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Anopheles gambiae
cluster # 3991 cluster # 3991       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3991#0 length = 1326 sequences # 1  
consensus_3991#1 length = 782 sequences # 2  

consensusID : consensus_3991#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1326
fasta sequence
                              [CCGGTTTTGTCGCAAAAGGAACCTGGAAAGCTACGACAAGTTCTACAAAGACTACGTGGCTCTTCCTGAAGGAAGGCATCTGTGACCAGCCAGGAGCAGCAGGAACAATGGAAGAGATCTGCCAAGCTGCTGCGTGTTCGAAACGAGCAAGGAACCTGAACCTGGACGGTATCTGCTGCCCTGAGTACTGCCAGCTGGCAGTGCGGAATGTGCCAGAAGTGATATCTACTATCTGGCCTGCGCCTGAATCGTACCCTGGCTGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTGTTCTGTTCACGAAGCGTACGATGAGCTGGTTGCTTGATGCAGCTCGGCCATGTATTTGGGCCAACGAATTTAAGTATCGCGTGGAGCACAGCGAGCATTGCGCCGTTCCGATTGCGTTCTGACCGAACGGGCAACGGATGCGGACGGGCTGACTCGAACGGTTCGGCTACCTTGGAAAACACTGGCAAAAATCCGCACTTGGACGCCTTGCCTTGCCCGGTTGGGCCTTGGACACTGTGACCAAAAACTTAAACCCTGTGCCAAAGTGGTTGTTCCGACAACCGTTGACAAGGAACCGGAACCCGGGTGGCACAAGCATTCCGGAATTAACCGGCCAATTCCCAGGGTTGGTTGGTTGGGGTTGAACCAGCGGGTTGCGGAACAGNGAGGCACTTGCGGCCCTGGCGTTGGACCCCCTGGGGGCACCTATTATCAATTCCAAAAGAGAAGCTGGGCCACAGAAAGGGNCCCGATNGAAGACCCANTTTTTAACTGCCCGGTANGACTGTCAAGGTCAGAACCCCCAGGTTTTTAACCGGCCTAGCCCTAGGGTGATGGGACCGAAGAACACGCCGGNCCTCACGGNTTCTCATGGGGACAGACACGTTTCCAAAAGATTCCCCACTAAAATAAGCGAATTTCCCACCCAAAGTTCCCAAANGTTTTCAACGACGAGAAATACAGAGGCCGATTTAAGCNAAGCCGAGACAAGAAAGAGCCAGTTTTAAAAGAAACCACGGGGNCNAAGAGNCCCAAAGGCTCCCCGGGTCAAACATTCCCCCCCGGGTGGTGGCAACAAAATCACCGGTTTGGGGGGGCCCCCCGGTGGTATGAACAGCCCGTTTGTGGATGATATTGGGCGAGCACACCCTCAATAGAAAAGAGGCACCCAAAGGAGCAGCGCNGATTTGGGGATAATAATCNCCGCTANTCCCGGAGGAAATANACACCNGGCCNCAGGCTAANAGTTTGGGGCGTGATATGTACGGTAAGCACCGGNTAGTACCANCCTG]

