These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 902 fasta sequence [CCGGTCGGTTGTTTTATGTAATTTTTGTTGTAAATATTTGTAGTCCCAGTGCGCCCAGTGTGGTGTAGTTTTGTTTATTGTTTAGTGCTGTTTCGTGTTATTTGTGTTTGTGTGTGTGTGTATGTGACTACCTGTAAGAATGTGTACCACTGCTCGCGAGCCAATATGCTGCAACGACCAAAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACGACAGCCCGAGCCATACGTCCGATACGGCGTATGAATCATGCCTGAGTCCCCTGCAGCCGAACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGGGCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAAGGAAAAACCATACCTACTCCTGCAGATTCTCACGCAACTGCGTGGTGGACAAAGACAAGCGCAACCAGTGCCGGTACTGTAGGCTGAAGAAATGCTTCAAAGCGGGCATGAAAAAAGGAGGCGGTCCAGAACGAGCGGGACCGCATCAGCTGCCGCAAGCCGAGCACGGACGATAAGAACACCATCAACGGGCTGTCGGTGAAGTTTCTGCTGCGGGCGGAAAACTTTAGCCGCCACTTCGGCGCGGCGCTGGACGAAACGAACGACGCGGAGGAGGCCGACCTGTCGTCGAAGCGGTTCGCCAGCATCAACGACGTGTGCGACTCGATGAAGCAGCAGCTGCTGATACTGGTCGAGTGGGCCAAATCGATACCGGCCTTCGCCGAGCTGCAGCTGGACGATCAGGTCGCGCTGCTGCGGGCGCACGCGGGCGAACATCTGCTGCTCGGGCTGTCCCGCCGGTCGATGCACCTGCAGGACAT] [+] EMBL BM598135 [CCGGTCGGTTGTTTTATGTAATTTTTGTTGTAAATATTTGTAGTCCCAGTGCGCCCAGTGTGGTGTAGTTTTGTTTATTGTTTAGTGCTGTTTCGTGTTATTTGTGTTTGTGTGTGTGTGTATGTGACTACCTGTAAGAATGTGTACCACTGCTCGCGAGCCAATATGCTGCAACGACCAAAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACGACAGCCCGAGCCATACGTCCGATACGGCGTATGAATCATGCCTGAGTCCCCTGCAGCCGAACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGGGCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAAGGAAAAACCATACCTACTCCTGCAGATTCTCACGCAACTGCGTGGTGGACAAAGACAAGCGCAACCAGTGCCGGTACTGTAGGCTGAAGAAATGCTTCAAAGCGGGCATGAAAAAAGGAGGCGGTCCAGAACGAGCGGGACCGCATCAGCTGCCGCAAGCCGAGCACGGACGATAAGAACACCATCAA ] [+] EMBL BM618330 [ GACCCACGCGTCCG GGCGTATGAATCATGCCTGAGTCCCCTGCAGCCGAACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGGGCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAAGGAAAAACCATACCTACTCCTGCAGATTCTCACGCAACTGCGTGGTGGACAAAGACAAGCGCAACCAGTGTCGGTACTGTAGGCTGAAGAAATGCTTCAAAGCGGGCATG AAAAAGGAGGCGGTCCAGAACGAGCGGGACCGCATCAGCTGCCGCAAGCCGAGCACGGACGATAAGAACACCATCAACGGGCTGTCGGTGAAGTTTCTGCTGCGGGCGGAAAACTTTAGCCGCCACTTCGGCGCGGCGCTGGACGAAACGAACGACGCGGAGGAGGCCGACCTGTCGTCGAAGCGGTTCGCCAGCATCAACGACGTGTGCGACTCGATGAAGCAGCAGCTGCTGATACTGGTCGAGTGGGCCAAATCGATACCGGCCTTCGCCGAGCTGCAGCTGGACGATCAGGTCGCGCTGCTGCGGGCGCACGCGGGCGAACATCTGCTGCTCGGGCTGTCCCGCCGGTCGATGCACCTGCAGGACAT] consensusID : consensus_3988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [CCGCCCACGCGTTCGGCACATAACTGTAGTGATGTCGGGTGTTTTATAGTGTGTACCACTGCTCGCGAGCCAATATGCTGCGACGACCAAAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACGACAGCCCGAGCCATACGTCCGATACGGGGTATGAATCATGCCTGAGTCCCCTGCAGCCGAACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGGGCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAAGGAAAAACCATACCTACTCCTGCAGATTC] [+] EMBL BM656222 [CCGCCCACGCGTTCGGCACATAACTGTAGTGATGTCGGGTGTTTTATAGTGTGTACCACTGCTCGCGAGCCAATATGCTGCGACGACCAAAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACGACAGCCCGAGCCATACGTCCGATACGGGGTATGAATCATGCCTGAGTCCCCTGCAGCCGAACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGGGCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAAGGAAAAACCATACCTACTCCTGCAGATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3988#0 