These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence [CCGCGCAAATCGGTTGTGCTCGGTGTAATATTTCTCTCAGCTGTCAGTGTCATTGCGGTCGATCGAACACCCTTAAGGTACGTTCCCTTCCGGTGTCGAGGTGGCATTTCCGTGTCGATAACGTTCCGTTGCGATGGGTTCGCTCACTGCCCGGATGGTTCAGATGAGGAAGGTTGTCGGAGCGTATCGCTCGTTGAAGGACCGCCTGAAAGCGTCACCGTGCAAGAGGGCGAGTGGATGAATCTAACGTGTCGGGGAACTGGCGTACCGTCCCCAAGTGTACGATGGAAAATGAATGGAAAAGAGCTACTGGATCCGGTTTGTGATTGGGTCTCGGAGGATGGCGTTGGACATCTTGCTTGTAAGATGCGTCTGATAGATTCTGGGAATTATTCCTGTCATTTGGTAAATCCGCTCGGCACAATCGATGTACAACCGGTGACGATGGCCACGGTGCAAGGGAATCCATGTCCGAAAGGAGAGTTCTTAGCCGGAGAAGGAAGTGCCAAGTCTTGTATGAAGTGTTTCTGTTCTGGCGTCAGTGATCTGTGCCACAAAGCAGATATGTACCGGTGGAATAACACACTGGCGTTGAACGACTGGAAAATGAGATACGCAACGTGGGGATGGCAAAGGTACTGTGAAGATAGAGCACAACATCCAGAATTTCTCTTCAAC] [+] EMBL BM598004 [CCGCGCAAATCGGTTGTGCTCGGTGTAATATTTCTCTCAGCTGTCAGTGTCATTGCGGTCGATCGAACACCCTTAAGGTACGTTCCCTTCCGGTGTCGAGGTGGCATTTCCGTGTCGATAACGTTCCGTTGCGATGGGTTCGCTCACTGCCCGGATGGTTCAGATGAGGAAGGTTGTCGGAGCGTATCGCTCGTTGAAGGACCGCCTGAAAGCGTCACCGTGCAAGAGGGCGAGTGGATGAATCTAACGTGTCGGGGAACTGGCGTACCGTCCCCAAGTGTACGATGGAAAATGAATGGAAAAGAGCTACTGGATCCGGTTTGTGATTGGGTCTCGGAGGATGGCGTTGGACATCTTGCTTGTAAGATGCGTCTGATAGATTCTGGGAATTATTCCTGTCATTTGGTAAATCCGCTCGGCACAATCGATGTACAACCGGTGACGATGGCCACGGTGCAAGGGAATCCATGTCCGAAAGGAGAGTTCTTAGCCGGAGAAGGAAGTGCCAAGTCTTGTATGAAGTGTTTCTGTTCTGGCGTCAGTGATCTGTGCCACAAAGCAGATATGTACCGGTGGAATAACACACTGGCGTTGAACGACTGGAAAATGAGATACGCAACGTGGGGATGGCAAAGGTACTGTGAAGATAGAGCACAACATCCAGAATTTCTCTTCAAC] [+] EMBL BX603126 [ aCGCAAATCGGTTGTGCTCGGTGTAATATTTCTCTCAGCTGTCAGTGTCATTGCGGTCGATCGAACACCCTTAAGGTACGTTCCCTTCCGGTGTCGAGGTGGCATTTCCGTGTCGATAACGTTCCGTTGCGATGGGTTCGCTCACTGCCCGGATGGTTCAGATGAGGAAGGTTGTCGGAGCGTATCGCTCGTTGAAGGACCGCCTGAAAGCGTCACCGTGCAAGAGGGCGAGTGGATGAATCTAACGTGTCGGGGAACTGGCGTACCGTCCCCAAGTGTACGATGGAAAATGAATGGAAAAGAGCTACTGGATCCGGTTTGTGATTGGGTCTCGGAGGATGGCGTTGGACATCTTGCTTGTAAGATGCGTCTGATAGATTCTGGGAATTATTCCTGTCATTTGGTAAATCCGCT ] consensusID : consensus_3983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [CAGATCGCCNGAGGTTCNNTCGGTGTCGAGGTGGCATTTCGTGTCGATAACTGTTCCGTTGCGATGGGTTCGCTCACTGCCCGGATGGTTCAGATGAGGAAGGTTGTCGGAGCGTATCGCTCGTTGAAGGACCGCCTGAAAGCGTCACCGTGCAAGAGGGCGAGTGGATGAATCTAACGTGTCGGGGAACTGGCGTACCGTCCCCAAGTGTACGATGGAAAATGAATGGAAAAGAGCTACTGGATCCGGTTTGTGATTGGGTCTCGGAGGATGGCGTTGGACATCTTGCTTGTAAGATGCGTCTGATAGATTCTGGGAATTATTCCTGTCATTTGGTAAATCCGCTCGGACAATCGATGTACAACGGTGACGATGGCCACGGTGCAAGGGAATCCATGTCCGAAAGGAGAGTTCTTAGCCGGAGAAGGAAGTGCCAAGTCTTGTATGAAGTGTCTCTGTTCTGGCGTCAGTGATCTGTGCCACAAAGCAGATATGTACCGGTGGAATAACACACTGGCGTTGAACGACTGGAAAATGAGATACGCAACGTGGGATG] [+] EMBL AL697166 [CAGATCGCCNGAGGTTCNNTCGGTGTCGAGGTGGCATTTCGTGTCGATAACTGTTCCGTTGCGATGGGTTCGCTCACTGCCCGGATGGTTCAGATGAGGAAGGTTGTCGGAGCGTATCGCTCGTTGAAGGACCGCCTGAAAGCGTCACCGTGCAAGAGGGCGAGTGGATGAATCTAACGTGTCGGGGAACTGGCGTACCGTCCCCAAGTGTACGATGGAAAATGAATGGAAAAGAGCTACTGGATCCGGTTTGTGATTGGGTCTCGGAGGATGGCGTTGGACATCTTGCTTGTAAGATGCGTCTGATAGATTCTGGGAATTATTCCTGTCATTTGGTAAATCCGCTCGGACAATCGATGTACAACGGTGACGATGGCCACGGTGCAAGGGAATCCATGTCCGAAAGGAGAGTTCTTAGCCGGAGAAGGAAGTGCCAAGTCTTGTATGAAGTGTCTCTGTTCTGGCGTCAGTGATCTGTGCCACAAAGCAGATATGTACCGGTGGAATAACACACTGGCGTTGAACGACTGGAAAATGAGATACGCAACGTGGGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3983#0 CCGCGCAAATCGGTTGTGCTCGGTGTAATATTTCTCTCAGCTGTCAGTGTCATTGCGGTC 60 consensus_3983#1 ------------------------------------------------------------ consensus_3983#0 GATCGAACACCCTTAAGGTACGTTCCCTTCCGGTGTCGAGGTGGCATTTCCGTGTCGATA 120 consensus_3983#1 ---CAGAT-CGCCNGAGGTTCNNTC------GGTGTCGAGGTGGCATTTC-GTGTCGATA 49 * * * * **** * ** ******************* ********* consensus_3983#0 AC-GTTCCGTTGCGATGGGTTCGCTCACTGCCCGGATGGTTCAGATGAGGAAGGTTGTCG 179 consensus_3983#1 ACTGTTCCGTTGCGATGGGTTCGCTCACTGCCCGGATGGTTCAGATGAGGAAGGTTGTCG 109 ** ********************************************************* consensus_3983#0 GAGCGTATCGCTCGTTGAAGGACCGCCTGAAAGCGTCACCGTGCAAGAGGGCGAGTGGAT 239 consensus_3983#1 GAGCGTATCGCTCGTTGAAGGACCGCCTGAAAGCGTCACCGTGCAAGAGGGCGAGTGGAT 169 ************************************************************ consensus_3983#0 GAATCTAACGTGTCGGGGAACTGGCGTACCGTCCCCAAGTGTACGATGGAAAATGAATGG 299 consensus_3983#1 GAATCTAACGTGTCGGGGAACTGGCGTACCGTCCCCAAGTGTACGATGGAAAATGAATGG 229 ************************************************************ consensus_3983#0 AAAAGAGCTACTGGATCCGGTTTGTGATTGGGTCTCGGAGGATGGCGTTGGACATCTTGC 359 consensus_3983#1 AAAAGAGCTACTGGATCCGGTTTGTGATTGGGTCTCGGAGGATGGCGTTGGACATCTTGC 289 ************************************************************ consensus_3983#0 TTGTAAGATGCGTCTGATAGATTCTGGGAATTATTCCTGTCATTTGGTAAATCCGCTCGG 419 consensus_3983#1 TTGTAAGATGCGTCTGATAGATTCTGGGAATTATTCCTGTCATTTGGTAAATCCGCTCGG 349 ************************************************************ consensus_3983#0 CACAATCGATGTACAACCGGTGACGATGGCCACGGTGCAAGGGAATCCATGTCCGAAAGG 479 consensus_3983#1 -ACAATCGATGTACAAC-GGTGACGATGGCCACGGTGCAAGGGAATCCATGTCCGAAAGG 407 **************** ****************************************** consensus_3983#0 AGAGTTCTTAGCCGGAGAAGGAAGTGCCAAGTCTTGTATGAAGTGTTTCTGTTCTGGCGT 539 consensus_3983#1 AGAGTTCTTAGCCGGAGAAGGAAGTGCCAAGTCTTGTATGAAGTGTCTCTGTTCTGGCGT 467 ********************************************** ************* consensus_3983#0 CAGTGATCTGTGCCACAAAGCAGATATGTACCGGTGGAATAACACACTGGCGTTGAACGA 599 consensus_3983#1 CAGTGATCTGTGCCACAAAGCAGATATGTACCGGTGGAATAACACACTGGCGTTGAACGA 527 ************************************************************ consensus_3983#0 CTGGAAAATGAGATACGCAACGTGGGGATGGCAAAGGTACTGTGAAGATAGAGCACAACA 659 consensus_3983#1 CTGGAAAATGAGATACGCAACGTGGG-ATG------------------------------ 556 ************************** *** consensus_3983#0 TCCAGAATTTCTCTTCAAC 678 consensus_3983#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||