These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1326 fasta sequence [CCGGTTTTGTCGCAAAAGGAACCTGGAAAGCTACGACAAGTTCTACAAAGACTACGTGGCTCTTCCTGAAGGAAGGCATCTGTGACCAGCCAGGAGCAGCAGGAACAATGGAAGAGATCTGCCAAGCTGCTGCGTGTTCGAAACGAGCAAGGAACCTGAACCTGGACGGTATCTGCTGCCCTGAGTACTGCCAGCTGGCAGTGCGGAATGTGCCAGAAGTGATATCTACTATCTGGCCTGCGCCTGAATCGTACCCTGGCTGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTGTTCTGTTCACGAAGCGTACGATGAGCTGGTTGCTTGATGCAGCTCGGCCATGTATTTGGGCCAACGAATTTAAGTATCGCGTGGAGCACAGCGAGCATTGCGCCGTTCCGATTGCGTTCTGACCGAACGGGCAACGGATGCGGACGGGCTGACTCGAACGGTTCGGCTACCTTGGAAAACACTGGCAAAAATCCGCACTTGGACGCCTTGCCTTGCCCGGTTGGGCCTTGGACACTGTGACCAAAAACTTAAACCCTGTGCCAAAGTGGTTGTTCCGACAACCGTTGACAAGGAACCGGAACCCGGGTGGCACAAGCATTCCGGAATTAACCGGCCAATTCCCAGGGTTGGTTGGTTGGGGTTGAACCAGCGGGTTGCGGAACAGNGAGGCACTTGCGGCCCTGGCGTTGGACCCCCTGGGGGCACCTATTATCAATTCCAAAAGAGAAGCTGGGCCACAGAAAGGGNCCCGATNGAAGACCCANTTTTTAACTGCCCGGTANGACTGTCAAGGTCAGAACCCCCAGGTTTTTAACCGGCCTAGCCCTAGGGTGATGGGACCGAAGAACACGCCGGNCCTCACGGNTTCTCATGGGGACAGACACGTTTCCAAAAGATTCCCCACTAAAATAAGCGAATTTCCCACCCAAAGTTCCCAAANGTTTTCAACGACGAGAAATACAGAGGCCGATTTAAGCNAAGCCGAGACAAGAAAGAGCCAGTTTTAAAAGAAACCACGGGGNCNAAGAGNCCCAAAGGCTCCCCGGGTCAAACATTCCCCCCCGGGTGGTGGCAACAAAATCACCGGTTTGGGGGGGCCCCCCGGTGGTATGAACAGCCCGTTTGTGGATGATATTGGGCGAGCACACCCTCAATAGAAAAGAGGCACCCAAAGGAGCAGCGCNGATTTGGGGATAATAATCNCCGCTANTCCCGGAGGAAATANACACCNGGCCNCAGGCTAANAGTTTGGGGCGTGATATGTACGGTAAGCACCGGNTAGTACCANCCTG] [+] EMBL AL697339 [CCGGTTTTGTCGCAAAAGGAACCTGGAAAGCTACGACAAGTTCTACAAAGACTACGTGGCTCTTCCTGAAGGAAGGCATCTGTGACCAGCCAGGAGCAGCAGGAACAATGGAAGAGATCTGCCAAGCTGCTGCGTGTTCGAAACGAGCAAGGAACCTGAACCTGGACGGTATCTGCTGCCCTGAGTACTGCCAGCTGGCAGTGCGGAATGTGCCAGAAGTGATATCTACTATCTGGCCTGCGCCTGAATCGTACCCTGGCTGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTGTTCTGTTCACGAAGCGTACGATGAGCTGGTTGCTTGATGCAGCTCGGCCATGTATTTGGGCCAACGAATTTAAGTATCGCGTGGAGCACAGCGAGCATTGCGCCGTTCCGATTGCGTTCTGACCGAACGGGCAACGGATGCGGACGGGCTGACTCGAACGGTTCGGCTACCTTGGAAAACACTGGCAAAAATCCGCACTTGGACGCCTTGCCTTGCCCGGTTGGGCCTTGGACACTGTGACCAAAAACTTAAACCCTGTGCCAAAGTGGTTGTTCCGACAACCGTTGACAAGGAACCGGAACCCGGGTGGCACAAGCATTCCGGAATTAACCGGCCAATTCCCAGGGTTGGTTGGTTGGGGTTGAACCAGCGGGTTGCGGAACAGNGAGGCACTTGCGGCCCTGGCGTTGGACCCCCTGGGGGCACCTATTATCAATTCCAAAAGAGAAGCTGGGCCACAGAAAGGGNCCCGATNGAAGACCCANTTTTTAACTGCCCGGTANGACTGTCAAGGTCAGAACCCCCAGGTTTTTAACCGGCCTAGCCCTAGGGTGATGGGACCGAAGAACACGCCGGNCCTCACGGNTTCTCATGGGGACAGACACGTTTCCAAAAGATTCCCCACTAAAATAAGCGAATTTCCCACCCAAAGTTCCCAAANGTTTTCAACGACGAGAAATACAGAGGCCGATTTAAGCNAAGCCGAGACAAGAAAGAGCCAGTTTTAAAAGAAACCACGGGGNCNAAGAGNCCCAAAGGCTCCCCGGGTCAAACATTCCCCCCCGGGTGGTGGCAACAAAATCACCGGTTTGGGGGGGCCCCCCGGTGGTATGAACAGCCCGTTTGTGGATGATATTGGGCGAGCACACCCTCAATAGAAAAGAGGCACCCAAAGGAGCAGCGCNGATTTGGGGATAATAATCNCCGCTANTCCCGGAGGAAATANACACCNGGCCNCAGGCTAANAGTTTGGGGCGTGATATGTACGGTAAGCACCGGNTAGTACCANCCTG] consensusID : consensus_3991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 782 fasta sequence [CTGCAAAACAGTGCGCTCATTCGGAAGCTGCGCACGGCGCTAACGAACCGCACGCTGCGCTTCCTGCACGACCGCTCGCAAAAGGAACCGGAAAGCTACGACAAGTTCTACAAAGACTACGGGCTCTTCCTGAAGGAAGGCATCGTGACCAGCCAGGAGCAGCAGGAAAAGGAAGAGATCGCCAAGCTGCTGCGGTTCGAAACGAGCAAGGAACCGAACCGGACGGTATCGCTGCCCGAGTACTGCCAGCGGCAGGCGGAAGGCCAGAAGGATATCTACTATCTGGCCGCGCCGAATCGTACCCTGGCGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTGTTCTGTTACGAAGCGTACGATGAGCTGGTGCTGATGCAGCTCGGCATGTATTTGGGCAAGAATTTGGTGTCGGTCGAGAAGGAGATGCGCCGTGCAGATGCGTCGACCGATGGGAAGGATGCGGACGGGCTGATCGAAGGTTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGGCTGAAGGACAAACTTACCGGCAAGGTGTCGAACGTGAAGACGACCGGCAAGCTCGATACGCATCCGTGTGTGGTGACGGTGGANGAGATGGCCGCTGCCCGGCACTTTATCAAAACGCAGAGCCACAACATTAGCGAAGAGAACCGTTACGCACTGTTGCAACCGCAGTTTGAAATCNATCCCAAACATCCCATCATTAAGAAGCTACACAAACTAACGAGCAGCAATCCGGAACTGGCCGA] [+] EMBL BX624072 [CTGCAAAACAGTGCGCTCATTCGGAAGCTGCGCACGGCGCTAACGAACCGCACGCTGCGCTTCCTGCACGACCGCTCGCAAAAGGAACCGGAAAGCTACGACAAGTTCTACAAAGACTACGGGCTCTTCCTGAAGGAAGGCATCGTGACCAGCCAGGAGCAGCAGGAAAAGGAAGAGATCGCCAAGCTGCTGCGGTTCGAAACGAGCAAGGAACCGAACCGGACGGTATCGCTGCCCGAGTACTGCCAGCGGCAGGCGGAAGGCCAGAAGGATATCTACTATCTGGCCGCGCCGAATCGTACCCTGGCGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAAGCGCGGCATCGAGGTGCTGTTCTGTTACGAAGCGTACGATGAGCTGGTGCTGATGCAGCTCGGCATGTATTTGGGCAAGAATTTGGTGTCGGTCGAGAAGGAGATGCGCCGTGCAGATGCGTCGACCGATGGGAAGGATGCGGACGGGCTGATCGAAGGTTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGGCTGAAGGACAAACTTACCGGCAAGGTGTCGAACGTGAAGACGACCGGCAAGCTCGATACGCATCCGTGTGTGGTGACGGTGGANGAGATGGCCGCTGCCCGGCACTTTATCAAAACGCAGAGCCACAACATTAGCGAAGAGAACCGTTACGCACTGTTGCAACCGCAGTTTGAAATCNATCCCAAACATCCCATCATTAAGAAGCTACACAAACTAACGA ] [+] EMBL BX608094 [ TGCGCCGTGCAGATGCGTCGACCGATGGGAAGGATGCGGACGGGCTGATGGAAGGTTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGGCTGAAGGACAAACTTACCGGCAAGGTGTCGAACGTGAAGACGACCGGCAAGCTCGATACGCATCCGTGTGTGGTGACGGTGGAGGAGATGGCCGCTGCCCGGCACTTTATCAAAACGCAGAGCCACAACATTAGCGAAGAGAACCGTTACGCACTGTTGCAGCCGTAGTTTGAAATCAATCCCAAACATCCCATCATTAAGAAGCTACACAAACTAACGAGCAGCAATCCGGAACTGGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3991#0 ------------------------------------------------------------ consensus_3991#1 CTGCAAAACAGTGCGCTCATTCGGAAGCTGCGCACGGCGCTAACGAACCGCACGCTGCGC 60 consensus_3991#0 ------CCGGTTTTGTCGCAAAAGGAACCTGGAAAGCTACGACAAGTTCTACAAAGACTA 54 consensus_3991#1 TTCCTGCACGACCGCTCGCAAAAGGAACC-GGAAAGCTACGACAAGTTCTACAAAGACTA 119 * * ************** ****************************** consensus_3991#0 CGTGGCTCTTCCTGAAGGAAGGCATCTGTGACCAGCCAGGAGCAGCAGGAACAATGGAAG 114 consensus_3991#1 CG-GGCTCTTCCTGAAGGAAGGCATC-GTGACCAGCCAGGAGCAGCAGGAAAA--GGAAG 175 ** *********************** ************************ * ***** consensus_3991#0 AGATCTGCCAAGCTGCTGCGTGTTCGAAACGAGCAAGGAACCTGAACCTGGACGGTATCT 174 consensus_3991#1 AGATC-GCCAAGCTGCTGCG-GTTCGAAACGAGCAAGGAACC-GAACC-GGACGGTATC- 230 ***** ************** ********************* ***** ********** consensus_3991#0 GCTGCCCTGAGTACTGCCAGCTGGCAGTGCGGAATGTGCCAGAAGTGATATCTACTATCT 234 consensus_3991#1 GCTGCCC-GAGTACTGCCAGC-GGCAG-GCGGAAG--GCCAGAAG-GATATCTACTATCT 284 ******* ************* ***** ****** ******** ************** consensus_3991#0 GGCCTGCGCCTGAATCGTACCCTGGCTGGAAGCTTCCCCGTACTATGAGTCGCTGAAGAA 294 consensus_3991#1 GGCC-GCGCC-GAATCGTACCCTGGC-GGAAGCTTCCCCGTACTATGAGTCGCTGAAGAA 341 **** ***** *************** ********************************* consensus_3991#0 GCGCGGCATCGAGGTGCTGTTCTGTTCACGAAGCGTACGATGAGCTGGTTGCTTGATGCA 354 consensus_3991#1 GCGCGGCATCGAGGTGCTGTTCTGTT-ACGAAGCGTACGATGAGCTGGTG--CTGATGCA 398 ************************** ********************** ******* consensus_3991#0 GCTCGGCCATGTATTTGGGCCAACGAATTTAAGTATCGCGTGGAGCACAGCGAGCATTGC 414 consensus_3991#1 GCTCGGC-ATGTATTTGGGC--AAGAATTTG-GTGTCG-GTCGAGAA-----GGAGATGC 448 ******* ************ * ****** ** *** ** *** * * *** consensus_3991#0 GCCGTTCCGATTGCGTTCTGACCGAACGGGCAACGGATGCGGACGGGCTGACTCGAACGG 474 consensus_3991#1 GCCGTGCAGAT-GCGTC--GACCGATGGG---AAGGATGCGGACGGGCTGA-TCGAA-GG 500 ***** * *** **** ****** ** * ***************** ***** ** consensus_3991#0 TTCG--GCT-ACCTTGGAAAACACTGGCAAAAATCCGCACTTGGACGCCTTGCCTTGCCC 531 consensus_3991#1 TTCGCTGCTGAAAACGCAAATCGATGAGCTGCTGCCGTGGCTGAAGGACAAACTTA--CC 558 **** *** * * *** * ** *** ** * * * * * ** consensus_3991#0 