[+] EMBL AL697339             [CCGGTTTTGTCGCAAAAGGAACCTGGAAAGCTACGACAAGTTCTACAAAGACTACGTGGCTCTTCCTGAAGGAAGGCATCTGTGACCAGCCAGGAGCAGCAGGAACAATGGAAGAGATCTGCCAAGCTGCTGCGTGTTCGAAACGAGCAAGGAACCTGAACCTGGACGGTATCTGCTGCCCTGAGTACTGCCAGCTGGCAGTGCGGAATGTGCCAGAAGTGATATCTACTATCTGGCCTGCGCCTGAATCGTACCCTGGCTGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTGTTCTGTTCACGAAGCGTACGATGAGCTGGTTGCTTGATGCAGCTCGGCCATGTATTTGGGCCAACGAATTTAAGTATCGCGTGGAGCACAGCGAGCATTGCGCCGTTCCGATTGCGTTCTGACCGAACGGGCAACGGATGCGGACGGGCTGACTCGAACGGTTCGGCTACCTTGGAAAACACTGGCAAAAATCCGCACTTGGACGCCTTGCCTTGCCCGGTTGGGCCTTGGACACTGTGACCAAAAACTTAAACCCTGTGCCAAAGTGGTTGTTCCGACAACCGTTGACAAGGAACCGGAACCCGGGTGGCACAAGCATTCCGGAATTAACCGGCCAATTCCCAGGGTTGGTTGGTTGGGGTTGAACCAGCGGGTTGCGGAACAGNGAGGCACTTGCGGCCCTGGCGTTGGACCCCCTGGGGGCACCTATTATCAATTCCAAAAGAGAAGCTGGGCCACAGAAAGGGNCCCGATNGAAGACCCANTTTTTAACTGCCCGGTANGACTGTCAAGGTCAGAACCCCCAGGTTTTTAACCGGCCTAGCCCTAGGGTGATGGGACCGAAGAACACGCCGGNCCTCACGGNTTCTCATGGGGACAGACACGTTTCCAAAAGATTCCCCACTAAAATAAGCGAATTTCCCACCCAAAGTTCCCAAANGTTTTCAACGACGAGAAATACAGAGGCCGATTTAAGCNAAGCCGAGACAAGAAAGAGCCAGTTTTAAAAGAAACCACGGGGNCNAAGAGNCCCAAAGGCTCCCCGGGTCAAACATTCCCCCCCGGGTGGTGGCAACAAAATCACCGGTTTGGGGGGGCCCCCCGGTGGTATGAACAGCCCGTTTGTGGATGATATTGGGCGAGCACACCCTCAATAGAAAAGAGGCACCCAAAGGAGCAGCGCNGATTTGGGGATAATAATCNCCGCTANTCCCGGAGGAAATANACACCNGGCCNCAGGCTAANAGTTTGGGGCGTGATATGTACGGTAAGCACCGGNTAGTACCANCCTG]


>consensus_3991#0 CCGGTTTTGTCGCAAAAGGAACCTGGAAAGCTACGACAAGTTCTACAAAGACTACGTGGC TCTTCCTGAAGGAAGGCATCTGTGACCAGCCAGGAGCAGCAGGAACAATGGAAGAGATCT GCCAAGCTGCTGCGTGTTCGAAACGAGCAAGGAACCTGAACCTGGACGGTATCTGCTGCC CTGAGTACTGCCAGCTGGCAGTGCGGAATGTGCCAGAAGTGATATCTACTATCTGGCCTG CGCCTGAATCGTACCCTGGCTGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGG CATCGAGGTGCTGTTCTGTTCACGAAGCGTACGATGAGCTGGTTGCTTGATGCAGCTCGG CCATGTATTTGGGCCAACGAATTTAAGTATCGCGTGGAGCACAGCGAGCATTGCGCCGTT CCGATTGCGTTCTGACCGAACGGGCAACGGATGCGGACGGGCTGACTCGAACGGTTCGGC TACCTTGGAAAACACTGGCAAAAATCCGCACTTGGACGCCTTGCCTTGCCCGGTTGGGCC TTGGACACTGTGACCAAAAACTTAAACCCTGTGCCAAAGTGGTTGTTCCGACAACCGTTG ACAAGGAACCGGAACCCGGGTGGCACAAGCATTCCGGAATTAACCGGCCAATTCCCAGGG TTGGTTGGTTGGGGTTGAACCAGCGGGTTGCGGAACAGNGAGGCACTTGCGGCCCTGGCG TTGGACCCCCTGGGGGCACCTATTATCAATTCCAAAAGAGAAGCTGGGCCACAGAAAGGG NCCCGATNGAAGACCCANTTTTTAACTGCCCGGTANGACTGTCAAGGTCAGAACCCCCAG GTTTTTAACCGGCCTAGCCCTAGGGTGATGGGACCGAAGAACACGCCGGNCCTCACGGNT TCTCATGGGGACAGACACGTTTCCAAAAGATTCCCCACTAAAATAAGCGAATTTCCCACC CAAAGTTCCCAAANGTTTTCAACGACGAGAAATACAGAGGCCGATTTAAGCNAAGCCGAG ACAAGAAAGAGCCAGTTTTAAAAGAAACCACGGGGNCNAAGAGNCCCAAAGGCTCCCCGG GTCAAACATTCCCCCCCGGGTGGTGGCAACAAAATCACCGGTTTGGGGGGGCCCCCCGGT GGTATGAACAGCCCGTTTGTGGATGATATTGGGCGAGCACACCCTCAATAGAAAAGAGGC ACCCAAAGGAGCAGCGCNGATTTGGGGATAATAATCNCCGCTANTCCCGGAGGAAATANA CACCNGGCCNCAGGCTAANAGTTTGGGGCGTGATATGTACGGTAAGCACCGGNTAGTACC ANCCTG



