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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 934 fasta sequence
[GTAGTAGTAGTAGTGGTACTACACTACTACCACTACAACTACAGCAGCGCAATGTAGCTGTGGCAGTATATTTAAATGCTTGAAGGGGGTTCTTCCACGCGGAGGAAGTGTGTGTGTGACGGTGTTCTTAAGATGG-ATTGTTGGGGGGTGCAAATGGGTGCAGCACGTCTCGTTGCACCCTCTTTCGCAGCTTTTCCACAGTAATAGCAGCAGCAGCAGCAGCCGCAGCAGTAGCAGTAGTAATAGTAGTTTGCTAGTGTGTTCCCCTTTAGCTTATTTCAGTATCGTTAAACATCCCTACCGCTTAAATACAACGCACACGACGCAGCACATCGTTCTGTGCACACTCTTACCAATTACCCCCGCATCCGATGGGTAACCGGAAATGCTGCACACTGGTGCTGGTGCGCTTCCCTACCTTACAATAA----TAAAAAAAAACGATCCTAATCCTGCCACTTACTATCGTAGAGCTAATAGTAGTACTCTTTCATCATTCACAACACAGATTTACGCGCACACACAACGCAGCGGCGGTCCGAGGGGGGAGGGGGG-------AAAGCTTCCTTGCTCAATATTCAATTAAACACTTCACTTATCTACAATGCAAAACTCTCTATTGCAAACAATCCCGTTTTGGGGTGTGGGATCGTCCCTCTCGTTCCCTCTCCTCCTAACGCAACAATGCTGGAAGATGTACAACAGAAGAGAGAAAAAAAAAACGCGATCCTCTAACAAGCTAACTGCCTTAAACGTAAAACAATTCATTACTTCCGGGTTTTCACTTCACGTTACAGTTTACTGTACAAAAAAAAACGACTCTAGCTGTATAATTAGGTGAGGAATGAAGTATTGTTACAATCTGCCAAAACACACACGCACACCTTCAACTTTGGGTGTGTATGTGTGAGTATATGTCTGAGTGTGTGTTTTTAAAATA]
[+] EMBL CNS09O5N [GTAGTAGTAGTAGTGGTACTACACTACTACCACTACAACTACAGCAGCGCAATGTAGCTGTGGCAGTATATTTAAATGCTTGAAGGGGGTTCTTCCACGCGGAGGAAGTGTGTGTGTGACGGTGTTCTTAAGATGG ATTGTTGGGGGGTGCAAATGGGTGCAGCACGTCTCGTTGCACCCTCTTTCGCAGCTTTTCCACAGTAATAGCAGCAGCAGCAGCAGCCGCAGCAGTAGCAGTAGTAATAGTAGTTTGCTAGTGTGTTCCCCTTTAGCTTATTTCAGTATCGTTAAACATCCCTACCGCTTAAATACAACGCACACGACGCAGCACATCGTTCTGTGCACACTCTTACCAATTACCCCCGCATCCGATGGGTAACCGGAAATGCTGCACACTGGTGCTGGTGCGCTTCCCTACCTTACAATAA TAAAAAAAAACGATCCTAATCCTGCCACTTACTATCGTAGAGCTAATAGTAGTACTCTTTCATCATTCACAACACAGATTTACGCGCACACACAACGCAGCGGCGGTCCGAGGGGGGAGGGGGG AAAGCTTCCTTGCTCAATATTCAATTAAACACTTCACTTATCTACAATGCAAAACTCTCTATTGCAAACAATCCCGTTTTGGGGTGTGGGATCGTCCCTCTCGTTCCCTCTCCTCCTAACGCAACAATGCTGGAAGATGTACAACAGAAGAGAGAAAAAAAAAACGCGATCCTCTAACAAGCTAACTGCCTTAAACGTAAAACAATTCATTACTTCCGGGTTTTCACTTCACGTTACAGTTTACTGTACAAAAAAAAACGACTCTAGCTGTATAATTAGGTGAGGAATGAAGTATTGTTACAATCTGCCAAAACACACACGCACACCTTCAACTTTGGGTGTGTATGTGTGAGTATATGTCTGAGTGTGTGTTTTTAAAATA]
[-] EMBL BX622296 [ ACGGTGTTCTTAAGATGGAATTGTTGGGGGGTGCAAATGGGTGCTGCACGTCTCGTTGCACCTTCTTTCGCAGCTTTTCCACAGTAATAGTAGTAGCAGTAGTAGTCGTAGTAGTAGTAGTAGTAATAGTAGTTTGCTAGTGTGTTCCCCTTTAGCTTATTTCAGTATCGTTAAACATCCCTACCGCTTAAATACACCGCACACGACGCAGCACATCGTTTTGTGCACACTCTTACCAATTACCCCCGCATCCGATGGGTAACCGGAAATGCTGCACACTGGTGCTGGTGCGCTTCCCTACCTTACAATAATAATTAAAAAAAAACGATCCTAATCCTGCCACTTACTATCGTAGAGCTAATAGTAGTACTCTTTCATCATTCACAACACAGATATACGCGCACACACAACGCAGCGGCGGTCCGAGGGGGGGGGGGGGGGTGGGTGAAGCTTCCTTGCTCAATATTCAATTAAACACTTCACTTATCTACAATGCAAAACTCCCTAATGCAAACAATCCCGTTTTGGGG GTGGGATCGTCCCTCTCGTTCCCTCTCCTCCTAACGCAACAATGCTGGAAGATGTACAACAGAAGAGAG ]
