACACACCTTAGCAAACACATACAGCTCACAGGCAGCACAGCAAACAACA 198 consensus_3980#1 ------------------------------------------------------------ consensus_3980#0 AAGATGGTGAAA-CGCAAA-CCACAGGCTATGATC-GATTCGGAAAGCAGCAGTGATTC- 711 consensus_3980#2 AAGATGGTGAAAACGCAAAACCACAGGCTATGATCCGATTCGGAAAGCAGCAGTGATTTC 258 consensus_3980#1 ------------------------------------------------------------ consensus_3980#0 -GGATTCCCGGTT-CCGATCTCGATT---------------------------------- 735 consensus_3980#2 GGGATTCCGGGTTTCCGATCTCGGATTCGGGAACTGCTTTTCATTTGGCCAAGAAAGGAA 318 consensus_3980#1 ------------------------------------------------------------ consensus_3980#0 ------------------------------- consensus_3980#2 GAAGACCAAACCCGTTTGGGCGTCCGGCTCG 349 consensus_3980#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||