consensusID : consensus_3991#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 782
fasta sequence
                              [CTGCAAAACAGTGCGCTCATTCGGAAGCTGCGCACGGCGCTAACGAACCGCACGCTGCGCTTCCTGCACGACCGCTCGCAAAAGGAACCGGAAAGCTACGACAAGTTCTACAAAGACTACGGGCTCTTCCTGAAGGAAGGCATCGTGACCAGCCAGGAGCAGCAGGAAAAGGAAGAGATCGCCAAGCTGCTGCGGTTCGAAACGAGCAAGGAACCGAACCGGACGGTATCGCTGCCCGAGTACTGCCAGCGGCAGGCGGAAGGCCAGAAGGATATCTACTATCTGGCCGCGCCGAATCGTACCCTGGCGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTGTTCTGTTACGAAGCGTACGATGAGCTGGTGCTGATGCAGCTCGGCATGTATTTGGGCAAGAATTTGGTGTCGGTCGAGAAGGAGATGCGCCGTGCAGATGCGTCGACCGATGGGAAGGATGCGGACGGGCTGATCGAAGGTTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGGCTGAAGGACAAACTTACCGGCAAGGTGTCGAACGTGAAGACGACCGGCAAGCTCGATACGCATCCGTGTGTGGTGACGGTGGANGAGATGGCCGCTGCCCGGCACTTTATCAAAACGCAGAGCCACAACATTAGCGAAGAGAACCGTTACGCACTGTTGCAACCGCAGTTTGAAATCNATCCCAAACATCCCATCATTAAGAAGCTACACAAACTAACGAGCAGCAATCCGGAACTGGCCGA]

[+] EMBL BX624072             [CTGCAAAACAGTGCGCTCATTCGGAAGCTGCGCACGGCGCTAACGAACCGCACGCTGCGCTTCCTGCACGACCGCTCGCAAAAGGAACCGGAAAGCTACGACAAGTTCTACAAAGACTACGGGCTCTTCCTGAAGGAAGGCATCGTGACCAGCCAGGAGCAGCAGGAAAAGGAAGAGATCGCCAAGCTGCTGCGGTTCGAAACGAGCAAGGAACCGAACCGGACGGTATCGCTGCCCGAGTACTGCCAGCGGCAGGCGGAAGGCCAGAAGGATATCTACTATCTGGCCGCGCCGAATCGTACCCTGGCGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTGTTCTGTTACGAAGCGTACGATGAGCTGGTGCTGATGCAGCTCGGCATGTATTTGGGCAAGAATTTGGTGTCGGTCGAGAAGGAGATGCGCCGTGCAGATGCGTCGACCGATGGGAAGGATGCGGACGGGCTGATCGAAGGTTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGGCTGAAGGACAAACTTACCGGCAAGGTGTCGAACGTGAAGACGACCGGCAAGCTCGATACGCATCCGTGTGTGGTGACGGTGGANGAGATGGCCGCTGCCCGGCACTTTATCAAAACGCAGAGCCACAACATTAGCGAAGAGAACCGTTACGCACTGTTGCAACCGCAGTTTGAAATCNATCCCAAACATCCCATCATTAAGAAGCTACACAAACTAACGA                      ]
[+] EMBL BX608094             [                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGCGCCGTGCAGATGCGTCGACCGATGGGAAGGATGCGGACGGGCTGATGGAAGGTTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGGCTGAAGGACAAACTTACCGGCAAGGTGTCGAACGTGAAGACGACCGGCAAGCTCGATACGCATCCGTGTGTGGTGACGGTGGAGGAGATGGCCGCTGCCCGGCACTTTATCAAAACGCAGAGCCACAACATTAGCGAAGAGAACCGTTACGCACTGTTGCAGCCGTAGTTTGAAATCAATCCCAAACATCCCATCATTAAGAAGCTACACAAACTAACGAGCAGCAATCCGGAACTGGCCGA]


