These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CCGCGTCGCGGTGCAATCAACAACAACGCTCGGTTTCCAAATGATTGTGTTTAAATTAAGTGTAATAAGTTAAGCAGAAAACACACGTTGTTCCAAATTGTGCTCCAATGTTTTGGAAATGGCTGGAGGACAACTTCAAGTACCGGCGAAAGTGCGCGATCGTGTTTGGCCGGAGGCGCCGTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCCCTGCTGGGCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACCGGCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTGCTGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAGTTCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGGGATGTGGCCGGTGTCCCGAAGCGGCTGATCGCACTCGACGTGCTGAACCTGCTGCACGAAGAGTACGACGATACGCGCCTTCACTTTGCCAAGCGCTATCTGCAGCTGATGCGCCGCTACACCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCGTACCTGGTGGTGCCGA] [+] EMBL BM622234 [CCGCGTCGCGGTGCAATCAACAACAACGCTCGGTTTCCAAATGATTGTGTTTAAATTAAGTGTAATAAGTTAAGCAGAAAACACACGTTGTTCCAAATTGTGCTCCAATGTTTTGGAAATGGCTGGAGGACAACTTCAAGTACCGGCGAAAGTGCGCGATCGTGTTTGGCCGGAGGCGCCGTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCCCTGCTGGGCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACCGGCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTGCTGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAGTTCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGGGATGTGGCCGGTGTCCCGAAGCGGCTGATCGCACTCGACGTGCTGAACCTGCTGCACGAAGAGTACGACGATACGCGCCTTCACTTTGCCAAGCGCTATCTGCAGCTGATGCGCCGCTACACCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCGTACCTGGTGGTGCCGA] consensusID : consensus_4001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [CCGGCGCATCGACGCACAATGCACCGCGGATTAAGTTACAGCATCAATGCCGCGCACTACCACCCACAGCACATCCGCGACAGAACGGCTTGCTGAGGTGTTCCTTTTTGCGGTGTTGTGTTGTGTTGCAAAAGGGAAAAAAGCGCGATCGTGTTTGGCCGGAGGCGCCGTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCCCTGCTGGCCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACCGGCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTGTTGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAGTTCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGGGATGTGGCCGGCGTACCGAAGCGGCTGATCGCACTCGATGTGCTGAACCTGCTGCACGAAGAGTACGACGATACGCGCCTTCACTTTGCCAAGCGCTATCTGCAGCTGATGCGCCGCTACACCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCGGTACCTGGTGGTGC] [+] EMBL BM607264 [CCGGCGCATCGACGCACAATGCACCGCGGATTAAGTTACAGCATCAATGCCGCGCACTACCACCCACAGCACATCCGCGACAGAACGGCTTGCTGAGGTGTTCCTTTTTGCGGTGTTGTGTTGTGTTGCAAAAGGGAAAAAAGCGCGATCGTGTTTGGCCGGAGGCGCCGTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCCCTGCTGGCCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACCGGCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTGTTGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAGTTCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGGGATGTGGCCGGCGTACCGAAGCGGCTGATCGCACTCGATGTGCTGAACCTGCTGCACGAAGAGTACGACGATACGCGCCTTCACTTTGCCAAGCGCTATCTGCAGCTGATGCGCCGCTACACCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCGGTACCTGGTGGTGC] consensusID : consensus_4001#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [CAGAATNGCCCGAGGCTATGCCTGTTTTTTTTTTTTTTTTTTGCTAGCATGTACGGTATAATTTATTTTGATTGTAACTGGTGGTCCAGCCACGCTGACCCAATTTGGCGGCTTTCCTAGCAACAAGGCAGACCGGCGGAGACAGGACGGAAAAGAATATCGCATTACATGCCATTCGATGGAATAAAACACTTGTGAAATGAATTTTAAACAAAAGAAAGCCTAACCTAAACATCAGCAGTTGCCGTATGTAACGTTATATCGCCCCCGCTACGTTACAAAACTGCTGCGTGTACTGCGTGGTGCTTTGCGTTTTGCGCGCGCTGTGTGTTGTGTCTTGCGCATCTGACGCACAATGCACCGCGGATTAAGTTACAGCATCAACGCCGCGCACTAACACCCACAGCACGTCCGCGACAGAACGGCTTGCTGAGGTGTTCCTTTTTGGGGTGTAGTGTATGTGTTGCAAAAAAAAAAAAAAAA] [+] EMBL AL713818 [CAGAATNGCCCGAGGCTATGCCTGTTTTTTTTTTTTTTTTTTGCTAGCATGTACGGTATAATTTATTTTGATTGTAACTGGTGGTCCAGCCACGCTGACCCAATTTGGCGGCTTTCCTAGCAACAAGGCAGACCGGCGGAGACAGGACGGAAAAGAATATCGCATTACATGCCATTCGATGGAATAAAACACTTGTGAAATGAATTTTAAACAAAAGAAAGCCTAACCTAAACATCAGCAGTTGCCGTATGTAACGTTATATCGCCCCCGCTACGTTACAAAACTGCTGCGTGTACTGCGTGGTGCTTTGCGTTTTGCGCGCGCTGTGTGTTGTGTCTTGCGCATCTGACGCACAATGCACCGCGGATTAAGTTACAGCATCAACGCCGCGCACTAACACCCACAGCACGTCCGCGACAGAACGGCTTGCTGAGGTGTTCCTTTTTGGGGTGTAGTGTATGTGTTGCAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4001#0 CCGCGTCGCGGTGCAATCAACAACAACGCTCGGTTT-CCAAATGATTGTGTTTAAATTAA 59 consensus_4001#1 -------CCGGCGCATCGACGCACAATGCACCGCGGATTAAGTTACAGCATC--AATGCC 51 consensus_4001#2 ------------------------------------------------------------ consensus_4001#0 GTGTAATAAGTTAAGCAGAAAACACACGTTGTTCCAAATTGTGCTCCAATGTTTTGGAAA 119 consensus_4001#1 GCGCACTA--CCACCCACAGCACATCCGCGACAGAACGGCTTGCTGAGGTGTTCCTTTTT 109 consensus_4001#2 -------------------------------CAGAATNGCCCGAGGCTATGCCTGTTTTT 29 * * ** consensus_4001#0 TGGCTGGAGGACAACTTCAAGTACCGGCGAAAGTGCGCGATCGTGTTTGGCCGGAGGCGC 179 consensus_4001#1 GCGGTGTTGTGTTGTGTTGCAAAA-GGGAAAAAAGCGCGATCGTGTTTGGCCGGAGGCGC 168 consensus_4001#2 TTTTTTTTTTTTTGC-TAGCATGT-------ACGGTATAATTTATTTTGATTGTAACTG- 80 * * * * ** **** * * * consensus_4001#0 CGTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCC 239 consensus_4001#1 CGTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCC 228 consensus_4001#2 -GTGGTCCAGCC----ACGCTGACCCAATTTGGCGGCTTTCCTAGCAACAAG-------- 127 ** * * * * * ** * * * * ** **** ** consensus_4001#0 CTGCTGGGCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACC 299 consensus_4001#1 CTGCTGGCCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACC 288 consensus_4001#2 --GCAGACCGGCGGAGACAGGACGGAAAAGAATATCGCA--TTACATGCCATT------C 177 ** * * ** ** *** * * ** * **** ** ** * consensus_4001#0 GGCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTG 359 consensus_4001#1 GGCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTG 348 consensus_4001#2 GATGG-AATAAAACACTTGTGAAATGAATTTTAAACAAAAGAAAGCCTAAC--------- 227 * ** * *** * ****** **** ** **** ** ** * consensus_4001#0 CTGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAG 419 consensus_4001#1 TTGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAG 408 consensus_4001#2 ---CTAAAC-ATCAGCAGTTGCCGTATGTAACGTTATATCGCCC--CCGCTACGTTACAA 281 ** * * * ** * * * *** * ** * * * *** ** consensus_4001#0 TTCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGG 479 consensus_4001#1 TTCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGG 468 consensus_4001#2 AACTGCTGCGTGTACTGCGTG---GTGCTTT----GCGTTTTGC-----GCGCGCTGTGT 329 * * * **** *** ****** ***** ** ** **** * consensus_4001#0 GATGTGGCCGGTGTCCCGAAGCGGCTGATCGCACTCGACGTGCTGAACCTGCTGCACGAA 539 consensus_4001#1 GATGTGGCCGGCGTACCGAAGCGGCTGATCGCACTCGATGTGCTGAACCTGCTGCACGAA 528 consensus_4001#2 GTTGTGTCTTGCGCATC----TGACGCACAATGCACCGCG-GATTAAGTTACAGCATCAA 384 * **** * * * * * * * * * * * * ** * * *** ** consensus_4001#0 GA--GTACGACGATACGCGCCTTCACTTTGCCA-AGCGCTATCTGCAGCTGATGCGCCGC 596 consensus_4001#1 GA--GTACGACGATACGCGCCTTCACTTTGCCA-AGCGCTATCTGCAGCTGATGCGCCGC 585 consensus_4001#2 CGCCGCGCACTAACACCCACAGCACGTCCGCGACAGAACGGCTTGCTGA-GGTGTTCCTT 443 * * * ** * * * ** * ** * *** * * ** ** consensus_4001#0 TACACCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCG-TACCT 655 consensus_4001#1 TACACCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCGGTACCT 645 consensus_4001#2 TTTGGGGTGTA-GTGTATGTGTTGCAAAAAAAAAAAAAAAA------------------- 483 * **** * *** ** ** * ** * consensus_4001#0 GGTGGTGCCGA 666 consensus_4001#1 GGTGGTGC--- 653 consensus_4001#2 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||