CCGGTCGGTTGTTTTATGTAATTTTTGTTGTAAATATTTGTAGTCCCAGTGCGCCCAGTG 60 consensus_3988#1 ------------------------------------------------------------ consensus_3988#0 TGGTGTAGTTTTGTTTATTGTTTAGTGCTGTTTCGTGTTATTTGTGTTTGTGTGTGTGTG 120 consensus_3988#1 ---------------------------CCGCC-CACGCGTTCGGCACATAACTGTAGTGA 32 * * * * * * * *** consensus_3988#0 TATGTGACTACCTGTAAGAATGTGTACCACTGCTCGCGAGCCAATATGCTGCAACGACCA 180 consensus_3988#1 TGTCGGGTGTTTTATAG---TGTGTACCACTGCTCGCGAGCCAATATGCTGCGACGACCA 89 * * * * ** ******************************** ******* consensus_3988#0 AAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACG 240 consensus_3988#1 AAATGTCTAACGCCGGAATAGAGTACAGCGAGCTGAACGACCGAACGAAAGGAAGCCACG 149 ************************************************************ consensus_3988#0 ACAGCCCGAGCCATACGTCCGATACGGCGTATGAATCATGCCTGAGTCCCCTGCAGCCGA 300 consensus_3988#1 ACAGCCCGAGCCATACGTCCGATACGGGGTATGAATCATGCCTGAGTCCCCTGCAGCCGA 209 *************************** ******************************** consensus_3988#0 ACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGG 360 consensus_3988#1 ACGATAGCGGCAGCTTCAGCGCAATCAACGTGTGCGCTATCTGCTGCGATCGTGCGACGG 269 ************************************************************ consensus_3988#0 GCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAA 420 consensus_3988#1 GCAAACACTACGGTGCCGCCTCGTGCGATGGATGTAAGGGCTTTTTCCGCCGGAGCGTAA 329 ************************************************************ consensus_3988#0 GGAAAAACCATACCTACTCCTGCAGATTCTCACGCAACTGCGTGGTGGACAAAGACAAGC 480 consensus_3988#1 GGAAAAACCATACCTACTCCTGCAGATTC------------------------------- 358 ***************************** consensus_3988#0 GCAACCAGTGCCGGTACTGTAGGCTGAAGAAATGCTTCAAAGCGGGCATGAAAAAAGGAG 540 consensus_3988#1 ------------------------------------------------------------ consensus_3988#0 GCGGTCCAGAACGAGCGGGACCGCATCAGCTGCCGCAAGCCGAGCACGGACGATAAGAAC 600 consensus_3988#1 ------------------------------------------------------------ consensus_3988#0 ACCATCAACGGGCTGTCGGTGAAGTTTCTGCTGCGGGCGGAAAACTTTAGCCGCCACTTC 660 consensus_3988#1 ------------------------------------------------------------ consensus_3988#0 GGCGCGGCGCTGGACGAAACGAACGACGCGGAGGAGGCCGACCTGTCGTCGAAGCGGTTC 720 consensus_3988#1 ------------------------------------------------------------ consensus_3988#0 GCCAGCATCAACGACGTGTGCGACTCGATGAAGCAGCAGCTGCTGATACTGGTCGAGTGG 780 consensus_3988#1 ------------------------------------------------------------ consensus_3988#0 GCCAAATCGATACCGGCCTTCGCCGAGCTGCAGCTGGACGATCAGGTCGCGCTGCTGCGG 840 consensus_3988#1 ------------------------------------------------------------ consensus_3988#0 GCGCACGCGGGCGAACATCTGCTGCTCGGGCTGTCCCGCCGGTCGATGCACCTGCAGGAC 900 consensus_3988#1 ------------------------------------------------------------ consensus_3988#0 AT 902 consensus_3988#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||