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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[TTNAACAATAATCATGAAATCCTTGCTGATTCTCTTTGCCTGTATTGTTTGTGCATTAGCTCGACCTGAACCAGAGCCCCCGAGAGCACGCATTGTCGTGCCTGCGAAGCAACAGCAATTGCCGCAGTACGAATATGGCGCACCGAAACCAGAATACGGTCCACCAGCAGAAGAATATGGTCCACCACCGCCCACGGTATATGGTCCACCGGCCCGTGAATATGGCCCGCCACCGAAACTGATCACCAAGAATGTGTACGTGCACGTTCCACCAGAGGAACCGACCGAGATTGTCAAAAGTCCCGTACTGGAAGCTCCCATTCCCAAAAAGCATTACAAAATTATCTTCATTAAGGCGCCGGCTCCACCAGCCCCGATCAAGCAGGTGATTCCACCACAGCCACAGGACGAACATAAGACCCTCGTCTACGTGCTGGTTAAGAAACCGGAGGATCCCGCACCATTGGAAATTCCAGTGCCAGAAACTACCGAGCCCAACAAACCGGAGGTGTACTTCATCAAGTACAAGGAGGGCGAAAAGGAGCCACACAAACAGTACGGCCCACCAGCTCCCGCCTATGGACCGCCGTCTGGGCCGGCCCGGTATCAACAATTCTGAGCACCTCAAAAACTAGACAAT]
[+] EMBL BX628150 [TTNAACAATAATCATGAAATCCTTGCTGATTCTCTTTGCCTGTATTGTTTGTGCATTAGCTCGACCTGAACCAGAGCCCCCGAGAGCACGCATTGTCGTGCCTGCGAAGCAACAGCAATTGCCGCAGTACGAATATGGCGCACCGAAACCAGAATACGGTCCACCAGCAGAAGAATATGGTCCACCACCGCCCACGGTATATGGTCCACCGGCCCGTGAATATGGCCCGCCACCGAAACTGATCACCAAGAATGTGTACGTGCACGTTCCACCAGAGGAACCGACCGAGATTGTCAAAAGTCCCGTACTGGAAGCTCCCATTCCCAAAAAGCATTACAAAATTATCTTCATTAAGGCGCCGGCTCCACCAGCCCCGATCAAGCAGGTGATTCCACCACAGCCACAGGACGAACATAAGACCCTCGTCTACGTGCTGGTTAAGAAACCGGAGGATCCCGCACCATTGGAAATTCCAGTGCCAGAAACTACCGAGCCCAACAAACCGGAGGTGTACTTCATCAAGTACAAGGAGGGCGAAAAGGAGCCACACAAACAGTACGGCCCACCAGCTCCCGCCTATGGACCGCCGTCTGGGCCGGCCCGGTATCAACAATTCTGAGCACCTCAAAAACTAGACAAT]
consensusID : consensus_4008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence
[AGATTCGCCCGAGGGAAGAATATNGTCAACACGCCACGGTATATNGTCACCGGCCGTGAATATNGCCCGCCACGCAACTGATCACCAAGAATGTGTACGTGCACGTTCCACCAGAGGAACCGACCGAGATTGTCAAAAGTCCCGTGCTGGAAGCTCCCATTCCCAAAAAGCATTACAAAATTATCTTCATTAAGGCGCCGGTCCACAGCCCGATCAAGCAGGTGATTCCACAAGCAAGGACGAACATAAGACCTCGTCTACGTGCTGGTTAAGAAACCGGAGGATCCCGCACCATTGGAAATTCCAGTGCCAGAAACTACCGAGCCCAACAAACCGGAGGTGTACTTCATCAAGTACAAGGAGTGGCGAAAAGGAGCCACACAAACAGTACTGGNCCACCAGCTCCCGCCTATGTGACCGCCGTCTGGGCCGGCCCGGTATCAACAATTCTGAGCACCTCAAAAACTAGACAATTCTCAAGTGCTCTGGAAGTCGCAGTCGAAAGAAAAAGATTTTCCAAGTTGTTATTTGCTTAGTANTAGTAATTGTTGTTGTAT]
[+] EMBL AL931192 [AGATTCGCCCGAGGGAAGAATATNGTCAACACGCCACGGTATATNGTCACCGGCCGTGAATATNGCCCGCCACGCAACTGATCACCAAGAATGTGTACGTGCACGTTCCACCAGAGGAACCGACCGAGATTGTCAAAAGTCCCGTGCTGGAAGCTCCCATTCCCAAAAAGCATTACAAAATTATCTTCATTAAGGCGCCGGTCCACAGCCCGATCAAGCAGGTGATTCCACAAGCAAGGACGAACATAAGACCTCGTCTACGTGCTGGTTAAGAAACCGGAGGATCCCGCACCATTGGAAATTCCAGTGCCAGAAACTACCGAGCCCAACAAACCGGAGGTGTACTTCATCAAGTACAAGGAGTGGCGAAAAGGAGCCACACAAACAGTACTGGNCCACCAGCTCCCGCCTATGTGACCGCCGTCTGGGCCGGCCCGGTATCAACAATTCTGAGCACCTCAAAAACTAGACAATTCTCAAGTGCTCTGGAAGTCGCAGTCGAAAGAAAAAGATTTTCCAAGTTGTTATTTGCTTAGTANTAGTAATTGTTGTTGTAT]