>consensus_3991#1 CTGCAAAACAGTGCGCTCATTCGGAAGCTGCGCACGGCGCTAACGAACCGCACGCTGCGC TTCCTGCACGACCGCTCGCAAAAGGAACCGGAAAGCTACGACAAGTTCTACAAAGACTAC GGGCTCTTCCTGAAGGAAGGCATCGTGACCAGCCAGGAGCAGCAGGAAAAGGAAGAGATC GCCAAGCTGCTGCGGTTCGAAACGAGCAAGGAACCGAACCGGACGGTATCGCTGCCCGAG TACTGCCAGCGGCAGGCGGAAGGCCAGAAGGATATCTACTATCTGGCCGCGCCGAATCGT ACCCTGGCGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTG TTCTGTTACGAAGCGTACGATGAGCTGGTGCTGATGCAGCTCGGCATGTATTTGGGCAAG AATTTGGTGTCGGTCGAGAAGGAGATGCGCCGTGCAGATGCGTCGACCGATGGGAAGGAT GCGGACGGGCTGATCGAAGGTTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGG CTGAAGGACAAACTTACCGGCAAGGTGTCGAACGTGAAGACGACCGGCAAGCTCGATACG CATCCGTGTGTGGTGACGGTGGANGAGATGGCCGCTGCCCGGCACTTTATCAAAACGCAG AGCCACAACATTAGCGAAGAGAACCGTTACGCACTGTTGCAACCGCAGTTTGAAATCNAT CCCAAACATCCCATCATTAAGAAGCTACACAAACTAACGAGCAGCAATCCGGAACTGGCC GA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3991#0      ------------------------------------------------------------
consensus_3991#1      CTGCAAAACAGTGCGCTCATTCGGAAGCTGCGCACGGCGCTAACGAACCGCACGCTGCGC 60
                                                                                  

consensus_3991#0      ------CCGGTTTTGTCGCAAAAGGAACCTGGAAAGCTACGACAAGTTCTACAAAGACTA 54
consensus_3991#1      TTCCTGCACGACCGCTCGCAAAAGGAACC-GGAAAGCTACGACAAGTTCTACAAAGACTA 119
                            *  *     ************** ******************************

consensus_3991#0      CGTGGCTCTTCCTGAAGGAAGGCATCTGTGACCAGCCAGGAGCAGCAGGAACAATGGAAG 114
consensus_3991#1      CG-GGCTCTTCCTGAAGGAAGGCATC-GTGACCAGCCAGGAGCAGCAGGAAAA--GGAAG 175
                      ** *********************** ************************ *  *****

consensus_3991#0      AGATCTGCCAAGCTGCTGCGTGTTCGAAACGAGCAAGGAACCTGAACCTGGACGGTATCT 174
consensus_3991#1      AGATC-GCCAAGCTGCTGCG-GTTCGAAACGAGCAAGGAACC-GAACC-GGACGGTATC- 230
                      ***** ************** ********************* ***** ********** 

consensus_3991#0      GCTGCCCTGAGTACTGCCAGCTGGCAGTGCGGAATGTGCCAGAAGTGATATCTACTATCT 234
consensus_3991#1      GCTGCCC-GAGTACTGCCAGC-GGCAG-GCGGAAG--GCCAGAAG-GATATCTACTATCT 284
                      ******* ************* ***** ******   ******** **************

consensus_3991#0      GGCCTGCGCCTGAATCGTACCCTGGCTGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAA 294
consensus_3991#1      GGCC-GCGCC-GAATCGTACCCTGGC-GGAAGCTTCCCCGTACTATGAGTCGCTGAAGAA 341
                      **** ***** *************** *********************************

consensus_3991#0      GCGCGGCATCGAGGTGCTGTTCTGTTCACGAAGCGTACGATGAGCTGGTTGCTTGATGCA 354
consensus_3991#1      GCGCGGCATCGAGGTGCTGTTCTGTT-ACGAAGCGTACGATGAGCTGGTG--CTGATGCA 398
                      ************************** **********************    *******

consensus_3991#0      GCTCGGCCATGTATTTGGGCCAACGAATTTAAGTATCGCGTGGAGCACAGCGAGCATTGC 414
consensus_3991#1      GCTCGGC-ATGTATTTGGGC--AAGAATTTG-GTGTCG-GTCGAGAA-----GGAGATGC 448
                      ******* ************  * ******  ** *** ** *** *      *   ***

consensus_3991#0      GCCGTTCCGATTGCGTTCTGACCGAACGGGCAACGGATGCGGACGGGCTGACTCGAACGG 474
consensus_3991#1      GCCGTGCAGAT-GCGTC--GACCGATGGG---AAGGATGCGGACGGGCTGA-TCGAA-GG 500
                      ***** * *** ****   ******  **   * ***************** ***** **

