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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3994#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1084 fasta sequence
[CCGGCAACGTATGCGACGAACATTCGTCAGTCGATGGTGGTAACGTTCGGAGCAAGAGATCGTCATGGAGAAACACTTTCTGTTGGGACTTGTGCTGCTGGCGTTCAAACTTAGTGTTAAGTGTGTTGTAATTAATCCGGCTGTGGCATATCATCTGGAGTACGATTTGGCGGACAATGTCGACTGGGTCCGTATCCCAACGATGGTCGGCGAATGGATTTGGACGCATCGACGCTCGGTTAATGCGATGATGAAACAACACCGATCGGACGAGCCGCCAGTTAAAATTGAATTTCTGCTGCATACACGACGAGACACTGCAGACGAAGGTCATTTGTTGGAGGTAGGAAATGTTGACTCCTTGCTAGGTTCCAACTTCCGGTCCGATCTTCCAACAAGGATCATCGTGCATGGTTGGCAAAGCAGCAAAAGCTCCCCGCTAGCGGAAAGTATTCGTGATACGTATCTGCTGCTTTGGGACTACAATGTGATCGTGGTGGACTGGTCTGATTGTGCGTTGGGCTGGAACTACGTACGAGCGGTCGGGTGTGTTCCCCGTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAGCAGCATGCCGGGCTGATGATGGAAGAATGTGTACGTCGTTGGGCACAGTTTGGGAGC-GCACGTTGCC-GGCATAGCTTGGCAAGAGGGTTCAGAATGGACAGCTGCATACCATCATTGGCCTTGATCCGGCTACTGCCACTGTTTTCGATTCACGAGAAAGAAAATCTGCATCGACCATCAGTGACGCAATGTATGTGGAGGTGATACATACCGGCGGAGTGGCTTCTCGGTTTNTCGGGATACCGATCGGGACGGNTGACTTATTACACCGAACGGAGGCTCCCATCAACCGGGCTGTGGCGCTTGGCACCGTTGTNGGACTGTGTTCGCACACTCGNTGCTTGGNGCAGCTGTACTGCGNGAGCTCGCTTAGCTAGNAGCCGGTGNGCAAAACTNTGGTGGCCACGACGGATATGACACTCGCATGGACGCGACGANATACACGCACCTGCNCGCCCTGTGGACGCATGGATNCCCANCGGACT]
[+] EMBL BM607081 [CCGGCAACGTATGCGACGAACATTCGTCAGTCGATGGTGGTAACGTTCGGAGCAAGAGATCGTCATGGAGAAACACTTTCTGTTGGGACTTGTGCTGCTGGCGTTCAAACTTAGTGTTAAGTGTGTTGTAATTAATCCGGCTGTGGCATATCATCTGGAGTACGATTTGGCGGACAATGTCGACTGGGTCCGTATCCCAACGATGGTCGGCGAATGGATTTGGACGCATCGACGCTCGGTTAATGCGATGATGAAACAACACCGATCGGACGAGCCGCCAGTTAAAATTGAATTTCTGCTGCATACACGACGAGACACTGCAGACGAAGGTCATTTGTTGGAGGTAGGAAATGTTGACTCCTTGCTAGGTTCCAACTTCCGGTCCGATCTTCCAACAAGGATCATCGTGCATGGTTGGCAAAGCAGCAAAAGCTCCCCGCTAGCGGAAAGTATTCGTGATACGTATCTGCTGCTTTGGGACTACAATGTGATCGTGGTGGACTGGTCTGATTGTGCGTTGGGCTGGAACTACGTACGAGCGGTCGGGTGTGTTCCCCGTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAGCAGCATGCCGGGCTGATGATGGAAGAATGTGTACGTCGTTGGGCACAGTTTGGGAGC GCACGTTGCC GGCATAGCTTGGCAAGAGGGTTCAGAATGGACAGCTGCAT ]
[+] EMBL AL930267 [ tgcccgaGGTTTGATTGTGCGTTGGGCTGGAACTACGTACGAGCGGTCGGGTGTGTT CCCGTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAGCAGCATGCCGGGCTGATGATGG AGAATGTGTACGTCGTTGGGCACAGTTTGGGAGCTGCACGTTGCCTGGCATAGC TGGCAAGAGGGTTCAGAATGGACAGCTCCATACCATCATTGGCCTTGATCCGGCTACTGCCACTGTTTTCGATTCACGAGAAAGAAAATCTGCATCGACCATCAGTGACGCAATGTATGTGGAGGTGATACATACCGGCGGAGTGGCTTCTCGGTTTNTCGGGATACCGATCGGGACGGNTGACTTATTACACCGAACGGAGGCTCCCATCAACCGGGCTGTGGCGCTTGGCACCGTTGTNGGACTGTGTTCGCACACTCGNTGCTTGGNGCAGCTGTACTGCGNGAGCTCGCTTAGCTAGNAGCCGGTGNGCAAAACTNTGGTGGCCACGACGGATATGACACTCGCATGGACGCGACGANATACACGCACCTGCNCGCCCTGTGGACGCATGGATNCCCANCGGACT]
consensusID : consensus_3994#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence
