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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1326 fasta sequence
[CCGGTTTTGTCGCAAAAGGAACCTGGAAAGCTACGACAAGTTCTACAAAGACTACGTGGCTCTTCCTGAAGGAAGGCATCTGTGACCAGCCAGGAGCAGCAGGAACAATGGAAGAGATCTGCCAAGCTGCTGCGTGTTCGAAACGAGCAAGGAACCTGAACCTGGACGGTATCTGCTGCCCTGAGTACTGCCAGCTGGCAGTGCGGAATGTGCCAGAAGTGATATCTACTATCTGGCCTGCGCCTGAATCGTACCCTGGCTGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTGTTCTGTTCACGAAGCGTACGATGAGCTGGTTGCTTGATGCAGCTCGGCCATGTATTTGGGCCAACGAATTTAAGTATCGCGTGGAGCACAGCGAGCATTGCGCCGTTCCGATTGCGTTCTGACCGAACGGGCAACGGATGCGGACGGGCTGACTCGAACGGTTCGGCTACCTTGGAAAACACTGGCAAAAATCCGCACTTGGACGCCTTGCCTTGCCCGGTTGGGCCTTGGACACTGTGACCAAAAACTTAAACCCTGTGCCAAAGTGGTTGTTCCGACAACCGTTGACAAGGAACCGGAACCCGGGTGGCACAAGCATTCCGGAATTAACCGGCCAATTCCCAGGGTTGGTTGGTTGGGGTTGAACCAGCGGGTTGCGGAACAGNGAGGCACTTGCGGCCCTGGCGTTGGACCCCCTGGGGGCACCTATTATCAATTCCAAAAGAGAAGCTGGGCCACAGAAAGGGNCCCGATNGAAGACCCANTTTTTAACTGCCCGGTANGACTGTCAAGGTCAGAACCCCCAGGTTTTTAACCGGCCTAGCCCTAGGGTGATGGGACCGAAGAACACGCCGGNCCTCACGGNTTCTCATGGGGACAGACACGTTTCCAAAAGATTCCCCACTAAAATAAGCGAATTTCCCACCCAAAGTTCCCAAANGTTTTCAACGACGAGAAATACAGAGGCCGATTTAAGCNAAGCCGAGACAAGAAAGAGCCAGTTTTAAAAGAAACCACGGGGNCNAAGAGNCCCAAAGGCTCCCCGGGTCAAACATTCCCCCCCGGGTGGTGGCAACAAAATCACCGGTTTGGGGGGGCCCCCCGGTGGTATGAACAGCCCGTTTGTGGATGATATTGGGCGAGCACACCCTCAATAGAAAAGAGGCACCCAAAGGAGCAGCGCNGATTTGGGGATAATAATCNCCGCTANTCCCGGAGGAAATANACACCNGGCCNCAGGCTAANAGTTTGGGGCGTGATATGTACGGTAAGCACCGGNTAGTACCANCCTG]
[+] EMBL AL697339 [CCGGTTTTGTCGCAAAAGGAACCTGGAAAGCTACGACAAGTTCTACAAAGACTACGTGGCTCTTCCTGAAGGAAGGCATCTGTGACCAGCCAGGAGCAGCAGGAACAATGGAAGAGATCTGCCAAGCTGCTGCGTGTTCGAAACGAGCAAGGAACCTGAACCTGGACGGTATCTGCTGCCCTGAGTACTGCCAGCTGGCAGTGCGGAATGTGCCAGAAGTGATATCTACTATCTGGCCTGCGCCTGAATCGTACCCTGGCTGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTGTTCTGTTCACGAAGCGTACGATGAGCTGGTTGCTTGATGCAGCTCGGCCATGTATTTGGGCCAACGAATTTAAGTATCGCGTGGAGCACAGCGAGCATTGCGCCGTTCCGATTGCGTTCTGACCGAACGGGCAACGGATGCGGACGGGCTGACTCGAACGGTTCGGCTACCTTGGAAAACACTGGCAAAAATCCGCACTTGGACGCCTTGCCTTGCCCGGTTGGGCCTTGGACACTGTGACCAAAAACTTAAACCCTGTGCCAAAGTGGTTGTTCCGACAACCGTTGACAAGGAACCGGAACCCGGGTGGCACAAGCATTCCGGAATTAACCGGCCAATTCCCAGGGTTGGTTGGTTGGGGTTGAACCAGCGGGTTGCGGAACAGNGAGGCACTTGCGGCCCTGGCGTTGGACCCCCTGGGGGCACCTATTATCAATTCCAAAAGAGAAGCTGGGCCACAGAAAGGGNCCCGATNGAAGACCCANTTTTTAACTGCCCGGTANGACTGTCAAGGTCAGAACCCCCAGGTTTTTAACCGGCCTAGCCCTAGGGTGATGGGACCGAAGAACACGCCGGNCCTCACGGNTTCTCATGGGGACAGACACGTTTCCAAAAGATTCCCCACTAAAATAAGCGAATTTCCCACCCAAAGTTCCCAAANGTTTTCAACGACGAGAAATACAGAGGCCGATTTAAGCNAAGCCGAGACAAGAAAGAGCCAGTTTTAAAAGAAACCACGGGGNCNAAGAGNCCCAAAGGCTCCCCGGGTCAAACATTCCCCCCCGGGTGGTGGCAACAAAATCACCGGTTTGGGGGGGCCCCCCGGTGGTATGAACAGCCCGTTTGTGGATGATATTGGGCGAGCACACCCTCAATAGAAAAGAGGCACCCAAAGGAGCAGCGCNGATTTGGGGATAATAATCNCCGCTANTCCCGGAGGAAATANACACCNGGCCNCAGGCTAANAGTTTGGGGCGTGATATGTACGGTAAGCACCGGNTAGTACCANCCTG]
consensusID : consensus_3991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 782 fasta sequence
[CTGCAAAACAGTGCGCTCATTCGGAAGCTGCGCACGGCGCTAACGAACCGCACGCTGCGCTTCCTGCACGACCGCTCGCAAAAGGAACCGGAAAGCTACGACAAGTTCTACAAAGACTACGGGCTCTTCCTGAAGGAAGGCATCGTGACCAGCCAGGAGCAGCAGGAAAAGGAAGAGATCGCCAAGCTGCTGCGGTTCGAAACGAGCAAGGAACCGAACCGGACGGTATCGCTGCCCGAGTACTGCCAGCGGCAGGCGGAAGGCCAGAAGGATATCTACTATCTGGCCGCGCCGAATCGTACCCTGGCGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTGTTCTGTTACGAAGCGTACGATGAGCTGGTGCTGATGCAGCTCGGCATGTATTTGGGCAAGAATTTGGTGTCGGTCGAGAAGGAGATGCGCCGTGCAGATGCGTCGACCGATGGGAAGGATGCGGACGGGCTGATCGAAGGTTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGGCTGAAGGACAAACTTACCGGCAAGGTGTCGAACGTGAAGACGACCGGCAAGCTCGATACGCATCCGTGTGTGGTGACGGTGGANGAGATGGCCGCTGCCCGGCACTTTATCAAAACGCAGAGCCACAACATTAGCGAAGAGAACCGTTACGCACTGTTGCAACCGCAGTTTGAAATCNATCCCAAACATCCCATCATTAAGAAGCTACACAAACTAACGAGCAGCAATCCGGAACTGGCCGA]
[+] EMBL BX624072 [CTGCAAAACAGTGCGCTCATTCGGAAGCTGCGCACGGCGCTAACGAACCGCACGCTGCGCTTCCTGCACGACCGCTCGCAAAAGGAACCGGAAAGCTACGACAAGTTCTACAAAGACTACGGGCTCTTCCTGAAGGAAGGCATCGTGACCAGCCAGGAGCAGCAGGAAAAGGAAGAGATCGCCAAGCTGCTGCGGTTCGAAACGAGCAAGGAACCGAACCGGACGGTATCGCTGCCCGAGTACTGCCAGCGGCAGGCGGAAGGCCAGAAGGATATCTACTATCTGGCCGCGCCGAATCGTACCCTGGCGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTGTTCTGTTACGAAGCGTACGATGAGCTGGTGCTGATGCAGCTCGGCATGTATTTGGGCAAGAATTTGGTGTCGGTCGAGAAGGAGATGCGCCGTGCAGATGCGTCGACCGATGGGAAGGATGCGGACGGGCTGATCGAAGGTTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGGCTGAAGGACAAACTTACCGGCAAGGTGTCGAACGTGAAGACGACCGGCAAGCTCGATACGCATCCGTGTGTGGTGACGGTGGANGAGATGGCCGCTGCCCGGCACTTTATCAAAACGCAGAGCCACAACATTAGCGAAGAGAACCGTTACGCACTGTTGCAACCGCAGTTTGAAATCNATCCCAAACATCCCATCATTAAGAAGCTACACAAACTAACGA ]
