cluster # 4006

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4006 cluster # 4006 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4006#0 length = 883 sequences # 2

consensus_4006#1 length = 532 sequences # 1

consensusID : consensus_4006#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 883
fasta sequence

                              [CCGCAAATAGCGTGTGTTAGCTGCGGCAGTATCGCTTGTGCATGATGCACCTGGTGCGCTAGAAGTGTTTGCAAAGTAATTCGTCCCCACATCAGAATAGCGGAGCGCTGCATATTGCCATAGGCCGAGGCACCCTCCGATCTGATCAAACCGCACACGTACGCCACGAAGCAAAAAGCGGAAGGAAAGGAAAAGAAAAAGAATCAAAATGAACCACACGAAAAGCCGGGGGACGAGGGTCCCGCTGAAGGAAGAAACAACGTCCTACCGGGCGTACCTTGCGCTGGGACTGTTTCTTGTGATTTTGTTCCTCTCCTTCCCGACCCTTTGCGGTGCCCATGGACAGCACGCTCACGATCACGATCATCTTCACGATGAGCATGATCATCATCATCATCATCACGAAAGTCCCAGTTTTAAGTATTCGAAGCATGCTAACGAGGTGTACGAAGAGGAACCGGGTCCCGGCAGTTCCACATCATCACCACCACCACCATCATCATGATGGTGGAGATGCGGGCCATGATCATCATCATCATCATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGTAAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATTAGTGGCGGCACCGTGTTTTCATTCTTTTTGCCATCCCGCTGGATAATACGGAAGAGATGCAGCCCCGGCTGAAAACGCTGCTTGCCTTTGCCTCGGGCGGCTACTTGGAGATGCTTTCCTACACTTGATTCCGCACGCCATCCAGCCCCATTCGCACGGGGACGATCATTCGCACGGTCACCACTCGCACGGTCATTCGCATGGTCACTCGCATGGTCATGGAG]

[+] EMBL BM590958             [CCGCAAATAGCGTGTGTTAGCTGCGGCAGTATCGCTTGTGCATGATGCACCTGGTGCGCTAGAAGTGTTTGCAAAGTAATTCGTCCCCACATCAGAATAGCGGAGCGCTGCATATTGCCATAGGCCGAGGCACCCTCCGATCTGATCAAACCGCACACGTACGCCACGAAGCAAAAAGCGGAAGGAAAGGAAAAGAAAAAGAATCAAAATGAACCACACGAAAAGCCGGGGGACGAGGGTCCCGCTGAAGGAAGAAACAACGTCCTACCGGGCGTACCTTGCGCTGGGACTGTTTCTTGTGATTTTGTTCCTCTCCTTCCCGACCCTTTGCGGTGCCCATGGACAGCACGCTCACGATCACGATCATCTTCACGATGAGCATGATCATCATCATCATCATCACGAAAGTCCCAGTTTTAAGTATTCGAAGCATGCTAACGAGGTGTACGAAGAGGAACCGGGTCCCGGCAGTTCCACATCATCACCACCACCACCATCATCATGATGGTGGAGATGCGGGCCATGATCATCATCATCATCATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGTAAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATTAGTGGCGGCAC                                                                                                                                                                                                                     ]
[+] EMBL AL929695             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tATGATGGTGGAGAT NGGG CATGAT ATCATCATCATCATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGTAAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTGTTGATTAGT GCGGCACCGTGTTTTCATTCTTTTTGCCATCCCGCTGGATAATACGGAAGAGATGCAGCCCCGGCTGAAAACGCTGCTTGCCTTTGCCTCGGGCGGCTACTTGGAGATGCTTTCCTACACTTGATTCCGCACGCCATCCAGCCCCATTCGCACGGGGACGATCATTCGCACGGTCACCACTCGCACGGTCATTCGCATGGTCACTCGCATGGTCATGGAG]