[ATCCCCCGAGGTTAGTTCAAACTAAGTGTTAGTGTGTTGTATTAATCCGGCTGTGGCATATCATCTGGAGTACGATTTGGCGGACAATGTCGACTGGGTACGCATCCCAACGATGGTGGGTGAATGGATTTGGACGCATCGACGCTCGGTTAATGCGATGATGAAACAACACCGATCGGACGAGCCGCCAGTTAAAATTGAATTTCTGCTGCATACACGACGAGACACTGCAGACGAAGGTCATTTGTTGGAGGTAGGAAATGTTGACTCCTTGCTAGGTTCCAACTTCCGGTCCGATCTGCCAACAAGGATCATCGTGCATGGTTGGCAAAGCAGCAAAAGCTCCCCGCTAGCGGCAAAGTATTCGTGATACGTATCTGCTGCTTTGGGACTACAATGTGATCGTGGTGGACTGGTCTGATTGTGCGTTGGGCTGGAACTACGTACGAGCGGTCGGGTGTGTTCCCGTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAGCAGCATGCCGGGCTGATGATGGAGAATGTGTACGTCGTATGGGCACAGNTNNNGGGAGCGCACGTTGCCGGACATAGCTGGCCAAGAGGGTTCAGAATGGACAGTCCATACATCATTGGCTTGATCCGGCACTGCCACTGTTTTCGATTCACGACAAAGCAAAATCGATCGACCATCACGGACGCAATGTATGTCGGCAGGTGAATACATTACCGGCAGGAAAGGCTTCANCGAG]
[+] EMBL AL697436 [ATCCCCCGAGGTTAGTTCAAACTAAGTGTTAGTGTGTTGTATTAATCCGGCTGTGGCATATCATCTGGAGTACGATTTGGCGGACAATGTCGACTGGGTACGCATCCCAACGATGGTGGGTGAATGGATTTGGACGCATCGACGCTCGGTTAATGCGATGATGAAACAACACCGATCGGACGAGCCGCCAGTTAAAATTGAATTTCTGCTGCATACACGACGAGACACTGCAGACGAAGGTCATTTGTTGGAGGTAGGAAATGTTGACTCCTTGCTAGGTTCCAACTTCCGGTCCGATCTGCCAACAAGGATCATCGTGCATGGTTGGCAAAGCAGCAAAAGCTCCCCGCTAGCGGCAAAGTATTCGTGATACGTATCTGCTGCTTTGGGACTACAATGTGATCGTGGTGGACTGGTCTGATTGTGCGTTGGGCTGGAACTACGTACGAGCGGTCGGGTGTGTTCCCGTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAGCAGCATGCCGGGCTGATGATGGAGAATGTGTACGTCGTATGGGCACAGNTNNNGGGAGCGCACGTTGCCGGACATAGCTGGCCAAGAGGGTTCAGAATGGACAGTCCATACATCATTGGCTTGATCCGGCACTGCCACTGTTTTCGATTCACGACAAAGCAAAATCGATCGACCATCACGGACGCAATGTATGTCGGCAGGTGAATACATTACCGGCAGGAAAGGCTTCANCGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3994#0 CCGGCAACGTATGCGACGAACATTCGTCAGTCGATGGTGGTAACGTTCGGAGCAAGAGAT 60
consensus_3994#1 ------------------------------------------------------------
consensus_3994#0 CGTCATGGAGAAACACTTTCTGTTGGGACTTGTGCTGCTGGCGTTCAAACTTAGTGTTAA 120
consensus_3994#1 --------------------------ATCCCCCGAGGTTAG--TTCAAACTAAGTGTTA- 31
* * * * * ******** *******
consensus_3994#0 GTGTGTTGTAATTAATCCGGCTGTGGCATATCATCTGGAGTACGATTTGGCGGACAATGT 180
consensus_3994#1 GTGTGTTGTA-TTAATCCGGCTGTGGCATATCATCTGGAGTACGATTTGGCGGACAATGT 90
********** *************************************************
consensus_3994#0 CGACTGGGTCCGTATCCCAACGATGGTCGGCGAATGGATTTGGACGCATCGACGCTCGGT 240
consensus_3994#1 CGACTGGGTACGCATCCCAACGATGGTGGGTGAATGGATTTGGACGCATCGACGCTCGGT 150
********* ** ************** ** *****************************
consensus_3994#0 TAATGCGATGATGAAACAACACCGATCGGACGAGCCGCCAGTTAAAATTGAATTTCTGCT 300
consensus_3994#1 TAATGCGATGATGAAACAACACCGATCGGACGAGCCGCCAGTTAAAATTGAATTTCTGCT 210
************************************************************
consensus_3994#0 GCATACACGACGAGACACTGCAGACGAAGGTCATTTGTTGGAGGTAGGAAATGTTGACTC 360