consensusID : consensus_3996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[CGGCGAACTTGCCAACCACCCTTTNCCCAGATANTGTTTCCCCACAAACGTTCGTTTGGGAATAACGCCCCCAGTTNTTNGGCTCTATTGCGGATTTCCGGGGACCCANGACTNTTGANGCCCGNCAGGNCATTTTTTACCCTTGNTTGTCGTTGTAATGTTNTCTNTTCCCCTTCGTTGTACTGCCGTGAAGCCCCTTTTGTAACCGGTACTGTTCTCTACTTCGCGCCAGTAGGAGGCCGCTTAGAAGCCACCCGGTGTCCCCAANCANGTATGAACAANGGGGGGAAGGTTTGGGAATTCTCTTTGGNGTGGTTGTTTTTGCCCCCCCTTTCTCCGGCGGATTCGGTTGCATTGTCGTTTAGCGCTCTCCTTCTCGCAGTGTTTTAAGGGTAGCAGCAATTTGACAAAGTAAAATGGTAGTGGTAGTAGTAGTAGTAGTAGTAGTGGTACTACACTACTACTACTACAACTACAGCAGCGCAATGTAGCTGTGGCAGTATATTTAAATGTTGAAAGGGGTTCTTCCACGCGTAGGAAGTGTGTGTGTGACGGTGTTCTTAAGATGGATTGTTGGGGGGTGCAAATGGGTGCTGCACGTCTCGTTGCACCTTCTTTCGCAGCTTAACCCCTGGGC]
[-] EMBL AL697480 [CGGCGAACTTGCCAACCACCCTTTNCCCAGATANTGTTTCCCCACAAACGTTCGTTTGGGAATAACGCCCCCAGTTNTTNGGCTCTATTGCGGATTTCCGGGGACCCANGACTNTTGANGCCCGNCAGGNCATTTTTTACCCTTGNTTGTCGTTGTAATGTTNTCTNTTCCCCTTCGTTGTACTGCCGTGAAGCCCCTTTTGTAACCGGTACTGTTCTCTACTTCGCGCCAGTAGGAGGCCGCTTAGAAGCCACCCGGTGTCCCCAANCANGTATGAACAANGGGGGGAAGGTTTGGGAATTCTCTTTGGNGTGGTTGTTTTTGCCCCCCCTTTCTCCGGCGGATTCGGTTGCATTGTCGTTTAGCGCTCTCCTTCTCGCAGTGTTTTAAGGGTAGCAGCAATTTGACAAAGTAAAATGGTAGTGGTAGTAGTAGTAGTAGTAGTAGTGGTACTACACTACTACTACTACAACTACAGCAGCGCAATGTAGCTGTGGCAGTATATTTAAATGTTGAAAGGGGTTCTTCCACGCGTAGGAAGTGTGTGTGTGACGGTGTTCTTAAGATGGATTGTTGGGGGGTGCAAATGGGTGCTGCACGTCTCGTTGCACCTTCTTTCGCAGCTTAACCCCTGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3996#0 GTAGTAGTAGTAGTGGTACTACACTACTACCACTACAACTACAGCAGCGCAATGTAGCTG 60
consensus_3996#1 -----------------------CGGCGAACTTGCCAACCACCCTTTNCCCAGATAN-TG 36
* * * * **** ** * * ** **
consensus_3996#0 TGGCAGTATATTTAAATGCTTGAAGGGGGTTCTTCCACGCGGAGGAAGTGTGTGTGTGAC 120
consensus_3996#1 TTTCCCCACAAACGTTCGTTTGGGAATAACGCCCCCAGTTNTTNGGC-----TCTATTGC 91
* * * * * *** * *** * * * * *
consensus_3996#0 GGTGTTCTTAAGAT---GGATTGTTGGGGGGTGCAAATGGGTGCAGCACGTCTCGTTGCA 177
consensus_3996#1 GGATTTCCGGGGACCCANGACTNTTGANGCCCGNCAGGNCATTTTTTACCCTTGNTTGT- 150
** *** ** ** * *** * * * * ** * ***
consensus_3996#0 CCCTCTTTCGCAGCTTTTCCACAGTAATAGCAGCAGCAGCAGCAGCCGCAGCAGTAGCAG 237