>consensus_4006#0
CCGCAAATAGCGTGTGTTAGCTGCGGCAGTATCGCTTGTGCATGATGCACCTGGTGCGCT
AGAAGTGTTTGCAAAGTAATTCGTCCCCACATCAGAATAGCGGAGCGCTGCATATTGCCA
TAGGCCGAGGCACCCTCCGATCTGATCAAACCGCACACGTACGCCACGAAGCAAAAAGCG
GAAGGAAAGGAAAAGAAAAAGAATCAAAATGAACCACACGAAAAGCCGGGGGACGAGGGT
CCCGCTGAAGGAAGAAACAACGTCCTACCGGGCGTACCTTGCGCTGGGACTGTTTCTTGT
GATTTTGTTCCTCTCCTTCCCGACCCTTTGCGGTGCCCATGGACAGCACGCTCACGATCA
CGATCATCTTCACGATGAGCATGATCATCATCATCATCATCACGAAAGTCCCAGTTTTAA
GTATTCGAAGCATGCTAACGAGGTGTACGAAGAGGAACCGGGTCCCGGCAGTTCCACATC
ATCACCACCACCACCATCATCATGATGGTGGAGATGCGGGCCATGATCATCATCATCATC
ATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGTA
AAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATTA
GTGGCGGCACCGTGTTTTCATTCTTTTTGCCATCCCGCTGGATAATACGGAAGAGATGCA
GCCCCGGCTGAAAACGCTGCTTGCCTTTGCCTCGGGCGGCTACTTGGAGATGCTTTCCTA
CACTTGATTCCGCACGCCATCCAGCCCCATTCGCACGGGGACGATCATTCGCACGGTCAC
CACTCGCACGGTCATTCGCATGGTCACTCGCATGGTCATGGAG

consensusID : consensus_4006#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence

                              [CCGCCCACGCGTCCGCATCATCATCATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGTAAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATTAGTGCGGCACCGTTTTTCATTCTGTTTGCCATCCCGCTGGACAATACGGAAGAGATGCAGCCCCGGCTGAAAACGTTGCTTGCCTTTGCCTCGGGCGGCCTACTTGGAGATGCTTTCCTACACTTGATTCCGCACGCTATCCAGCCCCATTCGCACGGGGACGATCATTCGCATGGTCACTCGCACGGTCACTCGCACGGTCACTCGCATGGCCATGGAGAGGCGGACGGTCACGAAAGCCACGGGCACGATATGCGCGTCGGGCTGTGGGTTTTGGCCGGCATCATCGTGTTTTTGGCGGTGGAAAAGTTTGTCCGATTGATTAAGGGAGATGCGGGCCATGGACATGGTCACGGCCACAGCCACGGAGGTGCAAAGCCTGCCGTAC]

[+] EMBL BM633687             [CCGCCCACGCGTCCGCATCATCATCATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGTAAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATTAGTGCGGCACCGTTTTTCATTCTGTTTGCCATCCCGCTGGACAATACGGAAGAGATGCAGCCCCGGCTGAAAACGTTGCTTGCCTTTGCCTCGGGCGGCCTACTTGGAGATGCTTTCCTACACTTGATTCCGCACGCTATCCAGCCCCATTCGCACGGGGACGATCATTCGCATGGTCACTCGCACGGTCACTCGCACGGTCACTCGCATGGCCATGGAGAGGCGGACGGTCACGAAAGCCACGGGCACGATATGCGCGTCGGGCTGTGGGTTTTGGCCGGCATCATCGTGTTTTTGGCGGTGGAAAAGTTTGTCCGATTGATTAAGGGAGATGCGGGCCATGGACATGGTCACGGCCACAGCCACGGAGGTGCAAAGCCTGCCGTAC]




>consensus_4006#1
CCGCCCACGCGTCCGCATCATCATCATGGCGGTCACCATCAACATCATCATCATCATCAC
CACGAAAAGTCAACAAGCGATAGTAAAGCACCGAGAGATACGTTCTACATCTGGGTGCAT
TCGTTGGGTTCAACTTTATTGATTAGTGCGGCACCGTTTTTCATTCTGTTTGCCATCCCG
CTGGACAATACGGAAGAGATGCAGCCCCGGCTGAAAACGTTGCTTGCCTTTGCCTCGGGC
GGCCTACTTGGAGATGCTTTCCTACACTTGATTCCGCACGCTATCCAGCCCCATTCGCAC
GGGGACGATCATTCGCATGGTCACTCGCACGGTCACTCGCACGGTCACTCGCATGGCCAT
GGAGAGGCGGACGGTCACGAAAGCCACGGGCACGATATGCGCGTCGGGCTGTGGGTTTTG
GCCGGCATCATCGTGTTTTTGGCGGTGGAAAAGTTTGTCCGATTGATTAAGGGAGATGCG
GGCCATGGACATGGTCACGGCCACAGCCACGGAGGTGCAAAGCCTGCCGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4006#0      CCGCAAATAGCGTGTGTTAGCTGCGGCAGTATCGCTTGTGCATGATGCACCTGGTGCGCT 60
consensus_4006#1      ------------------------------------------------------------
                                                                                  