consensus_3991#0      TTCG--GCT-ACCTTGGAAAACACTGGCAAAAATCCGCACTTGGACGCCTTGCCTTGCCC 531
consensus_3991#1      TTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGGCTGAAGGACAAACTTA--CC 558
                      ****  *** *    * *** *  **        ***    ** * * *   * *   **

consensus_3991#0      GGTTGGGCCTTGGACACTGTGACCAAAAACTTAAACCCTGTGCCAAAGTGGTTGTTCCGA 591
consensus_3991#1      GGCAAGGTGTCGAACGTGAAGACGACCGGC--AAGCTCGATACGCATCCGTGTGTGGTGA 616
                      **   **  * * **     *** *    *  ** * *  * *  *   *  ***   **

consensus_3991#0      CAACCGTTGACAAGGAACCGGAACCCGGGTGGCACAAGCATTCCGGAATTAACCGGCCAA 651
consensus_3991#1      CGGTGGANGAGATGG--CCGCTGCCCGG----------CACTTT---ATCAAAACGCAGA 661
                      *    *  ** * **  ***   *****          ** *     ** **   **  *

consensus_3991#0      TTCCCAGGGTTGGTTGGTTGGGGTTGAACCAGCGGGTTGCGGAACAGNGAGGCACTTGCG 711
consensus_3991#1      GCCACAACATTAGC------GAAGAGAACC-----GTTACG---CACTGTTGCAACCGCA 707
                        * **   ** *       *    *****     *** **   **  *  ***   ** 

consensus_3991#0      GCCCTGGCGTTGGACCCCCTGGGGGCACCTATTATCAATTCCAAAAGAGAAGCTGGGCCA 771
consensus_3991#1      GTT-TGAAATCNATCCCAAACATCCCATCATTAAGAAGCTACACAAACTAA--CGAGCAG 764
                      *   **   *    ***        ** *  * *  *  * ** **   **   * **  

consensus_3991#0      CAGAAAGGGNCCCGATNGAAGACCCANTTTTTAACTGCCCGGTANGACTGTCAAGGTCAG 831
consensus_3991#1      CA-ATCCGGAACTGGCCGA----------------------------------------- 782
                      ** *   **  * *   **                                         

consensus_3991#0      AACCCCCAGGTTTTTAACCGGCCTAGCCCTAGGGTGATGGGACCGAAGAACACGCCGGNC 891
consensus_3991#1      ------------------------------------------------------------
                                                                                  

consensus_3991#0      CTCACGGNTTCTCATGGGGACAGACACGTTTCCAAAAGATTCCCCACTAAAATAAGCGAA 951
consensus_3991#1      ------------------------------------------------------------
                                                                                  

consensus_3991#0      TTTCCCACCCAAAGTTCCCAAANGTTTTCAACGACGAGAAATACAGAGGCCGATTTAAGC 1011
consensus_3991#1      ------------------------------------------------------------
                                                                                  

consensus_3991#0      NAAGCCGAGACAAGAAAGAGCCAGTTTTAAAAGAAACCACGGGGNCNAAGAGNCCCAAAG 1071
consensus_3991#1      ------------------------------------------------------------
                                                                                  

consensus_3991#0      GCTCCCCGGGTCAAACATTCCCCCCCGGGTGGTGGCAACAAAATCACCGGTTTGGGGGGG 1131
consensus_3991#1      ------------------------------------------------------------
                                                                                  

consensus_3991#0      CCCCCCGGTGGTATGAACAGCCCGTTTGTGGATGATATTGGGCGAGCACACCCTCAATAG 1191
consensus_3991#1      ------------------------------------------------------------
                                                                                  

consensus_3991#0      AAAAGAGGCACCCAAAGGAGCAGCGCNGATTTGGGGATAATAATCNCCGCTANTCCCGGA 1251
consensus_3991#1      ------------------------------------------------------------
                                                                                  

consensus_3991#0      GGAAATANACACCNGGCCNCAGGCTAANAGTTTGGGGCGTGATATGTACGGTAAGCACCG 1311
consensus_3991#1      ------------------------------------------------------------
                                                                                  

consensus_3991#0      GNTAGTACCANCCTG 1326
consensus_3991#1      ---------------
                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)