consensus_3994#1 GCATACACGACGAGACACTGCAGACGAAGGTCATTTGTTGGAGGTAGGAAATGTTGACTC 270
************************************************************
consensus_3994#0 CTTGCTAGGTTCCAACTTCCGGTCCGATCTTCCAACAAGGATCATCGTGCATGGTTGGCA 420
consensus_3994#1 CTTGCTAGGTTCCAACTTCCGGTCCGATCTGCCAACAAGGATCATCGTGCATGGTTGGCA 330
****************************** *****************************
consensus_3994#0 AAGCAGCAAAAGCTCCCCGCTAGCGG-AAAGTATTCGTGATACGTATCTGCTGCTTTGGG 479
consensus_3994#1 AAGCAGCAAAAGCTCCCCGCTAGCGGCAAAGTATTCGTGATACGTATCTGCTGCTTTGGG 390
************************** *********************************
consensus_3994#0 ACTACAATGTGATCGTGGTGGACTGGTCTGATTGTGCGTTGGGCTGGAACTACGTACGAG 539
consensus_3994#1 ACTACAATGTGATCGTGGTGGACTGGTCTGATTGTGCGTTGGGCTGGAACTACGTACGAG 450
************************************************************
consensus_3994#0 CGGTCGGGTGTGTTCCCCGTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAG 599
consensus_3994#1 CGGTCGGGTGTGTTCCC-GTGGTTGGTCAAACACTTGCCCGTCTGCTCGACGAGTTTCAG 509
***************** ******************************************
consensus_3994#0 CAGCATGCCGGGCTGATGATGGAAGAATGTGTACGTCGT-TGGGCACAGTTTGGG--AGC 656
consensus_3994#1 CAGCATGCCGGGCTGATGATGGA-GAATGTGTACGTCGTATGGGCACAGNTNNNGGGAGC 568
*********************** *************** ********* * * ***
consensus_3994#0 GCACGTTGCCGG-CATAGCTTGGCAAGAGGGTTCAGAATGGACAGCTGCATACCATCATT 715
consensus_3994#1 GCACGTTGCCGGACATAGCTGGCCAAGAGGGTTCAGAATGGACAGTC-CATAC-ATCATT 626
************ ******* * ********************** ***** ******
consensus_3994#0 GGCCTTGATCCGGCTACTGCCACTGTTTTCGATTCACGAGAAAGAAAATCTGCATCGACC 775
consensus_3994#1 GGC-TTGATCCGGC-ACTGCCACTGTTTTCGATTCACGACAAAGCAAAATCG-ATCGACC 683
*** ********** ************************ **** *** * *******
consensus_3994#0 ATCAGTGACGCAATGTATGTGG--AGGTGA-TACAT-ACCGGC-GGAGTGGCTTCTCGGT 830
consensus_3994#1 ATCACGGACGCAATGTATGTCGGCAGGTGAATACATTACCGGCAGGAAAGGCTTCANCGA 743
**** ************** * ****** ***** ****** *** ****** *
consensus_3994#0 TTNTCGGGATACCGATCGGGACGGNTGACTTATTACACCGAACGGAGGCTCCCATCAACC 890
consensus_3994#1 G----------------------------------------------------------- 744
consensus_3994#0 GGGCTGTGGCGCTTGGCACCGTTGTNGGACTGTGTTCGCACACTCGNTGCTTGGNGCAGC 950
consensus_3994#1 ------------------------------------------------------------
consensus_3994#0 TGTACTGCGNGAGCTCGCTTAGCTAGNAGCCGGTGNGCAAAACTNTGGTGGCCACGACGG 1010
consensus_3994#1 ------------------------------------------------------------
consensus_3994#0 ATATGACACTCGCATGGACGCGACGANATACACGCACCTGCNCGCCCTGTGGACGCATGG 1070
consensus_3994#1 ------------------------------------------------------------
consensus_3994#0 ATNCCCANCGGACT 1084
consensus_3994#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||