consensusID : consensus_4008#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[GAATCGCACGAGGNGATCACAAGAATGTGTACGTGCACGTTCCACCAGAGGAACCGACCGAGATTGTCAAAAGTCCCGTACTGGAAGCTCCCATTCCCAAAAAGCATTACAAAATTATCTTCATTAAGGCGCCGGCTCCACCAGCCCCGATCAAGCAGGTGATTCCACCACAGCACAGGACGAACATAAGACCCTCGTCTACGTGCTGGTTAAGAAACCGGAGGATCCCGCACATTGGAAATTCCAGTGCCAGAAACTACCGAGCCCAACAAACCGGAGGTGTACTTCATCAAGTACAAGGAGGGCGAAAAGGAGCCACACAAACAGTACGGCCACAGCTCCCGCCTATGGACCGCCGTCTGGGCCGGCCCGGTATCAACAATTCTGAGCACCTCAAAAACTAGACAATTCTCAAGTGCTCTGGAAGTCGCAGTCGAAAGAAAAAGATTTTCCAAGTTGTTCATTGCTTAGTAGTAGTAATTGTGTCGTATGTTAAGTTTTTAAAAGTTTGCATACGGTGCTGTTGTTT]
[+] EMBL AL929739 [GAATCGCACGAGGNGATCACAAGAATGTGTACGTGCACGTTCCACCAGAGGAACCGACCGAGATTGTCAAAAGTCCCGTACTGGAAGCTCCCATTCCCAAAAAGCATTACAAAATTATCTTCATTAAGGCGCCGGCTCCACCAGCCCCGATCAAGCAGGTGATTCCACCACAGCACAGGACGAACATAAGACCCTCGTCTACGTGCTGGTTAAGAAACCGGAGGATCCCGCACATTGGAAATTCCAGTGCCAGAAACTACCGAGCCCAACAAACCGGAGGTGTACTTCATCAAGTACAAGGAGGGCGAAAAGGAGCCACACAAACAGTACGGCCACAGCTCCCGCCTATGGACCGCCGTCTGGGCCGGCCCGGTATCAACAATTCTGAGCACCTCAAAAACTAGACAATTCTCAAGTGCTCTGGAAGTCGCAGTCGAAAGAAAAAGATTTTCCAAGTTGTTCATTGCTTAGTAGTAGTAATTGTGTCGTATGTTAAGTTTTTAAAAGTTTGCATACGGTGCTGTTGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4008#1 ------------------------------------------------------------
consensus_4008#2 ------------------------------------------------------------
consensus_4008#0 TTNAACAATAATCATGAAATCCTTGCTGATTCTCTTTGCCTGTATTGTTTGTGCATTAGC 60
consensus_4008#1 ------------------------------------------------------------
consensus_4008#2 ------------------------------------------------------------
consensus_4008#0 TCGACCTGAACCAGAGCCCCCGAGAGCACGCATTGTCGTGCCTGCGAAGCAACAGCAATT 120
consensus_4008#1 --------------------------------------AGATTCGCCCGAGGGAAGAATA 22
consensus_4008#2 ------------------------------------------------------------
consensus_4008#0 GCCGCAGTACGAATATGGCGCACCGAAACCAGAATACGGTCCACCAGCAGAAGAATATGG 180
consensus_4008#1 TNGTCAACACGCCACGGTATATNGTCACCGG--CCGTGAATATNGCCCGCCAC-GCAACT 79
consensus_4008#2 -------------------------------------------GAATCGC-AC-G-AGGN 14
consensus_4008#0 TCCACCACCGCCCACGGTATATGGTCCACCGGCCCGTGAATATGGCCCGCCACCGAAACT 240
*** ** * *
consensus_4008#1 GATCACCAAGAATGTGTACGTGCACGTTCCACCAGAGGAACCGACCGAGATTGTCAAAAG 139