[+] EMBL BX608094 [ TGCGCCGTGCAGATGCGTCGACCGATGGGAAGGATGCGGACGGGCTGATGGAAGGTTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGGCTGAAGGACAAACTTACCGGCAAGGTGTCGAACGTGAAGACGACCGGCAAGCTCGATACGCATCCGTGTGTGGTGACGGTGGAGGAGATGGCCGCTGCCCGGCACTTTATCAAAACGCAGAGCCACAACATTAGCGAAGAGAACCGTTACGCACTGTTGCAGCCGTAGTTTGAAATCAATCCCAAACATCCCATCATTAAGAAGCTACACAAACTAACGAGCAGCAATCCGGAACTGGCCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3991#0 ------------------------------------------------------------
consensus_3991#1 CTGCAAAACAGTGCGCTCATTCGGAAGCTGCGCACGGCGCTAACGAACCGCACGCTGCGC 60
consensus_3991#0 ------CCGGTTTTGTCGCAAAAGGAACCTGGAAAGCTACGACAAGTTCTACAAAGACTA 54
consensus_3991#1 TTCCTGCACGACCGCTCGCAAAAGGAACC-GGAAAGCTACGACAAGTTCTACAAAGACTA 119
* * ************** ******************************
consensus_3991#0 CGTGGCTCTTCCTGAAGGAAGGCATCTGTGACCAGCCAGGAGCAGCAGGAACAATGGAAG 114
consensus_3991#1 CG-GGCTCTTCCTGAAGGAAGGCATC-GTGACCAGCCAGGAGCAGCAGGAAAA--GGAAG 175
** *********************** ************************ * *****
consensus_3991#0 AGATCTGCCAAGCTGCTGCGTGTTCGAAACGAGCAAGGAACCTGAACCTGGACGGTATCT 174
consensus_3991#1 AGATC-GCCAAGCTGCTGCG-GTTCGAAACGAGCAAGGAACC-GAACC-GGACGGTATC- 230
***** ************** ********************* ***** **********
consensus_3991#0 GCTGCCCTGAGTACTGCCAGCTGGCAGTGCGGAATGTGCCAGAAGTGATATCTACTATCT 234
consensus_3991#1 GCTGCCC-GAGTACTGCCAGC-GGCAG-GCGGAAG--GCCAGAAG-GATATCTACTATCT 284
******* ************* ***** ****** ******** **************
consensus_3991#0 GGCCTGCGCCTGAATCGTACCCTGGCTGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAA 294
consensus_3991#1 GGCC-GCGCC-GAATCGTACCCTGGC-GGAAGCTTCCCCGTACTATGAGTCGCTGAAGAA 341
**** ***** *************** *********************************
consensus_3991#0 GCGCGGCATCGAGGTGCTGTTCTGTTCACGAAGCGTACGATGAGCTGGTTGCTTGATGCA 354
consensus_3991#1 GCGCGGCATCGAGGTGCTGTTCTGTT-ACGAAGCGTACGATGAGCTGGTG--CTGATGCA 398
************************** ********************** *******
consensus_3991#0 GCTCGGCCATGTATTTGGGCCAACGAATTTAAGTATCGCGTGGAGCACAGCGAGCATTGC 414
consensus_3991#1 GCTCGGC-ATGTATTTGGGC--AAGAATTTG-GTGTCG-GTCGAGAA-----GGAGATGC 448
******* ************ * ****** ** *** ** *** * * ***
consensus_3991#0 GCCGTTCCGATTGCGTTCTGACCGAACGGGCAACGGATGCGGACGGGCTGACTCGAACGG 474
consensus_3991#1 GCCGTGCAGAT-GCGTC--GACCGATGGG---AAGGATGCGGACGGGCTGA-TCGAA-GG 500
***** * *** **** ****** ** * ***************** ***** **
consensus_3991#0 TTCG--GCT-ACCTTGGAAAACACTGGCAAAAATCCGCACTTGGACGCCTTGCCTTGCCC 531
consensus_3991#1 TTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGGCTGAAGGACAAACTTA--CC 558