GGTTGGGCCTTGGACACTGTGACCAAAAACTTAAACCCTGTGCCAAAGTGGTTGTTCCGA 591 consensus_3991#1 GGCAAGGTGTCGAACGTGAAGACGACCGGC--AAGCTCGATACGCATCCGTGTGTGGTGA 616 ** ** * * ** *** * * ** * * * * * * *** ** consensus_3991#0 CAACCGTTGACAAGGAACCGGAACCCGGGTGGCACAAGCATTCCGGAATTAACCGGCCAA 651 consensus_3991#1 CGGTGGANGAGATGG--CCGCTGCCCGG----------CACTTT---ATCAAAACGCAGA 661 * * ** * ** *** ***** ** * ** ** ** * consensus_3991#0 TTCCCAGGGTTGGTTGGTTGGGGTTGAACCAGCGGGTTGCGGAACAGNGAGGCACTTGCG 711 consensus_3991#1 GCCACAACATTAGC------GAAGAGAACC-----GTTACG---CACTGTTGCAACCGCA 707 * ** ** * * ***** *** ** ** * *** ** consensus_3991#0 GCCCTGGCGTTGGACCCCCTGGGGGCACCTATTATCAATTCCAAAAGAGAAGCTGGGCCA 771 consensus_3991#1 GTT-TGAAATCNATCCCAAACATCCCATCATTAAGAAGCTACACAAACTAA--CGAGCAG 764 * ** * *** ** * * * * * ** ** ** * ** consensus_3991#0 CAGAAAGGGNCCCGATNGAAGACCCANTTTTTAACTGCCCGGTANGACTGTCAAGGTCAG 831 consensus_3991#1 CA-ATCCGGAACTGGCCGA----------------------------------------- 782 ** * ** * * ** consensus_3991#0 AACCCCCAGGTTTTTAACCGGCCTAGCCCTAGGGTGATGGGACCGAAGAACACGCCGGNC 891 consensus_3991#1 ------------------------------------------------------------ consensus_3991#0 CTCACGGNTTCTCATGGGGACAGACACGTTTCCAAAAGATTCCCCACTAAAATAAGCGAA 951 consensus_3991#1 ------------------------------------------------------------ consensus_3991#0 TTTCCCACCCAAAGTTCCCAAANGTTTTCAACGACGAGAAATACAGAGGCCGATTTAAGC 1011 consensus_3991#1 ------------------------------------------------------------ consensus_3991#0 NAAGCCGAGACAAGAAAGAGCCAGTTTTAAAAGAAACCACGGGGNCNAAGAGNCCCAAAG 1071 consensus_3991#1 ------------------------------------------------------------ consensus_3991#0 GCTCCCCGGGTCAAACATTCCCCCCCGGGTGGTGGCAACAAAATCACCGGTTTGGGGGGG 1131 consensus_3991#1 ------------------------------------------------------------ consensus_3991#0 CCCCCCGGTGGTATGAACAGCCCGTTTGTGGATGATATTGGGCGAGCACACCCTCAATAG 1191 consensus_3991#1 ------------------------------------------------------------ consensus_3991#0 AAAAGAGGCACCCAAAGGAGCAGCGCNGATTTGGGGATAATAATCNCCGCTANTCCCGGA 1251 consensus_3991#1 ------------------------------------------------------------ consensus_3991#0 GGAAATANACACCNGGCCNCAGGCTAANAGTTTGGGGCGTGATATGTACGGTAAGCACCG 1311 consensus_3991#1 ------------------------------------------------------------ consensus_3991#0 GNTAGTACCANCCTG 1326 consensus_3991#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||