consensus_4006#0      AGAAGTGTTTGCAAAGTAATTCGTCCCCACATCAGAATAGCGGAGCGCTGCATATTGCCA 120
consensus_4006#1      ------------------------------------------------------------
                                                                                  

consensus_4006#0      TAGGCCGAGGCACCCTCCGATCTGATCAAACCGCACACGTACGCCACGAAGCAAAAAGCG 180
consensus_4006#1      ------------------------------------------------------------
                                                                                  

consensus_4006#0      GAAGGAAAGGAAAAGAAAAAGAATCAAAATGAACCACACGAAAAGCCGGGGGACGAGGGT 240
consensus_4006#1      ------------------------------------------------------------
                                                                                  

consensus_4006#0      CCCGCTGAAGGAAGAAACAACGTCCTACCGGGCGTACCTTGCGCTGGGACTGTTTCTTGT 300
consensus_4006#1      ------------------------------------------------------------
                                                                                  

consensus_4006#0      GATTTTGTTCCTCTCCTTCCCGACCCTTTGCGGTGCCCATGGACAGCACGCTCACGATCA 360
consensus_4006#1      ------------------------------------------------------------
                                                                                  

consensus_4006#0      CGATCATCTTCACGATGAGCATGATCATCATCATCATCATCACGAAAGTCCCAGTTTTAA 420
consensus_4006#1      ------------------------------------------------------------
                                                                                  

consensus_4006#0      GTATTCGAAGCATGCTAACGAGGTGTACGAAGAGGAACCGGGTCCCGGCAGTTCCACATC 480
consensus_4006#1      ------------------------------------------------------------
                                                                                  

consensus_4006#0      ATCACCACCACCACCATCATCATGATGGTGGAGATGCGGGCCATG-ATCATCATCATCAT 539
consensus_4006#1      ------------------------------------CCGCCCACGCGTCCGCATCATCAT 24
                                                          * * *** *  **  *********

consensus_4006#0      CATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGT 599
consensus_4006#1      CATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGT 84
                      ************************************************************

consensus_4006#0      AAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATT 659
consensus_4006#1      AAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATT 144
                      ************************************************************

consensus_4006#0      AGTGGCGGCACCGTGTTTTCATTCTTTTTGCCATCCCGCTGGATAATACGGAAGAGATGC 719
consensus_4006#1      AGTG-CGGCACCGT-TTTTCATTCTGTTTGCCATCCCGCTGGACAATACGGAAGAGATGC 202
                      **** ********* ********** ***************** ****************

consensus_4006#0      AGCCCCGGCTGAAAACGCTGCTTGCCTTTGCCTCGGGCGGC-TACTTGGAGATGCTTTCC 778
consensus_4006#1      AGCCCCGGCTGAAAACGTTGCTTGCCTTTGCCTCGGGCGGCCTACTTGGAGATGCTTTCC 262
                      ***************** *********************** ******************

consensus_4006#0      TACACTTGATTCCGCACGCCATCCAGCCCCATTCGCACGGGGACGATCATTCGCACGGTC 838
consensus_4006#1      TACACTTGATTCCGCACGCTATCCAGCCCCATTCGCACGGGGACGATCATTCGCATGGTC 322
                      ******************* *********************************** ****

consensus_4006#0      ACCACTCGCACGGTCATTCGCATGGTCACTCGCATGGTCATGGAG--------------- 883
consensus_4006#1      ---ACTCGCACGGTCACTCGCACGGTCACTCGCATGGCCATGGAGAGGCGGACGGTCACG 379
                         ************* ***** ************** *******               

consensus_4006#0      ------------------------------------------------------------
consensus_4006#1      AAAGCCACGGGCACGATATGCGCGTCGGGCTGTGGGTTTTGGCCGGCATCATCGTGTTTT 439
                                                                                  

consensus_4006#0      ------------------------------------------------------------
consensus_4006#1      TGGCGGTGGAAAAGTTTGTCCGATTGATTAAGGGAGATGCGGGCCATGGACATGGTCACG 499
                                                                                  

consensus_4006#0      ---------------------------------
consensus_4006#1      GCCACAGCCACGGAGGTGCAAAGCCTGCCGTAC 532