cluster # 4014

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Anopheles gambiae
cluster # 4014 cluster # 4014 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4014#0 length = 661 sequences # 2

consensus_4014#1 length = 661 sequences # 1

consensusID : consensus_4014#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 661
fasta sequence

                              [ATGGCGACAAGAAAGAGGAAGAGAAAACAGCAGAAACAGAAGAAGCAACGGAGGAGTCAAGTGTTGCTGCAGAAAAAGAGGAACCTACTACTACTACTACTACTACCATCACCGCAACGGAAAACAGCCAGCCCAAGGATGCAGACGACACGACCACCACCGCACCCGTCGAAGAGAGCGCATCAACGGCACCAAAGGAAAGCGATGCCCGGACCGACCAAACACCTAAAGCACAGCCAAAGCCACAGCCATCGCCGTTAACGGCCAGGCAAAGAAAACTCCGGCTTGCCACGGATAGGAAAGAATCGGCAGCGAAGGGTACGAACGAAACAGCGACCACAACCGCAACGGACGAAGTGAGCGGCACGTCGGACGAGGAAAAGGCTAAAAAGGCGAAGGCCGGAAAGGCGGAACCATCGAGCGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGCGGCTGGTGGGAGTGGCTCGGAGCAAAAATCTCGTCGCCAGAAGTGAGGAAAGCAATTGCGTTTAAGTATAGTTGCTGCATGAGCGTGTTTTTTTTAGTTACTGGATTTTTCACAACCTACATTACACTTTACGATGAAGATATGATAGTTTTATAGAGATAGAACCAATAAATAGCCATCTTCCATGGAACGGCCTAATGCAAGTTT]

[+] EMBL BX609670             [ATGGCGACAAGAAAGAGGAAGAGAAAACAGCAGAAACAGAAGAAGCAACGGAGGAGTCAAGTGTTGCTGCAGAAAAAGAGGAACCTACTACTACTACTACTACTACCATCACCGCAACGGAAAACAGCCAGCCCAAGGATGCAGACGACACGACCACCACCGCACCCGTCGAAGAGAGCGCATCAACGGCACCAAAGGAAAGCGATGCCCGGACCGACCAAACACCTAAAGCACAGCCAAAGCCACAGCCATCGCCGTTAACGGCCAGGCAAAGAAAACTCCGGCTTGCCACGGATAGGAAAGAATCGGCAGCGAAGGGTACGAACGAAACAGCGACCACAACCGCAACGGACGAAGTGAGCGGCACGTCGGACGAGGAAAAGGCTAAAAAGGCGAAGGCCGGAAAGGCGGAACCATCGAGCGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGCGGCTGGTGGGAGTGGCTCGGAGCAAAAATCTCGTCGCCAGAAGTGAGGAAAGCAATTGCGTTTAAGTATAGTTGCTGCATGAGCGTGTTTTTTTTAGTTACTGGATTTTTCACAACCTACATTACACTTTACGATGAAGATATGATAGTTTTATAGAGATAGAACCAATAAATAGCCATCTTCCATGGAACGGCCTA          ]
[+] EMBL BM638192             [                                                             ccgTGCTGCAGGAAAAGAGGAACCTACTACTACTACTACTACTACCATCACCGCAACGGAAAACAGCCAGCCCAAGGATGCAGACGACACGACCACCACCGCACCCGTCGAAGAGAGCGCATCAACGGCACCAAAGGAAAGCGATGCCCGGACCGACCAAACACCTAAAGCACAGCCAAAGCCACAGCCATCGCCGTTAACGGCCAGGCAAAGAAAACTCCGGCTTGCCACGGATAGGAAAGAATCGGCAGCGAAGGGTACGAACGAAACAGCGACCACAACCGCAACGGACGAAGTGAGCGGCACGTCGGACGAGGAAAAGGCTAAAAAGGCGAAGGCCGGAAAGGCGGAACCATCGAGCGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGCGGCTGGTGGGAGTGGCTCGGAGCAAAAATCTCGTCGCCAGAAGTGAGGAAAGCAATTGCGTTTAAGTATAGTTGCTGCATGAGCGTGTTTTTTTTAGTTACTGGAGTTTTCACAACCTACATTACACTTTACGATGAAGATATGATAGTTTTATAGAGATAGAACCAATAAATAGCCATCTTCCATGGAACGGCCTAATGCAAGTTT]