**** *** * * *** * ** *** ** * * * * * **
consensus_3991#0 GGTTGGGCCTTGGACACTGTGACCAAAAACTTAAACCCTGTGCCAAAGTGGTTGTTCCGA 591
consensus_3991#1 GGCAAGGTGTCGAACGTGAAGACGACCGGC--AAGCTCGATACGCATCCGTGTGTGGTGA 616
** ** * * ** *** * * ** * * * * * * *** **
consensus_3991#0 CAACCGTTGACAAGGAACCGGAACCCGGGTGGCACAAGCATTCCGGAATTAACCGGCCAA 651
consensus_3991#1 CGGTGGANGAGATGG--CCGCTGCCCGG----------CACTTT---ATCAAAACGCAGA 661
* * ** * ** *** ***** ** * ** ** ** *
consensus_3991#0 TTCCCAGGGTTGGTTGGTTGGGGTTGAACCAGCGGGTTGCGGAACAGNGAGGCACTTGCG 711
consensus_3991#1 GCCACAACATTAGC------GAAGAGAACC-----GTTACG---CACTGTTGCAACCGCA 707
* ** ** * * ***** *** ** ** * *** **
consensus_3991#0 GCCCTGGCGTTGGACCCCCTGGGGGCACCTATTATCAATTCCAAAAGAGAAGCTGGGCCA 771
consensus_3991#1 GTT-TGAAATCNATCCCAAACATCCCATCATTAAGAAGCTACACAAACTAA--CGAGCAG 764
* ** * *** ** * * * * * ** ** ** * **
consensus_3991#0 CAGAAAGGGNCCCGATNGAAGACCCANTTTTTAACTGCCCGGTANGACTGTCAAGGTCAG 831
consensus_3991#1 CA-ATCCGGAACTGGCCGA----------------------------------------- 782
** * ** * * **
consensus_3991#0 AACCCCCAGGTTTTTAACCGGCCTAGCCCTAGGGTGATGGGACCGAAGAACACGCCGGNC 891
consensus_3991#1 ------------------------------------------------------------
consensus_3991#0 CTCACGGNTTCTCATGGGGACAGACACGTTTCCAAAAGATTCCCCACTAAAATAAGCGAA 951
consensus_3991#1 ------------------------------------------------------------
consensus_3991#0 TTTCCCACCCAAAGTTCCCAAANGTTTTCAACGACGAGAAATACAGAGGCCGATTTAAGC 1011
consensus_3991#1 ------------------------------------------------------------
consensus_3991#0 NAAGCCGAGACAAGAAAGAGCCAGTTTTAAAAGAAACCACGGGGNCNAAGAGNCCCAAAG 1071
consensus_3991#1 ------------------------------------------------------------
consensus_3991#0 GCTCCCCGGGTCAAACATTCCCCCCCGGGTGGTGGCAACAAAATCACCGGTTTGGGGGGG 1131
consensus_3991#1 ------------------------------------------------------------
consensus_3991#0 CCCCCCGGTGGTATGAACAGCCCGTTTGTGGATGATATTGGGCGAGCACACCCTCAATAG 1191
consensus_3991#1 ------------------------------------------------------------
consensus_3991#0 AAAAGAGGCACCCAAAGGAGCAGCGCNGATTTGGGGATAATAATCNCCGCTANTCCCGGA 1251
consensus_3991#1 ------------------------------------------------------------
consensus_3991#0 GGAAATANACACCNGGCCNCAGGCTAANAGTTTGGGGCGTGATATGTACGGTAAGCACCG 1311
consensus_3991#1 ------------------------------------------------------------
consensus_3991#0 GNTAGTACCANCCTG 1326
consensus_3991#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||