These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3990#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1287 fasta sequence [CCGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTGCCCGTGTTTCCGATGTGCTTCGACGCAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACGGCAACCATCTGCACGATCTGCAGATCGACTTCAAGGACGACCACAACGACGCGTGGCACTTTGTCGTGCCGGACCGGTCGAGCTGGGCGACGCAGAGCATAACGCTGCGCGGCGGCGACTTCAACCTGGACGGCTATCCGGACCTGCTCGCCACGCTGACGAAATCGGGCGACCAGATGCAAACCTTCCTGCTGGAGAACGTGCCGTGCGAGAAGAGCGCCTGCAACCACATGACGCGCACGTTCGTGGTGCGCTGGAAGGCGCTGGCCCCGTTCTCGAACGGTACGATGATGGGTTCGTTTTTCGACTTCTACAACGACGGCATACTGGACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCGTTCCGCAACTCGCTCGACTACGATGCCAACTTCGTGAAGGTGATCGTGCTGACCGGGCTGAGCAATAGCAGTGGACCGAAGATTTTAACGCCACTCGGGCGCAAGAAGCGCACGTTCGGGACGAACCTGCCCGGGCCACGGATTGAGTACAACACGACGACGCAGGACGGGGAACCGCAGCACGGTGCGTCGGCCCAGCTGCCCCAGTCCGCCTACCTGTCGCTGCATCTGCCGTTCACGACGTTCGGGCTGGGCCGGACGCCCAACTTTGTCGACTCGCTGACGGTGGGGCTGTGGAACCATTCGCGCACCTGGACGCAGCTCATACCGAACTCGCAGATGATCGTGGTGCCGAACCCGATCGACGAGCCGGAGCGCTGGAAGGCGCAGCTGTTCGTGACGCCGAGCAAGCTGATCGTGATGAGCGTGATCGCGCTCGGCGTGATCTGTCTCGTGATACTGCTGCTGATACTCATCCTGTACGCGAAGGAAAAGCGCGAAGATCGGATACAGCGCTCGCTCGAGGCGCACCGGTTCCATTTCGATGCGATGTAGAGGATAGCGGAAGGCAAGGGGTTTGGGTTTGGGAGGCCAGTGGGTCAGTTTGCGAGCTGAAACGAGGCGGGACACATGGCAGACCATTTGTTTTAATGCTGCGATACATACATACATAACGTAGACTGTAATCTA] [+] EMBL BM575928 [CCGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTGCCCGTGTTTCCGATGTGCTTCGACGCAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACGGCAACCATCTGCACGATCTGCAGATCGACTTCAAGGACGACCACAACGACGCGTGGCACTTTGTCGTGCCGGACCGGTCGAGCTGGGCGACGCAGAGCATAACGCTGCGCGGCGGCGACTTCAACCTGGACGGCTATCCGGACCTGCTCGCCACGCTGACGAAATCGGGCGACCAGATGCAAACCTTCCTGCTGGAGAACGTGCCGTGCGAGAAGAGCGCCTGCAACCACATGACGCGCACGTTCGTGGTGCGCTGGAAGGCGCTGGCCCCGTTCTCGAACGGTACGATGATGGGTTCGTTTTTCGACTTCTACAACGACGGCATACTGGACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCGTTCCGCAACTCGCTCGACTAC ] [+] EMBL BX617062 [ ACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCGTTCCGCAACTCGCTCGACTACGATGCCAACTTCGTGAAGGTGATCGTGCTGACCGGGCTGAGCAATAGCAGTGGACCGAAGATTTTAACGCCACTCGGGCGCAAGAAGCGCACGTTCGGGACGAACCTGCCCGGGCCACGGATTGAGTACAACACGACGACGCAGGACGGGGAACCGCAGCACGGTGCGTCGGCCCAGCTGCCCCAGTCCGCCTACCTGTCGCTGCATCTGCCGTTCACGACGTTCGGGCTGGGCCGGACGCCCAACTTTGTCGACTCGCTGACGGTGGGGCTGTGGAACCATTCGCGCACCTGGACGCAGCTCATACCGAACTCGCAGATGATCGTGGTGCCGAACCCGATCGACGAGCCGGAGCGCTGGAAGGCGCAGCTGTTCGTGACGCCGAGCAAGCTGATCGTGATGAGCGTGATCGCGCTCGGCGTGATCTGTCTCGTGATACTGCTGCTGATACTCATCCTGTACGCGAAGGAAAAGCGCGAAGATCGGATACAGCGCTCGCTCGAGGCGCACCGGTTCCATTTCGATGCGATGTAGAGGATAGCGGAAGGCAAGGGGTTTGGGTTTGGGAGGCCAGTGGGTCAGTTTGCGAGCTGAAACGAGGCGGGACACATGGCAGACCATTTGTTTTAATGCTGCGATACATACATACATAACGTAGACTGTAATCTA] consensusID : consensus_3990#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 866 fasta sequence [CAGCTNTGTTTTGGATCTTCAAAAAGCGGACGACATGTGCAGCGGGGACAATTTACGGTGCCGATGGATGGTACGCACGGGGCGGAACTGTCCGTCCCGCATTCGCACGCGGTGCTCGACCTGAACAAAGACTTTACCGCGGACCTGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTTGCCCGTGTTTCCGATGTGCTTCGACCGCAAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACTGGAACCATTCTTGCACGATCTGCAGATTCGACTTCAAGGACCGACCACAAGAACGCGTGGCCACTTTTGTCGGTGCCGGGACCCGGTCGAGCTTGGGCGACGCCAGAGCCATTAACGGCTTGCGCGGCGNGCGACTTCAAACTTGGACCGGGTATTCCGGACCTGGCGTCGCCCAACGCCTGACGAAAATTCGGGGCGACCAAGAATTGGCAAACCCTTTCCTTGCTGGGCAGCAACGTTGGCCGTGCCGACGAAAGAAGGCGCCTTGGCGAACCACATTGGACTCGCGGCACGTATCGGTGGGTTGCGCTTGGAAAGTGCTGCTTGGGCCCCGTTTACTCCGGAAACCACGGGTAACGAATTGGATTGGGGGTTCCGGGTAATATTATCCGAAACTTCTTACCAACTGACGGGCATTAACTGGGCAACGCCTGAATCCTATTTGGTACAGACGGCGGGGCAAACNGTGGCCAAACGGGGAACTGCCGAGGCCCGGNGAT] [+] EMBL AL697296 [CAGCTNTGTTTTGGATCTTCAAAAAGCGGACGACATGTGCAGCGGGGACAATTTACGGTGCCGATGGATGGTACGCACGGGGCGGAACTGTCCGTCCCGCATTCGCACGCGGTGCTCGACCTGAACAAAGACTTTACCGCGGACCTGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTTGCCCGTGTTTCCGATGTGCTTCGACCGCAAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACTGGAACCATTCTTGCACGATCTGCAGATTCGACTTCAAGGACCGACCACAAGAACGCGTGGCCACTTTTGTCGGTGCCGGGACCCGGTCGAGCTTGGGCGACGCCAGAGCCATTAACGGCTTGCGCGGCGNGCGACTTCAAACTTGGACCGGGTATTCCGGACCTGGCGTCGCCCAACGCCTGACGAAAATTCGGGGCGACCAAGAATTGGCAAACCCTTTCCTTGCTGGGCAGCAACGTTGGCCGTGCCGACGAAAGAAGGCGCCTTGGCGAACCACATTGGACTCGCGGCACGTATCGGTGGGTTGCGCTTGGAAAGTGCTGCTTGGGCCCCGTTTACTCCGGAAACCACGGGTAACGAATTGGATTGGGGGTTCCGGGTAATATTATCCGAAACTTCTTACCAACTGACGGGCATTAACTGGGCAACGCCTGAATCCTATTTGGTACAGACGGCGGGGCAAACNGTGGCCAAACGGGGAACTGCCGAGGCCCGGNGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3990#0 ------------------------------------------------------------ consensus_3990#1 CAGCTNTGTTTTGGATCTTCAAAAAGCGGACGACATGTGCAGCGGGGACAATTTACGGTG 60 consensus_3990#0 ------------------------------------------------------------ consensus_3990#1 CCGATGGATGGTACGCACGGGGCGGAACTGTCCGTCCCGCATTCGCACGCGGTGCTCGAC 120 consensus_3990#0 ------------------------CCGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGG 36 consensus_3990#1 CTGAACAAAGACTTTACCGCGGACCTGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGG 180 * ********************************** consensus_3990#0 CTGGGCGTGAACAGCCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGC 96 consensus_3990#1 CTGGGCGTGAACAGC-ACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGC 239 *************** ******************************************** consensus_3990#0 AACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTG 156 consensus_3990#1 AACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTG 299 ************************************************************ consensus_3990#0 CT-GCCCGTGTTTCCGATGTGCTTCGAC-GCAAA-GTGCGTCAACTCGAGCATCTTCGTG 213 consensus_3990#1 CTTGCCCGTGTTTCCGATGTGCTTCGACCGCAAAAGTGCGTCAACTCGAGCATCTTCGTG 359 ** ************************* ***** ************************* consensus_3990#0 CACCACGGCAACCATC--TGCACGATCTGCAGAT-CGACTTCAAGGAC-GACCACAACGA 269 consensus_3990#1 CACCACTGGAACCATTCTTGCACGATCTGCAGATTCGACTTCAAGGACCGACCACAAGAA 419 ****** * ****** **************** ************* ******** * consensus_3990#0 CGCGTGGCA--CTTTGTCG-TGCCGGA--CCGGTCGAGCT-GGGCGACGC-AGAGCA--T 320 consensus_3990#1 CGCGTGGCCACTTTTGTCGGTGCCGGGACCCGGTCGAGCTTGGGCGACGCCAGAGCCATT 479 ******** ******* ****** *********** ********* ***** * consensus_3990#0 AACG--CTGCGCGGCGG-CGACTTCAA-CCTGGAC--GGCTATCCGGACCTGC--TCGCC 372 consensus_3990#1 AACGGCTTGCGCGGCGNGCGACTTCAAACTTGGACCGGGTATTCCGGACCTGGCGTCGCC 539 **** ********* ********* * ***** ** ********** ***** consensus_3990#0 --ACGC-TGACGAAATC---GGGCGACCAGAT----GCAAACCTT---CCTGCTGGAGAA 419 consensus_3990#1 CAACGCCTGACGAAAATTCGGGGCGACCAAGAATTGGCAAACCCTTTCCTTGCTGGGCAG 599 **** ******** ********* ******* * * ****** * consensus_3990#0 CG-TGCCGTGCGAGAAGAGCGCCTGCAACCACATGACGCGC-ACGTTCGTGGTGCGCTGG 477 consensus_3990#1 CAACGTTGGCCGTGCCGACGAAAGAAGGCGCCTTGGCGAACCACATTGGACTCGCGGCAC 659 * * * ** * ** * * ** ** * ** ** * *** consensus_3990#0 AAGGCGCTGGCCCCGTTCTCGAACGGTACGATGATGGGTTCGTTTTTCGACTTCTACAAC 537 consensus_3990#1 GTATCGGTGGGTT-GCGCTTGGAAAGTGCTGCTTGGGCCCCGTTT----ACTCCGGAAAC 714 ** *** * ** * * ** * ** ***** *** * *** consensus_3990#0 GACGGCATACTGGACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCG 597 consensus_3990#1 CACGG-GTAACGAATTGGATTGGGGGTTCCGGGTAATATTATCCGAAACTTCTTACCAAC 773 **** ** * * *** * ** * * ** * * * consensus_3990#0 TTCCGCA-ACTCGCTCGACTACG----ATGCCAACTTCGTGAAGGTGATCGTGCTGACCG 652 consensus_3990#1 TGACGGGCATTAACTGGGCAACGCCTGAATCCTATTTGGTACAGACGGCGGGGCAAACNG 833 * ** * * ** * * *** * ** * ** ** ** * * ** ** * consensus_3990#0 -GGCTGAGC----AATAGCAGTGGACCGAAGATTTTAACGCCACTCGGGCGCAAGAAGCG 707 consensus_3990#1 TGGCCAAACGGGGAACTGCCGAGGCCCGGNGAT--------------------------- 866 *** * * ** ** * ** *** *** consensus_3990#0 CACGTTCGGGACGAACCTGCCCGGGCCACGGATTGAGTACAACACGACGACGCAGGACGG 767 consensus_3990#1 ------------------------------------------------------------ consensus_3990#0 GGAACCGCAGCACGGTGCGTCGGCCCAGCTGCCCCAGTCCGCCTACCTGTCGCTGCATCT 827 consensus_3990#1 ------------------------------------------------------------ consensus_3990#0 GCCGTTCACGACGTTCGGGCTGGGCCGGACGCCCAACTTTGTCGACTCGCTGACGGTGGG 887 consensus_3990#1 ------------------------------------------------------------ consensus_3990#0 GCTGTGGAACCATTCGCGCACCTGGACGCAGCTCATACCGAACTCGCAGATGATCGTGGT 947 consensus_3990#1 ------------------------------------------------------------ consensus_3990#0 GCCGAACCCGATCGACGAGCCGGAGCGCTGGAAGGCGCAGCTGTTCGTGACGCCGAGCAA 1007 consensus_3990#1 ------------------------------------------------------------ consensus_3990#0 GCTGATCGTGATGAGCGTGATCGCGCTCGGCGTGATCTGTCTCGTGATACTGCTGCTGAT 1067 consensus_3990#1 ------------------------------------------------------------ consensus_3990#0 ACTCATCCTGTACGCGAAGGAAAAGCGCGAAGATCGGATACAGCGCTCGCTCGAGGCGCA 1127 consensus_3990#1 ------------------------------------------------------------ consensus_3990#0 CCGGTTCCATTTCGATGCGATGTAGAGGATAGCGGAAGGCAAGGGGTTTGGGTTTGGGAG 1187 consensus_3990#1 ------------------------------------------------------------ consensus_3990#0 GCCAGTGGGTCAGTTTGCGAGCTGAAACGAGGCGGGACACATGGCAGACCATTTGTTTTA 1247 consensus_3990#1 ------------------------------------------------------------ consensus_3990#0 ATGCTGCGATACATACATACATAACGTAGACTGTAATCTA 1287 consensus_3990#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||