>consensus_4014#0
ATGGCGACAAGAAAGAGGAAGAGAAAACAGCAGAAACAGAAGAAGCAACGGAGGAGTCAA
GTGTTGCTGCAGAAAAAGAGGAACCTACTACTACTACTACTACTACCATCACCGCAACGG
AAAACAGCCAGCCCAAGGATGCAGACGACACGACCACCACCGCACCCGTCGAAGAGAGCG
CATCAACGGCACCAAAGGAAAGCGATGCCCGGACCGACCAAACACCTAAAGCACAGCCAA
AGCCACAGCCATCGCCGTTAACGGCCAGGCAAAGAAAACTCCGGCTTGCCACGGATAGGA
AAGAATCGGCAGCGAAGGGTACGAACGAAACAGCGACCACAACCGCAACGGACGAAGTGA
GCGGCACGTCGGACGAGGAAAAGGCTAAAAAGGCGAAGGCCGGAAAGGCGGAACCATCGA
GCGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGCGGCTGGTGGGAGTGGCTCGGAGCAAA
AATCTCGTCGCCAGAAGTGAGGAAAGCAATTGCGTTTAAGTATAGTTGCTGCATGAGCGT
GTTTTTTTTAGTTACTGGATTTTTCACAACCTACATTACACTTTACGATGAAGATATGAT
AGTTTTATAGAGATAGAACCAATAAATAGCCATCTTCCATGGAACGGCCTAATGCAAGTT
T

consensusID : consensus_4014#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [GCAAGAATCCCCCGAGGTTATAAACCACTGACGAAAGGCAGGCCGAACTTCCACCGTTCCCGATCAACCGAAGGAAGGTGCCGATGGCGACAAGAAAGAGGAAGAGAAAACAGCAGAAACAGAAGAAGCAACGGAGNGAGTCAAGTGTTGCTGCAGAAAAAGAGGAACCTACTACTACTACTACTACTACCATCACCGCAACGGAAAACAGCAGCCCAAGGGATGCAGACTGACACTGACAACAACGGTACCCTGTCGAAAGAGAGCGCATCAACGGCACAAATGGAAAGCGATTGCCGGACCTGACAAACACTAAAAGCACATGCAAAGCCACCAGCCATCGCCGTTAAACGGCCAGTGGCAAAGAAAACTCCGGCTTTGCCACTGGCATACGGAAAGAATCTGGCAGCGAAGGGTAACGAACGAACACATGCTGACCACAACCGCAACGGACGAACGTGAGCGGCACGTCGGACGAGGAACAAGGCTAAAAAGNGCGAACNGCCGGAAAGGCGGAAACCATCGAGCGGTAGTAGTAGTAGTAAGCTAAGTAGTAGTAGTGACGGCCTGGTGGGAGGTGGCCTCGCGCAGCAAAANAATCTCGTCGACCAGAAGCTGACGCGAANACGCCACATATGCGGTCATAANNGCTATTAGTTAG]

[+] EMBL AL929823             [GCAAGAATCCCCCGAGGTTATAAACCACTGACGAAAGGCAGGCCGAACTTCCACCGTTCCCGATCAACCGAAGGAAGGTGCCGATGGCGACAAGAAAGAGGAAGAGAAAACAGCAGAAACAGAAGAAGCAACGGAGNGAGTCAAGTGTTGCTGCAGAAAAAGAGGAACCTACTACTACTACTACTACTACCATCACCGCAACGGAAAACAGCAGCCCAAGGGATGCAGACTGACACTGACAACAACGGTACCCTGTCGAAAGAGAGCGCATCAACGGCACAAATGGAAAGCGATTGCCGGACCTGACAAACACTAAAAGCACATGCAAAGCCACCAGCCATCGCCGTTAAACGGCCAGTGGCAAAGAAAACTCCGGCTTTGCCACTGGCATACGGAAAGAATCTGGCAGCGAAGGGTAACGAACGAACACATGCTGACCACAACCGCAACGGACGAACGTGAGCGGCACGTCGGACGAGGAACAAGGCTAAAAAGNGCGAACNGCCGGAAAGGCGGAAACCATCGAGCGGTAGTAGTAGTAGTAAGCTAAGTAGTAGTAGTGACGGCCTGGTGGGAGGTGGCCTCGCGCAGCAAAANAATCTCGTCGACCAGAAGCTGACGCGAANACGCCACATATGCGGTCATAANNGCTATTAGTTAG]




>consensus_4014#1
GCAAGAATCCCCCGAGGTTATAAACCACTGACGAAAGGCAGGCCGAACTTCCACCGTTCC
CGATCAACCGAAGGAAGGTGCCGATGGCGACAAGAAAGAGGAAGAGAAAACAGCAGAAAC
AGAAGAAGCAACGGAGNGAGTCAAGTGTTGCTGCAGAAAAAGAGGAACCTACTACTACTA
CTACTACTACCATCACCGCAACGGAAAACAGCAGCCCAAGGGATGCAGACTGACACTGAC
AACAACGGTACCCTGTCGAAAGAGAGCGCATCAACGGCACAAATGGAAAGCGATTGCCGG
ACCTGACAAACACTAAAAGCACATGCAAAGCCACCAGCCATCGCCGTTAAACGGCCAGTG
GCAAAGAAAACTCCGGCTTTGCCACTGGCATACGGAAAGAATCTGGCAGCGAAGGGTAAC
GAACGAACACATGCTGACCACAACCGCAACGGACGAACGTGAGCGGCACGTCGGACGAGG
AACAAGGCTAAAAAGNGCGAACNGCCGGAAAGGCGGAAACCATCGAGCGGTAGTAGTAGT
AGTAAGCTAAGTAGTAGTAGTGACGGCCTGGTGGGAGGTGGCCTCGCGCAGCAAAANAAT
CTCGTCGACCAGAAGCTGACGCGAANACGCCACATATGCGGTCATAANNGCTATTAGTTA
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4014#0      ------------------------------------------------------------
consensus_4014#1      GCAAGAATCCCCCGAGGTTATAAACCACTGACGAAAGGCAGGCCGAACTTCCACCGTTCC 60
                                                                                  