consensus_4008#2 GATCAC-AAGAATGTGTACGTGCACGTTCCACCAGAGGAACCGACCGAGATTGTCAAAAG 73
consensus_4008#0 GATCACCAAGAATGTGTACGTGCACGTTCCACCAGAGGAACCGACCGAGATTGTCAAAAG 300
****** *****************************************************
consensus_4008#1 TCCCGTGCTGGAAGCTCCCATTCCCAAAAAGCATTACAAAATTATCTTCATTAAGGCGCC 199
consensus_4008#2 TCCCGTACTGGAAGCTCCCATTCCCAAAAAGCATTACAAAATTATCTTCATTAAGGCGCC 133
consensus_4008#0 TCCCGTACTGGAAGCTCCCATTCCCAAAAAGCATTACAAAATTATCTTCATTAAGGCGCC 360
****** *****************************************************
consensus_4008#1 GG-TCCAC--AGCCCGATCAAGCAGGTGATTCCACA--AGC-A-AGGACGAACATAAGAC 252
consensus_4008#2 GGCTCCACCAGCCCCGATCAAGCAGGTGATTCCACCACAGC-ACAGGACGAACATAAGAC 192
consensus_4008#0 GGCTCCACCAGCCCCGATCAAGCAGGTGATTCCACCACAGCCACAGGACGAACATAAGAC 420
** ***** *********************** *** * ****************
consensus_4008#1 C-TCGTCTACGTGCTGGTTAAGAAACCGGAGGATCCCGCACCATTGGAAATTCCAGTGCC 311
consensus_4008#2 CCTCGTCTACGTGCTGGTTAAGAAACCGGAGGATCCCGCAC-ATTGGAAATTCCAGTGCC 251
consensus_4008#0 CCTCGTCTACGTGCTGGTTAAGAAACCGGAGGATCCCGCACCATTGGAAATTCCAGTGCC 480
* *************************************** ******************
consensus_4008#1 AGAAACTACCGAGCCCAACAAACCGGAGGTGTACTTCATCAAGTACAAGGAGTGGCGAAA 371
consensus_4008#2 AGAAACTACCGAGCCCAACAAACCGGAGGTGTACTTCATCAAGTACAAGGAG-GGCGAAA 310
consensus_4008#0 AGAAACTACCGAGCCCAACAAACCGGAGGTGTACTTCATCAAGTACAAGGAG-GGCGAAA 539
**************************************************** *******
consensus_4008#1 AGGAGCCACACAAACAGTACTGGNCCACCAGCTCCCGCCTATGTGACCGCCGTCTGGGCC 431
consensus_4008#2 AGGAGCCACACAAACAGTAC--GGCCAC-AGCTCCCGCCTATG-GACCGCCGTCTGGGCC 366
consensus_4008#0 AGGAGCCACACAAACAGTAC-GGCCCACCAGCTCCCGCCTATG-GACCGCCGTCTGGGCC 597
******************** * **** ************** ****************
consensus_4008#1 GGCCCGGTATCAACAATTCTGAGCACCTCAAAAACTAGACAATTCTCAAGTGCTCTGGAA 491
consensus_4008#2 GGCCCGGTATCAACAATTCTGAGCACCTCAAAAACTAGACAATTCTCAAGTGCTCTGGAA 426
consensus_4008#0 GGCCCGGTATCAACAATTCTGAGCACCTCAAAAACTAGACAAT----------------- 640
*******************************************
consensus_4008#1 GTCGCAGTCGAAAGAAAAAGATTTTCCAAGTTGTTATTTGCTTAGTANTAGTAATTGTTG 551
consensus_4008#2 GTCGCAGTCGAAAGAAAAAGATTTTCCAAGTTGTTCATTGCTTAGTAGTAGTAATTGT-G 485
consensus_4008#0 ------------------------------------------------------------
consensus_4008#1 TTGTAT-------------------------------------- 557
consensus_4008#2 TCGTATGTTAAGTTTTTAAAAGTTTGCATACGGTGCTGTTGTTT 529
consensus_4008#0 --------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||