consensus_3996#1 CGTTGTAATGTTNTCTNTTCCCCTTCGTTGTA-CTGCCGT-GAAGCCCCTTTTGTAACCG 208
* * * * * * * * * * * * * ** * * **** * *** * *
consensus_3996#0 TAGTAATAGTAGTTTGCTAGTGTGTTCCCCTTT-AGCTTATTTCAGTATCGTTAAACATC 296
consensus_3996#1 --GTACT----GTTCTCTACTTCGCGCCAGTAGGAGGCCGCTTAGAAGCCACCCGGTGTC 262
*** * *** *** * * ** * ** ** * **
consensus_3996#0 CCTA-CCGCTTAAATACAACGCACACGACGCAGCACATCGTTCTGTGCACACTCTTACCA 355
consensus_3996#1 CCCAANCANGTATGAACAANGGGGGGAAGGTTTGGGAATTCTCTTTG-GNGTGGTTGTTT 321
** * * ** **** * * * * *** ** **
consensus_3996#0 ATTACCCCCGCATCCGATGGGTAACCGGAAATGCTGCACACTGGTGCTGGTGCGCTTCCC 415
consensus_3996#1 -TTGCCCCCCCTTTCTCCGG-----CGGATTCGGT-TGCATTGTCGTTTA-GCGCTCTCC 373
** ***** * * * ** **** * * ** ** * * ***** **
consensus_3996#0 TACCTTACAATAATAAAAAAAAACGATCCTAATCCTGCCACTTACTATCGTAGAGCTAAT 475
consensus_3996#1 T-TCTCGCAGTGTTTTAAGGGTAGCAGC--AATTTGACAAAGTAAAATGGTAGTGGTAGT 430
* ** ** * * ** * * * *** * * ** ** **** * ** *
consensus_3996#0 AGTAGTACTCTTTCATCATTCACAACACAGATTTACGCGCACACACAACGCAGCGGCGGT 535
consensus_3996#1 AGTAGTAGTAGT--AGTAGTGGTACTACACTACTACTACTACAACTACAGCAGCGCAATG 488
******* * * * * * * *** *** *** * ******
consensus_3996#0 CCGAGGGGGGAGGGGGGAAAGCTTCCTTGCTCAATATTCAATTAAACACTTCACTTATCT 595
consensus_3996#1 TAGCTGTGGCAGTATATTTAAATG--TTGAAAGGGGTTCTTCCACGCGTAGGAAGTGTGT 546
* * ** ** * * *** *** * * * * * *
consensus_3996#0 ACAATGCAAAACTCTCTATTGCAAACAATCCCGTTTTGGGGTGTGGGATCGTCCCTCTCG 655
consensus_3996#1 GTGTGACGGTGTTCT-TAAGATGGATTGTTGGGGGGTGCAAATGGGTGCTGCACGTCTCG 605
* *** ** * * * ** ** * * *****
consensus_3996#0 TTCCCTCTCCTCCTAACGCAACAATGCTGGAAGATGTACAACAGAAGAGAGAAAAAAAAA 715
consensus_3996#1 TTGCACCTTCTTTCGCAGCTTAACCCCTGGGC---------------------------- 637
** * ** ** ** * ****
consensus_3996#0 ACGCGATCCTCTAACAAGCTAACTGCCTTAAACGTAAAACAATTCATTACTTCCGGGTTT 775
consensus_3996#1 ------------------------------------------------------------
consensus_3996#0 TCACTTCACGTTACAGTTTACTGTACAAAAAAAAACGACTCTAGCTGTATAATTAGGTGA 835
consensus_3996#1 ------------------------------------------------------------
consensus_3996#0 GGAATGAAGTATTGTTACAATCTGCCAAAACACACACGCACACCTTCAACTTTGGGTGTG 895
consensus_3996#1 ------------------------------------------------------------
consensus_3996#0 TATGTGTGAGTATATGTCTGAGTGTGTGTTTTTAAAATA 934
consensus_3996#1 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||