consensus_4014#0      -----------------------ATGGCGACAAGAAAGAGGAAGAGAAAACAGCAGAAAC 37
consensus_4014#1      CGATCAACCGAAGGAAGGTGCCGATGGCGACAAGAAAGAGGAAGAGAAAACAGCAGAAAC 120
                                             *************************************

consensus_4014#0      AGAAGAAGCAACGGAGG-AGTCAAGTGTTGCTGCAGAAAAAGAGGAACCTACTACTACTA 96
consensus_4014#1      AGAAGAAGCAACGGAGNGAGTCAAGTGTTGCTGCAGAAAAAGAGGAACCTACTACTACTA 180
                      ****************  ******************************************

consensus_4014#0      CTACTACTACCATCACCGCAACGGAAAACAGCCAGCCCAAGGATGCAGAC-GACAC-GAC 154
consensus_4014#1      CTACTACTACCATCACCGCAACGGAAAACAGCAGCCCAAGGGATGCAGACTGACACTGAC 240
                      ********************************   ** * ********** ***** ***

consensus_4014#0      CACCACCGCACCC-GTCGAA-GAGAGCGCATCAACGGCACCAAAGGAAAGCGATGCCCGG 212
consensus_4014#1      AACAACGGTACCCTGTCGAAAGAGAGCGCATCAACGGCACAAATGGAAAGCGATTGCCGG 300
                       ** ** * **** ****** ******************* ** **********  ****

consensus_4014#0      ACCGACCAAACACCTAAAGCACAGCCAAAGCCAC-AGCCATCGCCGTTAA-CGGCCAG-- 268
consensus_4014#1      ACCTGACAAACACTAAAAGCACATGCAAAGCCACCAGCCATCGCCGTTAAACGGCCAGTG 360
                      ***   *******  ********  ********* *************** *******  

consensus_4014#0      GCAAAGAAAACTCCGGCTT-GCCACGGATA---GGAAAGAATC-GGCAGCGAAGGGTA-C 322
consensus_4014#1      GCAAAGAAAACTCCGGCTTTGCCACTGGCATACGGAAAGAATCTGGCAGCGAAGGGTAAC 420
                      ******************* ***** *  *   ********** ************** *

consensus_4014#0      GAACGAA---ACAGCGACCACAACCGCAACGGACGAA-GTGAGCGGCACGTCGGACGAGG 378
consensus_4014#1      GAACGAACACATGCTGACCACAACCGCAACGGACGAACGTGAGCGGCACGTCGGACGAGG 480
                      *******   *    ********************** **********************

consensus_4014#0      AA-AAGGCTAAAAAGG-CGAA-GGCCGGAAAGGCGGAA-CCATCGAGCGGTAGTAGTAGT 434
consensus_4014#1      AACAAGGCTAAAAAGNGCGAACNGCCGGAAAGGCGGAAACCATCGAGCGGTAGTAGTAGT 540
                      ** ************  ****  *************** *********************

consensus_4014#0      AGTAGT---AGTAGTAGTAGTG-CGGC-TGGTGGGAG-TGGCTCGGAGCA-----AAAAT 483
consensus_4014#1      AGTAAGCTAAGTAGTAGTAGTGACGGCCTGGTGGGAGGTGGCCTCGCGCAGCAAAANAAT 600
                      ****     ************* **** ********* ****   * ***     * ***

consensus_4014#0      CTCGTCG-CCAGAAGTGAGGAAAGCAATTGCGTTTAAGTATAGTTGCTGCATGAGCGTGT 542
consensus_4014#1      CTCGTCGACCAGAAGCTG---ACGCGAANACGCC---ACATATGCGGT-CATAANNGC-T 652
                      ******* *******      * ** *   **       ***   * * *** *  *  *

consensus_4014#0      TTTTTTTAGTTACTGGATTTTTCACAACCTACATTACACTTTACGATGAAGATATGATAG 602
consensus_4014#1      ATTAGTTAG--------------------------------------------------- 661
                       **  ****                                                   

consensus_4014#0      TTTTATAGAGATAGAACCAATAAATAGCCATCTTCCATGGAACGGCCTAATGCAAGTTT 661
consensus_4014#1      -----------------------------------------------------------